data_6O5D
#
_model_server_result.job_id            sHwTFVmZ6nvQoD6HOkiZNQ 
_model_server_result.datetime_utc      '2024-11-26 05:40:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":204}' 
#
_entry.id    6O5D 
#
_exptl.entry_id    6O5D 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O5D 
_cell.length_a            114.803 
_cell.length_b            114.803 
_cell.length_c            119.238 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1 
B,F,L 2 1 
C,G,H,I,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 72 A CYS 76 1_555 A SG CYS 171 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 72 B CYS 76 1_555 B SG CYS 171 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 C SG CYS 72 C CYS 76 1_555 C SG CYS 171 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6O5D 
_atom_sites.fract_transf_matrix[1][1]    0.008711 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008711 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 201 2 SO4 SO4 . 
E 2 SO4 A 1 202 5 SO4 SO4 . 
F 2 SO4 B 1 201 4 SO4 SO4 . 
G 2 SO4 C 1 201 1 SO4 SO4 . 
H 2 SO4 C 1 202 3 SO4 SO4 . 
I 3 GOL C 1 203 1 GOL GOL . 
J 3 GOL C 1 204 1 GOL GOL . 
K 4 HOH A 1 301 66 HOH HOH . 
K 4 HOH A 2 302 2 HOH HOH . 
K 4 HOH A 3 303 51 HOH HOH . 
K 4 HOH A 4 304 32 HOH HOH . 
K 4 HOH A 5 305 72 HOH HOH . 
K 4 HOH A 6 306 52 HOH HOH . 
K 4 HOH A 7 307 16 HOH HOH . 
K 4 HOH A 8 308 5 HOH HOH . 
K 4 HOH A 9 309 55 HOH HOH . 
K 4 HOH A 10 310 11 HOH HOH . 
K 4 HOH A 11 311 18 HOH HOH . 
K 4 HOH A 12 312 14 HOH HOH . 
K 4 HOH A 13 313 48 HOH HOH . 
K 4 HOH A 14 314 71 HOH HOH . 
K 4 HOH A 15 315 56 HOH HOH . 
K 4 HOH A 16 316 43 HOH HOH . 
K 4 HOH A 17 317 53 HOH HOH . 
K 4 HOH A 18 318 6 HOH HOH . 
K 4 HOH A 19 319 33 HOH HOH . 
K 4 HOH A 20 320 74 HOH HOH . 
K 4 HOH A 21 321 57 HOH HOH . 
K 4 HOH A 22 322 45 HOH HOH . 
K 4 HOH A 23 323 36 HOH HOH . 
K 4 HOH A 24 324 54 HOH HOH . 
L 4 HOH B 1 301 37 HOH HOH . 
M 4 HOH C 1 301 8 HOH HOH . 
M 4 HOH C 2 302 73 HOH HOH . 
M 4 HOH C 3 303 30 HOH HOH . 
M 4 HOH C 4 304 27 HOH HOH . 
M 4 HOH C 5 305 9 HOH HOH . 
M 4 HOH C 6 306 31 HOH HOH . 
M 4 HOH C 7 307 15 HOH HOH . 
M 4 HOH C 8 308 25 HOH HOH . 
M 4 HOH C 9 309 76 HOH HOH . 
M 4 HOH C 10 310 12 HOH HOH . 
M 4 HOH C 11 311 49 HOH HOH . 
M 4 HOH C 12 312 17 HOH HOH . 
M 4 HOH C 13 313 10 HOH HOH . 
M 4 HOH C 14 314 29 HOH HOH . 
M 4 HOH C 15 315 34 HOH HOH . 
M 4 HOH C 16 316 4 HOH HOH . 
M 4 HOH C 17 317 70 HOH HOH . 
M 4 HOH C 18 318 50 HOH HOH . 
M 4 HOH C 19 319 65 HOH HOH . 
M 4 HOH C 20 320 21 HOH HOH . 
M 4 HOH C 21 321 42 HOH HOH . 
M 4 HOH C 22 322 3 HOH HOH . 
M 4 HOH C 23 323 13 HOH HOH . 
M 4 HOH C 24 324 67 HOH HOH . 
M 4 HOH C 25 325 28 HOH HOH . 
M 4 HOH C 26 326 39 HOH HOH . 
M 4 HOH C 27 327 1 HOH HOH . 
M 4 HOH C 28 328 35 HOH HOH . 
M 4 HOH C 29 329 62 HOH HOH . 
M 4 HOH C 30 330 69 HOH HOH . 
M 4 HOH C 31 331 20 HOH HOH . 
M 4 HOH C 32 332 46 HOH HOH . 
M 4 HOH C 33 333 19 HOH HOH . 
M 4 HOH C 34 334 41 HOH HOH . 
M 4 HOH C 35 335 44 HOH HOH . 
M 4 HOH C 36 336 26 HOH HOH . 
M 4 HOH C 37 337 24 HOH HOH . 
M 4 HOH C 38 338 7 HOH HOH . 
M 4 HOH C 39 339 23 HOH HOH . 
M 4 HOH C 40 340 68 HOH HOH . 
M 4 HOH C 41 341 64 HOH HOH . 
M 4 HOH C 42 342 47 HOH HOH . 
M 4 HOH C 43 343 22 HOH HOH . 
M 4 HOH C 44 344 61 HOH HOH . 
M 4 HOH C 45 345 58 HOH HOH . 
M 4 HOH C 46 346 75 HOH HOH . 
M 4 HOH C 47 347 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 28.2 53.563 47.817 1 76.34 ? C1 GOL 204 C 1 
HETATM 2 O O1 GOL . . . J 3 27.881 53.209 49.16 1 77.09 ? O1 GOL 204 C 1 
HETATM 3 C C2 GOL . . . J 3 27.841 55.003 47.525 1 76.84 ? C2 GOL 204 C 1 
HETATM 4 O O2 GOL . . . J 3 28.71 55.859 48.265 1 76.2 ? O2 GOL 204 C 1 
HETATM 5 C C3 GOL . . . J 3 27.891 55.357 46.05 1 77.3 ? C3 GOL 204 C 1 
HETATM 6 O O3 GOL . . . J 3 28.967 54.711 45.374 1 77.34 ? O3 GOL 204 C 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#