data_6O5E
#
_model_server_result.job_id            ic0wLkL4M1V_v60ntdcwWw 
_model_server_result.datetime_utc      '2025-08-31 12:07:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o5e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6O5E 
#
_exptl.entry_id    6O5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.9 
_cell.angle_gamma         90 
_cell.entry_id            6O5E 
_cell.length_a            40.56 
_cell.length_b            97.36 
_cell.length_c            49.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,N 1 1 
B,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 H N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 156 1_555 A SG CYS 202 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 4 B CYS 156 1_555 B SG CYS 202 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc1 A O ASP 10 A ASP 162 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 A O PHE 12 A PHE 164 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc3 A O ASP 55 A ASP 207 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 A O ALA 57 A ALA 209 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc5 A O ASP 103 A ASP 255 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc6 A O ALA 105 A ALA 257 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc7 A O ASP 157 A ASP 347 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc8 A O ALA 159 A ALA 349 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc9 C NA NA . A NA 501 1_555 N O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc10 E NA NA . A NA 503 1_555 N O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc11 B O ASP 10 B ASP 162 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc12 B O PHE 12 B PHE 164 1_555 J NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc13 B O ASP 55 B ASP 207 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc14 B O ALA 57 B ALA 209 1_555 J NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc15 B O ASP 103 B ASP 255 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc16 B O ALA 105 B ALA 257 1_555 J NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc17 B O ASP 157 B ASP 347 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc18 B O ALA 159 B ALA 349 1_555 J NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc19 H NA NA . B NA 501 1_555 O O HOH . B HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc20 J NA NA . B NA 503 1_555 K O2 SO4 . B SO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6O5E 
_atom_sites.fract_transf_matrix[1][1]    0.024655 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004303 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020649 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 501 501 NA NA . 
D 3 CL A 1 502 502 CL CL . 
E 2 NA A 1 503 503 NA NA . 
F 4 SO4 A 1 504 505 SO4 SO4 . 
G 5 IMD A 1 505 507 IMD IMD . 
H 2 NA B 1 501 501 NA NA . 
I 3 CL B 1 502 502 CL CL . 
J 2 NA B 1 503 503 NA NA . 
K 4 SO4 B 1 504 504 SO4 SO4 . 
L 4 SO4 B 1 505 505 SO4 SO4 . 
M 6 NO3 B 1 506 506 NO3 NO3 . 
N 7 HOH A 1 601 683 HOH HOH . 
N 7 HOH A 2 602 692 HOH HOH . 
N 7 HOH A 3 603 650 HOH HOH . 
N 7 HOH A 4 604 668 HOH HOH . 
N 7 HOH A 5 605 640 HOH HOH . 
N 7 HOH A 6 606 631 HOH HOH . 
N 7 HOH A 7 607 668 HOH HOH . 
N 7 HOH A 8 608 614 HOH HOH . 
N 7 HOH A 9 609 672 HOH HOH . 
N 7 HOH A 10 610 611 HOH HOH . 
N 7 HOH A 11 611 677 HOH HOH . 
N 7 HOH A 12 612 659 HOH HOH . 
N 7 HOH A 13 613 663 HOH HOH . 
N 7 HOH A 14 614 627 HOH HOH . 
N 7 HOH A 15 615 609 HOH HOH . 
N 7 HOH A 16 616 647 HOH HOH . 
N 7 HOH A 17 617 657 HOH HOH . 
N 7 HOH A 18 618 615 HOH HOH . 
N 7 HOH A 19 619 652 HOH HOH . 
N 7 HOH A 20 620 619 HOH HOH . 
N 7 HOH A 21 621 665 HOH HOH . 
N 7 HOH A 22 622 625 HOH HOH . 
N 7 HOH A 23 623 679 HOH HOH . 
N 7 HOH A 24 624 641 HOH HOH . 
N 7 HOH A 25 625 689 HOH HOH . 
N 7 HOH A 26 626 626 HOH HOH . 
N 7 HOH A 27 627 630 HOH HOH . 
N 7 HOH A 28 628 642 HOH HOH . 
N 7 HOH A 29 629 607 HOH HOH . 
N 7 HOH A 30 630 613 HOH HOH . 
N 7 HOH A 31 631 618 HOH HOH . 
N 7 HOH A 32 632 628 HOH HOH . 
N 7 HOH A 33 633 664 HOH HOH . 
N 7 HOH A 34 634 637 HOH HOH . 
N 7 HOH A 35 635 645 HOH HOH . 
N 7 HOH A 36 636 678 HOH HOH . 
N 7 HOH A 37 637 620 HOH HOH . 
N 7 HOH A 38 638 635 HOH HOH . 
N 7 HOH A 39 639 644 HOH HOH . 
N 7 HOH A 40 640 671 HOH HOH . 
N 7 HOH A 41 641 608 HOH HOH . 
N 7 HOH A 42 642 648 HOH HOH . 
N 7 HOH A 43 643 662 HOH HOH . 
N 7 HOH A 44 644 603 HOH HOH . 
N 7 HOH A 45 645 699 HOH HOH . 
N 7 HOH A 46 646 680 HOH HOH . 
N 7 HOH A 47 647 601 HOH HOH . 
N 7 HOH A 48 648 682 HOH HOH . 
N 7 HOH A 49 649 653 HOH HOH . 
N 7 HOH A 50 650 681 HOH HOH . 
N 7 HOH A 51 651 602 HOH HOH . 
N 7 HOH A 52 652 662 HOH HOH . 
N 7 HOH A 53 653 685 HOH HOH . 
N 7 HOH A 54 654 622 HOH HOH . 
N 7 HOH A 55 655 686 HOH HOH . 
N 7 HOH A 56 656 654 HOH HOH . 
N 7 HOH A 57 657 638 HOH HOH . 
N 7 HOH A 58 658 669 HOH HOH . 
N 7 HOH A 59 659 649 HOH HOH . 
N 7 HOH A 60 660 605 HOH HOH . 
N 7 HOH A 61 661 606 HOH HOH . 
N 7 HOH A 62 662 610 HOH HOH . 
N 7 HOH A 63 663 621 HOH HOH . 
N 7 HOH A 64 664 633 HOH HOH . 
N 7 HOH A 65 665 674 HOH HOH . 
N 7 HOH A 66 666 655 HOH HOH . 
N 7 HOH A 67 667 690 HOH HOH . 
N 7 HOH A 68 668 697 HOH HOH . 
N 7 HOH A 69 669 639 HOH HOH . 
N 7 HOH A 70 670 612 HOH HOH . 
N 7 HOH A 71 671 687 HOH HOH . 
N 7 HOH A 72 672 617 HOH HOH . 
N 7 HOH A 73 673 673 HOH HOH . 
N 7 HOH A 74 674 684 HOH HOH . 
N 7 HOH A 75 675 702 HOH HOH . 
N 7 HOH A 76 676 651 HOH HOH . 
N 7 HOH A 77 677 616 HOH HOH . 
N 7 HOH A 78 678 694 HOH HOH . 
N 7 HOH A 79 679 634 HOH HOH . 
N 7 HOH A 80 680 636 HOH HOH . 
N 7 HOH A 81 681 611 HOH HOH . 
N 7 HOH A 82 682 632 HOH HOH . 
N 7 HOH A 83 683 604 HOH HOH . 
N 7 HOH A 84 684 688 HOH HOH . 
N 7 HOH A 85 685 667 HOH HOH . 
N 7 HOH A 86 686 661 HOH HOH . 
N 7 HOH A 87 687 620 HOH HOH . 
N 7 HOH A 88 688 675 HOH HOH . 
N 7 HOH A 89 689 623 HOH HOH . 
N 7 HOH A 90 690 676 HOH HOH . 
N 7 HOH A 91 691 656 HOH HOH . 
N 7 HOH A 92 692 701 HOH HOH . 
N 7 HOH A 93 693 643 HOH HOH . 
N 7 HOH A 94 694 626 HOH HOH . 
N 7 HOH A 95 695 624 HOH HOH . 
O 7 HOH B 1 601 649 HOH HOH . 
O 7 HOH B 2 602 677 HOH HOH . 
O 7 HOH B 3 603 654 HOH HOH . 
O 7 HOH B 4 604 606 HOH HOH . 
O 7 HOH B 5 605 670 HOH HOH . 
O 7 HOH B 6 606 618 HOH HOH . 
O 7 HOH B 7 607 610 HOH HOH . 
O 7 HOH B 8 608 632 HOH HOH . 
O 7 HOH B 9 609 650 HOH HOH . 
O 7 HOH B 10 610 678 HOH HOH . 
O 7 HOH B 11 611 633 HOH HOH . 
O 7 HOH B 12 612 631 HOH HOH . 
O 7 HOH B 13 613 603 HOH HOH . 
O 7 HOH B 14 614 651 HOH HOH . 
O 7 HOH B 15 615 628 HOH HOH . 
O 7 HOH B 16 616 635 HOH HOH . 
O 7 HOH B 17 617 646 HOH HOH . 
O 7 HOH B 18 618 637 HOH HOH . 
O 7 HOH B 19 619 643 HOH HOH . 
O 7 HOH B 20 620 647 HOH HOH . 
O 7 HOH B 21 621 646 HOH HOH . 
O 7 HOH B 22 622 616 HOH HOH . 
O 7 HOH B 23 623 674 HOH HOH . 
O 7 HOH B 24 624 629 HOH HOH . 
O 7 HOH B 25 625 623 HOH HOH . 
O 7 HOH B 26 626 630 HOH HOH . 
O 7 HOH B 27 627 666 HOH HOH . 
O 7 HOH B 28 628 619 HOH HOH . 
O 7 HOH B 29 629 609 HOH HOH . 
O 7 HOH B 30 630 607 HOH HOH . 
O 7 HOH B 31 631 621 HOH HOH . 
O 7 HOH B 32 632 670 HOH HOH . 
O 7 HOH B 33 633 640 HOH HOH . 
O 7 HOH B 34 634 658 HOH HOH . 
O 7 HOH B 35 635 601 HOH HOH . 
O 7 HOH B 36 636 642 HOH HOH . 
O 7 HOH B 37 637 638 HOH HOH . 
O 7 HOH B 38 638 655 HOH HOH . 
O 7 HOH B 39 639 627 HOH HOH . 
O 7 HOH B 40 640 648 HOH HOH . 
O 7 HOH B 41 641 624 HOH HOH . 
O 7 HOH B 42 642 645 HOH HOH . 
O 7 HOH B 43 643 672 HOH HOH . 
O 7 HOH B 44 644 622 HOH HOH . 
O 7 HOH B 45 645 602 HOH HOH . 
O 7 HOH B 46 646 657 HOH HOH . 
O 7 HOH B 47 647 614 HOH HOH . 
O 7 HOH B 48 648 604 HOH HOH . 
O 7 HOH B 49 649 667 HOH HOH . 
O 7 HOH B 50 650 652 HOH HOH . 
O 7 HOH B 51 651 653 HOH HOH . 
O 7 HOH B 52 652 629 HOH HOH . 
O 7 HOH B 53 653 608 HOH HOH . 
O 7 HOH B 54 654 639 HOH HOH . 
O 7 HOH B 55 655 663 HOH HOH . 
O 7 HOH B 56 656 605 HOH HOH . 
O 7 HOH B 57 657 617 HOH HOH . 
O 7 HOH B 58 658 656 HOH HOH . 
O 7 HOH B 59 659 625 HOH HOH . 
O 7 HOH B 60 660 641 HOH HOH . 
O 7 HOH B 61 661 660 HOH HOH . 
O 7 HOH B 62 662 644 HOH HOH . 
O 7 HOH B 63 663 661 HOH HOH . 
O 7 HOH B 64 664 612 HOH HOH . 
O 7 HOH B 65 665 671 HOH HOH . 
O 7 HOH B 66 666 613 HOH HOH . 
O 7 HOH B 67 667 664 HOH HOH . 
O 7 HOH B 68 668 615 HOH HOH . 
O 7 HOH B 69 669 634 HOH HOH . 
O 7 HOH B 70 670 658 HOH HOH . 
O 7 HOH B 71 671 636 HOH HOH . 
O 7 HOH B 72 672 659 HOH HOH . 
O 7 HOH B 73 673 673 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               14.276 
_atom_site.Cartn_y               54.606 
_atom_site.Cartn_z               43.598 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           504 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#