data_6O5N # _model_server_result.job_id yyEP0s5eC19o51cDMZ8zzw _model_server_result.datetime_utc '2025-01-10 18:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":502}' # _entry.id 6O5N # _exptl.entry_id 6O5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.42 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-(4-methyl-1H-indol-3-yl)-1H-imidazol-5-yl](3,4,5-trimethoxyphenyl)methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O5N _cell.length_a 105.301 _cell.length_b 157.764 _cell.length_c 182.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 N N N ? 10 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc8 A OE2 GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc9 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc10 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc11 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc12 B OD2 ASP 177 B ASP 177 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc13 J O2A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc14 K MG MG . B MG 502 1_555 U O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc15 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc16 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc17 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc18 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc19 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc20 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc21 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc22 C OE1 GLU 71 C GLU 71 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc23 O O3G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc24 O O2B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? # _chem_comp.formula 'C22 H21 N3 O4' _chem_comp.formula_weight 391.42 _chem_comp.id QW9 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-(4-methyl-1H-indol-3-yl)-1H-imidazol-5-yl](3,4,5-trimethoxyphenyl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N38 C34 QW9 sing 397 n y N38 C36 QW9 sing 398 n y C40 C34 QW9 doub 399 n y C40 C42 QW9 sing 400 n y C34 C33 QW9 sing 401 n y C36 C35 QW9 doub 402 n y C42 C44 QW9 doub 403 n y C33 C35 QW9 sing 404 n y C33 C46 QW9 doub 405 n y C35 C26 QW9 sing 406 n n C44 C46 QW9 sing 407 n y C46 C47 QW9 sing 408 n n N31 C26 QW9 doub 409 n y N31 C29 QW9 sing 410 n y C26 N27 QW9 sing 411 n y C29 C28 QW9 doub 412 n y N27 C28 QW9 sing 413 n y C28 C24 QW9 sing 414 n n C03 O02 QW9 sing 415 n n C24 O25 QW9 doub 416 n n C24 C21 QW9 sing 417 n n C22 C21 QW9 doub 418 n y C22 C01 QW9 sing 419 n y O02 C01 QW9 sing 420 n n C21 C19 QW9 sing 421 n y C01 C07 QW9 doub 422 n y C19 C13 QW9 doub 423 n y C07 C13 QW9 sing 424 n y C07 O08 QW9 sing 425 n n C13 O14 QW9 sing 426 n n O08 C09 QW9 sing 427 n n O14 C15 QW9 sing 428 n n C03 H1 QW9 sing 429 n n C03 H2 QW9 sing 430 n n C03 H3 QW9 sing 431 n n C09 H4 QW9 sing 432 n n C09 H5 QW9 sing 433 n n C09 H6 QW9 sing 434 n n C15 H7 QW9 sing 435 n n C15 H8 QW9 sing 436 n n C15 H9 QW9 sing 437 n n C19 H10 QW9 sing 438 n n C22 H11 QW9 sing 439 n n C29 H12 QW9 sing 440 n n C36 H13 QW9 sing 441 n n C40 H14 QW9 sing 442 n n C42 H15 QW9 sing 443 n n C44 H16 QW9 sing 444 n n C47 H17 QW9 sing 445 n n C47 H18 QW9 sing 446 n n C47 H19 QW9 sing 447 n n N27 H20 QW9 sing 448 n n N38 H22 QW9 sing 449 n n # _atom_sites.entry_id 6O5N _atom_sites.fract_transf_matrix[1][1] 0.009497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 1 CA CA . J 8 GDP B 1 501 501 GDP GDP . K 6 MG B 1 502 502 MG MG . L 9 MES B 1 503 1 MES MES . M 9 MES B 1 504 2 MES MES . N 10 QW9 B 1 505 1 QW9 QW9 . O 5 GTP C 1 501 501 GTP GTP . P 6 MG C 1 502 502 MG MG . Q 7 CA C 1 503 2 CA CA . R 8 GDP D 1 501 1 GDP GDP . S 10 QW9 D 1 502 2 QW9 QW9 . T 11 HOH A 1 601 37 HOH HOH . T 11 HOH A 2 602 4 HOH HOH . T 11 HOH A 3 603 3 HOH HOH . T 11 HOH A 4 604 7 HOH HOH . T 11 HOH A 5 605 9 HOH HOH . T 11 HOH A 6 606 27 HOH HOH . T 11 HOH A 7 607 6 HOH HOH . T 11 HOH A 8 608 5 HOH HOH . T 11 HOH A 9 609 12 HOH HOH . T 11 HOH A 10 610 10 HOH HOH . T 11 HOH A 11 611 30 HOH HOH . T 11 HOH A 12 612 42 HOH HOH . T 11 HOH A 13 613 8 HOH HOH . T 11 HOH A 14 614 11 HOH HOH . U 11 HOH B 1 601 13 HOH HOH . U 11 HOH B 2 602 2 HOH HOH . U 11 HOH B 3 603 14 HOH HOH . U 11 HOH B 4 604 17 HOH HOH . U 11 HOH B 5 605 34 HOH HOH . U 11 HOH B 6 606 15 HOH HOH . U 11 HOH B 7 607 16 HOH HOH . V 11 HOH C 1 601 20 HOH HOH . V 11 HOH C 2 602 41 HOH HOH . V 11 HOH C 3 603 24 HOH HOH . V 11 HOH C 4 604 23 HOH HOH . V 11 HOH C 5 605 26 HOH HOH . V 11 HOH C 6 606 19 HOH HOH . V 11 HOH C 7 607 18 HOH HOH . V 11 HOH C 8 608 25 HOH HOH . V 11 HOH C 9 609 38 HOH HOH . V 11 HOH C 10 610 28 HOH HOH . V 11 HOH C 11 611 21 HOH HOH . V 11 HOH C 12 612 31 HOH HOH . V 11 HOH C 13 613 22 HOH HOH . W 11 HOH D 1 601 1 HOH HOH . W 11 HOH D 2 602 33 HOH HOH . W 11 HOH D 3 603 43 HOH HOH . X 11 HOH E 1 201 40 HOH HOH . Y 11 HOH F 1 401 35 HOH HOH . Y 11 HOH F 2 402 36 HOH HOH . Y 11 HOH F 3 403 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 QW9 . . . S 10 12.594 -7.673 23.665 1 56.59 ? C01 QW9 502 D 1 HETATM 2 C C03 QW9 . . . S 10 10.5 -8.064 22.717 1 56.63 ? C03 QW9 502 D 1 HETATM 3 C C07 QW9 . . . S 10 13.161 -7.362 24.89 1 56.77 ? C07 QW9 502 D 1 HETATM 4 C C09 QW9 . . . S 10 11.719 -7.041 26.754 1 59.4 ? C09 QW9 502 D 1 HETATM 5 C C13 QW9 . . . S 10 14.385 -7.914 25.233 1 56.96 ? C13 QW9 502 D 1 HETATM 6 C C15 QW9 . . . S 10 16.277 -8.081 26.616 1 58.18 ? C15 QW9 502 D 1 HETATM 7 C C19 QW9 . . . S 10 15.023 -8.783 24.362 1 56.35 ? C19 QW9 502 D 1 HETATM 8 C C21 QW9 . . . S 10 14.452 -9.099 23.141 1 55.06 ? C21 QW9 502 D 1 HETATM 9 C C22 QW9 . . . S 10 13.235 -8.542 22.796 1 55.09 ? C22 QW9 502 D 1 HETATM 10 C C24 QW9 . . . S 10 15.178 -10.053 22.192 1 49.76 ? C24 QW9 502 D 1 HETATM 11 C C26 QW9 . . . S 10 14.401 -9.328 18.707 1 47.44 ? C26 QW9 502 D 1 HETATM 12 C C28 QW9 . . . S 10 14.937 -10.001 20.686 1 55.07 ? C28 QW9 502 D 1 HETATM 13 C C29 QW9 . . . S 10 15.24 -10.986 19.802 1 51.31 ? C29 QW9 502 D 1 HETATM 14 C C33 QW9 . . . S 10 13.703 -7.131 17.337 1 51.21 ? C33 QW9 502 D 1 HETATM 15 C C34 QW9 . . . S 10 13.237 -6.956 16.063 1 50.87 ? C34 QW9 502 D 1 HETATM 16 C C35 QW9 . . . S 10 13.89 -8.511 17.512 1 53.46 ? C35 QW9 502 D 1 HETATM 17 C C36 QW9 . . . S 10 13.538 -9.131 16.334 1 51.59 ? C36 QW9 502 D 1 HETATM 18 C C40 QW9 . . . S 10 12.934 -5.664 15.559 1 52.32 ? C40 QW9 502 D 1 HETATM 19 C C42 QW9 . . . S 10 13.109 -4.544 16.353 1 53.87 ? C42 QW9 502 D 1 HETATM 20 C C44 QW9 . . . S 10 13.583 -4.701 17.648 1 53.7 ? C44 QW9 502 D 1 HETATM 21 C C46 QW9 . . . S 10 13.879 -5.96 18.15 1 52.79 ? C46 QW9 502 D 1 HETATM 22 C C47 QW9 . . . S 10 14.394 -6.004 19.584 1 54.12 ? C47 QW9 502 D 1 HETATM 23 N N27 QW9 . . . S 10 14.428 -8.997 20.008 1 52.12 ? N27 QW9 502 D 1 HETATM 24 N N31 QW9 . . . S 10 14.903 -10.569 18.602 1 50.89 ? N31 QW9 502 D 1 HETATM 25 N N38 QW9 . . . S 10 13.133 -8.193 15.446 1 50.99 ? N38 QW9 502 D 1 HETATM 26 O O02 QW9 . . . S 10 11.364 -7.127 23.294 1 57.01 ? O02 QW9 502 D 1 HETATM 27 O O08 QW9 . . . S 10 12.52 -6.472 25.763 1 58.42 ? O08 QW9 502 D 1 HETATM 28 O O14 QW9 . . . S 10 14.971 -7.603 26.465 1 58.76 ? O14 QW9 502 D 1 HETATM 29 O O25 QW9 . . . S 10 15.966 -10.823 22.621 1 50.07 ? O25 QW9 502 D 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #