data_6O5D # _model_server_result.job_id VkxAy06by6_Ed0PZpcroDQ _model_server_result.datetime_utc '2024-11-08 15:05:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":203}' # _entry.id 6O5D # _exptl.entry_id 6O5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O5D _cell.length_a 114.803 _cell.length_b 114.803 _cell.length_c 119.238 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,K 1 1 B,F,L 2 1 C,G,H,I,J,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 76 1_555 A SG CYS 171 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 72 B CYS 76 1_555 B SG CYS 171 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 C SG CYS 72 C CYS 76 1_555 C SG CYS 171 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 6O5D _atom_sites.fract_transf_matrix[1][1] 0.008711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 2 SO4 SO4 . E 2 SO4 A 1 202 5 SO4 SO4 . F 2 SO4 B 1 201 4 SO4 SO4 . G 2 SO4 C 1 201 1 SO4 SO4 . H 2 SO4 C 1 202 3 SO4 SO4 . I 3 GOL C 1 203 1 GOL GOL . J 3 GOL C 1 204 1 GOL GOL . K 4 HOH A 1 301 66 HOH HOH . K 4 HOH A 2 302 2 HOH HOH . K 4 HOH A 3 303 51 HOH HOH . K 4 HOH A 4 304 32 HOH HOH . K 4 HOH A 5 305 72 HOH HOH . K 4 HOH A 6 306 52 HOH HOH . K 4 HOH A 7 307 16 HOH HOH . K 4 HOH A 8 308 5 HOH HOH . K 4 HOH A 9 309 55 HOH HOH . K 4 HOH A 10 310 11 HOH HOH . K 4 HOH A 11 311 18 HOH HOH . K 4 HOH A 12 312 14 HOH HOH . K 4 HOH A 13 313 48 HOH HOH . K 4 HOH A 14 314 71 HOH HOH . K 4 HOH A 15 315 56 HOH HOH . K 4 HOH A 16 316 43 HOH HOH . K 4 HOH A 17 317 53 HOH HOH . K 4 HOH A 18 318 6 HOH HOH . K 4 HOH A 19 319 33 HOH HOH . K 4 HOH A 20 320 74 HOH HOH . K 4 HOH A 21 321 57 HOH HOH . K 4 HOH A 22 322 45 HOH HOH . K 4 HOH A 23 323 36 HOH HOH . K 4 HOH A 24 324 54 HOH HOH . L 4 HOH B 1 301 37 HOH HOH . M 4 HOH C 1 301 8 HOH HOH . M 4 HOH C 2 302 73 HOH HOH . M 4 HOH C 3 303 30 HOH HOH . M 4 HOH C 4 304 27 HOH HOH . M 4 HOH C 5 305 9 HOH HOH . M 4 HOH C 6 306 31 HOH HOH . M 4 HOH C 7 307 15 HOH HOH . M 4 HOH C 8 308 25 HOH HOH . M 4 HOH C 9 309 76 HOH HOH . M 4 HOH C 10 310 12 HOH HOH . M 4 HOH C 11 311 49 HOH HOH . M 4 HOH C 12 312 17 HOH HOH . M 4 HOH C 13 313 10 HOH HOH . M 4 HOH C 14 314 29 HOH HOH . M 4 HOH C 15 315 34 HOH HOH . M 4 HOH C 16 316 4 HOH HOH . M 4 HOH C 17 317 70 HOH HOH . M 4 HOH C 18 318 50 HOH HOH . M 4 HOH C 19 319 65 HOH HOH . M 4 HOH C 20 320 21 HOH HOH . M 4 HOH C 21 321 42 HOH HOH . M 4 HOH C 22 322 3 HOH HOH . M 4 HOH C 23 323 13 HOH HOH . M 4 HOH C 24 324 67 HOH HOH . M 4 HOH C 25 325 28 HOH HOH . M 4 HOH C 26 326 39 HOH HOH . M 4 HOH C 27 327 1 HOH HOH . M 4 HOH C 28 328 35 HOH HOH . M 4 HOH C 29 329 62 HOH HOH . M 4 HOH C 30 330 69 HOH HOH . M 4 HOH C 31 331 20 HOH HOH . M 4 HOH C 32 332 46 HOH HOH . M 4 HOH C 33 333 19 HOH HOH . M 4 HOH C 34 334 41 HOH HOH . M 4 HOH C 35 335 44 HOH HOH . M 4 HOH C 36 336 26 HOH HOH . M 4 HOH C 37 337 24 HOH HOH . M 4 HOH C 38 338 7 HOH HOH . M 4 HOH C 39 339 23 HOH HOH . M 4 HOH C 40 340 68 HOH HOH . M 4 HOH C 41 341 64 HOH HOH . M 4 HOH C 42 342 47 HOH HOH . M 4 HOH C 43 343 22 HOH HOH . M 4 HOH C 44 344 61 HOH HOH . M 4 HOH C 45 345 58 HOH HOH . M 4 HOH C 46 346 75 HOH HOH . M 4 HOH C 47 347 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 47.574 38.974 56.337 1 46.03 ? C1 GOL 203 C 1 HETATM 2 O O1 GOL . . . I 3 47.49 39.585 55.047 1 37.25 ? O1 GOL 203 C 1 HETATM 3 C C2 GOL . . . I 3 48.903 39.219 57.031 1 49.02 ? C2 GOL 203 C 1 HETATM 4 O O2 GOL . . . I 3 48.674 39.423 58.425 1 47.05 ? O2 GOL 203 C 1 HETATM 5 C C3 GOL . . . I 3 49.708 40.377 56.475 1 49.31 ? C3 GOL 203 C 1 HETATM 6 O O3 GOL . . . I 3 50.442 41.057 57.491 1 58.47 ? O3 GOL 203 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #