data_6O5A # _model_server_result.job_id fQmojDqfP359uhjR2orHTg _model_server_result.datetime_utc '2024-11-05 19:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6O5A # _exptl.entry_id 6O5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O5A _cell.length_a 63.833 _cell.length_b 63.833 _cell.length_c 83.039 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 250 n n C1 C2 GOL sing 251 n n C1 H11 GOL sing 252 n n C1 H12 GOL sing 253 n n O1 HO1 GOL sing 254 n n C2 O2 GOL sing 255 n n C2 C3 GOL sing 256 n n C2 H2 GOL sing 257 n n O2 HO2 GOL sing 258 n n C3 O3 GOL sing 259 n n C3 H31 GOL sing 260 n n C3 H32 GOL sing 261 n n O3 HO3 GOL sing 262 n n # _atom_sites.entry_id 6O5A _atom_sites.fract_transf_matrix[1][1] 0.015666 _atom_sites.fract_transf_matrix[1][2] 0.009045 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC A 1 201 201 2NC 2NC . D 3 GOL B 1 101 522 GOL GOL . E 4 HOH A 1 301 1115 HOH HOH . E 4 HOH A 2 302 1155 HOH HOH . E 4 HOH A 3 303 1026 HOH HOH . E 4 HOH A 4 304 1129 HOH HOH . E 4 HOH A 5 305 1147 HOH HOH . E 4 HOH A 6 306 1152 HOH HOH . E 4 HOH A 7 307 1150 HOH HOH . E 4 HOH A 8 308 1019 HOH HOH . E 4 HOH A 9 309 1133 HOH HOH . E 4 HOH A 10 310 1067 HOH HOH . E 4 HOH A 11 311 1139 HOH HOH . E 4 HOH A 12 312 1001 HOH HOH . E 4 HOH A 13 313 1020 HOH HOH . E 4 HOH A 14 314 1083 HOH HOH . E 4 HOH A 15 315 1137 HOH HOH . E 4 HOH A 16 316 1010 HOH HOH . E 4 HOH A 17 317 1104 HOH HOH . E 4 HOH A 18 318 1136 HOH HOH . E 4 HOH A 19 319 1094 HOH HOH . E 4 HOH A 20 320 1121 HOH HOH . E 4 HOH A 21 321 1156 HOH HOH . E 4 HOH A 22 322 1008 HOH HOH . E 4 HOH A 23 323 1143 HOH HOH . E 4 HOH A 24 324 1132 HOH HOH . E 4 HOH A 25 325 1077 HOH HOH . E 4 HOH A 26 326 1124 HOH HOH . E 4 HOH A 27 327 1161 HOH HOH . E 4 HOH A 28 328 1110 HOH HOH . E 4 HOH A 29 329 1066 HOH HOH . E 4 HOH A 30 330 1018 HOH HOH . E 4 HOH A 31 331 1101 HOH HOH . E 4 HOH A 32 332 1016 HOH HOH . E 4 HOH A 33 333 1091 HOH HOH . E 4 HOH A 34 334 1131 HOH HOH . E 4 HOH A 35 335 1108 HOH HOH . E 4 HOH A 36 336 1090 HOH HOH . E 4 HOH A 37 337 1149 HOH HOH . E 4 HOH A 38 338 1064 HOH HOH . E 4 HOH A 39 339 1071 HOH HOH . E 4 HOH A 40 340 1123 HOH HOH . E 4 HOH A 41 341 1027 HOH HOH . E 4 HOH A 42 342 1072 HOH HOH . E 4 HOH A 43 343 1135 HOH HOH . E 4 HOH A 44 344 1013 HOH HOH . E 4 HOH A 45 345 1015 HOH HOH . E 4 HOH A 46 346 1044 HOH HOH . E 4 HOH A 47 347 1134 HOH HOH . E 4 HOH A 48 348 1006 HOH HOH . E 4 HOH A 49 349 1039 HOH HOH . E 4 HOH A 50 350 1014 HOH HOH . E 4 HOH A 51 351 1106 HOH HOH . E 4 HOH A 52 352 1076 HOH HOH . E 4 HOH A 53 353 1093 HOH HOH . E 4 HOH A 54 354 1084 HOH HOH . E 4 HOH A 55 355 1073 HOH HOH . E 4 HOH A 56 356 1160 HOH HOH . E 4 HOH A 57 357 1112 HOH HOH . E 4 HOH A 58 358 1157 HOH HOH . E 4 HOH A 59 359 1113 HOH HOH . E 4 HOH A 60 360 1138 HOH HOH . E 4 HOH A 61 361 1068 HOH HOH . E 4 HOH A 62 362 1111 HOH HOH . E 4 HOH A 63 363 1148 HOH HOH . E 4 HOH A 64 364 1116 HOH HOH . F 4 HOH B 1 201 1054 HOH HOH . F 4 HOH B 2 202 1114 HOH HOH . F 4 HOH B 3 203 1158 HOH HOH . F 4 HOH B 4 204 1069 HOH HOH . F 4 HOH B 5 205 1140 HOH HOH . F 4 HOH B 6 206 1028 HOH HOH . F 4 HOH B 7 207 1042 HOH HOH . F 4 HOH B 8 208 1081 HOH HOH . F 4 HOH B 9 209 1009 HOH HOH . F 4 HOH B 10 210 1040 HOH HOH . F 4 HOH B 11 211 1070 HOH HOH . F 4 HOH B 12 212 1154 HOH HOH . F 4 HOH B 13 213 1128 HOH HOH . F 4 HOH B 14 214 1102 HOH HOH . F 4 HOH B 15 215 1079 HOH HOH . F 4 HOH B 16 216 1025 HOH HOH . F 4 HOH B 17 217 1007 HOH HOH . F 4 HOH B 18 218 1022 HOH HOH . F 4 HOH B 19 219 1151 HOH HOH . F 4 HOH B 20 220 1063 HOH HOH . F 4 HOH B 21 221 1062 HOH HOH . F 4 HOH B 22 222 1130 HOH HOH . F 4 HOH B 23 223 1024 HOH HOH . F 4 HOH B 24 224 1107 HOH HOH . F 4 HOH B 25 225 1088 HOH HOH . F 4 HOH B 26 226 1142 HOH HOH . F 4 HOH B 27 227 1085 HOH HOH . F 4 HOH B 28 228 1003 HOH HOH . F 4 HOH B 29 229 1159 HOH HOH . F 4 HOH B 30 230 1043 HOH HOH . F 4 HOH B 31 231 1141 HOH HOH . F 4 HOH B 32 232 1005 HOH HOH . F 4 HOH B 33 233 1125 HOH HOH . F 4 HOH B 34 234 1122 HOH HOH . F 4 HOH B 35 235 1065 HOH HOH . F 4 HOH B 36 236 1092 HOH HOH . F 4 HOH B 37 237 1011 HOH HOH . F 4 HOH B 38 238 1144 HOH HOH . F 4 HOH B 39 239 1078 HOH HOH . F 4 HOH B 40 240 1086 HOH HOH . F 4 HOH B 41 241 1089 HOH HOH . F 4 HOH B 42 242 1021 HOH HOH . F 4 HOH B 43 243 1075 HOH HOH . F 4 HOH B 44 244 1002 HOH HOH . F 4 HOH B 45 245 1127 HOH HOH . F 4 HOH B 46 246 1012 HOH HOH . F 4 HOH B 47 247 1146 HOH HOH . F 4 HOH B 48 248 1004 HOH HOH . F 4 HOH B 49 249 1109 HOH HOH . F 4 HOH B 50 250 1080 HOH HOH . F 4 HOH B 51 251 1126 HOH HOH . F 4 HOH B 52 252 1061 HOH HOH . F 4 HOH B 53 253 1023 HOH HOH . F 4 HOH B 54 254 1095 HOH HOH . F 4 HOH B 55 255 1082 HOH HOH . F 4 HOH B 56 256 1074 HOH HOH . F 4 HOH B 57 257 1153 HOH HOH . F 4 HOH B 58 258 1087 HOH HOH . F 4 HOH B 59 259 1096 HOH HOH . F 4 HOH B 60 260 1145 HOH HOH . F 4 HOH B 61 261 1103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . B . D 3 27.115 3.85 15.318 0.5 40.71 ? C1 GOL 101 B 1 HETATM 2 C C1 GOL . C . D 3 27.596 5.812 15.17 0.25 28.31 ? C1 GOL 101 B 1 HETATM 3 O O1 GOL . B . D 3 26.093 3.851 14.3 0.5 35.39 ? O1 GOL 101 B 1 HETATM 4 O O1 GOL . C . D 3 26.981 6.681 14.209 0.25 27.53 ? O1 GOL 101 B 1 HETATM 5 C C2 GOL . B . D 3 28.127 4.946 14.997 0.5 39.96 ? C2 GOL 101 B 1 HETATM 6 C C2 GOL . C . D 3 27.572 4.35 14.72 0.25 28.35 ? C2 GOL 101 B 1 HETATM 7 O O2 GOL . B . D 3 27.322 6.133 14.821 0.5 38.44 ? O2 GOL 101 B 1 HETATM 8 O O2 GOL . C . D 3 28.86 3.763 14.934 0.25 25.47 ? O2 GOL 101 B 1 HETATM 9 C C3 GOL . B . D 3 29.191 5.002 16.091 0.5 39.55 ? C3 GOL 101 B 1 HETATM 10 C C3 GOL . C . D 3 26.475 3.626 15.502 0.25 29.05 ? C3 GOL 101 B 1 HETATM 11 O O3 GOL . B . D 3 29.904 6.246 16.159 0.5 39.41 ? O3 GOL 101 B 1 HETATM 12 O O3 GOL . C . D 3 25.259 3.729 14.764 0.25 28.89 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 12 #