data_6O5N
#
_model_server_result.job_id            kQ9NzZ1VZ5Cc8C0H5vf0ZQ 
_model_server_result.datetime_utc      '2025-01-25 15:09:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o5n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":504}' 
#
_entry.id    6O5N 
#
_exptl.entry_id    6O5N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.237 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O5N 
_cell.length_a            105.301 
_cell.length_b            157.764 
_cell.length_c            182.084 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O5N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 L N N 
? 9 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc8 A OE2 GLU 71 A GLU 71 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc9 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc10 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc11 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc12 B OD2 ASP 177 B ASP 177 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc13 J O2A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc14 K MG MG . B MG 502 1_555 U O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc15 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc16 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc17 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc18 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc19 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc20 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc21 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc22 C OE1 GLU 71 C GLU 71 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc23 O O3G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc24 O O2B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
#
_chem_comp.formula           'C6 H13 N O4 S' 
_chem_comp.formula_weight    195.237 
_chem_comp.id                MES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 MES sing 313 n n 
O1 C6 MES sing 314 n n 
C2 C3 MES sing 315 n n 
C2 H21 MES sing 316 n n 
C2 H22 MES sing 317 n n 
C3 N4 MES sing 318 n n 
C3 H31 MES sing 319 n n 
C3 H32 MES sing 320 n n 
N4 C5 MES sing 321 n n 
N4 C7 MES sing 322 n n 
N4 HN4 MES sing 323 n n 
C5 C6 MES sing 324 n n 
C5 H51 MES sing 325 n n 
C5 H52 MES sing 326 n n 
C6 H61 MES sing 327 n n 
C6 H62 MES sing 328 n n 
C7 C8 MES sing 329 n n 
C7 H71 MES sing 330 n n 
C7 H72 MES sing 331 n n 
C8 S MES sing 332 n n 
C8 H81 MES sing 333 n n 
C8 H82 MES sing 334 n n 
S O1S MES doub 335 n n 
S O2S MES doub 336 n n 
S O3S MES sing 337 n n 
#
_atom_sites.entry_id                     6O5N 
_atom_sites.fract_transf_matrix[1][1]    0.009497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006339 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 1 CA CA . 
J 8 GDP B 1 501 501 GDP GDP . 
K 6 MG B 1 502 502 MG MG . 
L 9 MES B 1 503 1 MES MES . 
M 9 MES B 1 504 2 MES MES . 
N 10 QW9 B 1 505 1 QW9 QW9 . 
O 5 GTP C 1 501 501 GTP GTP . 
P 6 MG C 1 502 502 MG MG . 
Q 7 CA C 1 503 2 CA CA . 
R 8 GDP D 1 501 1 GDP GDP . 
S 10 QW9 D 1 502 2 QW9 QW9 . 
T 11 HOH A 1 601 37 HOH HOH . 
T 11 HOH A 2 602 4 HOH HOH . 
T 11 HOH A 3 603 3 HOH HOH . 
T 11 HOH A 4 604 7 HOH HOH . 
T 11 HOH A 5 605 9 HOH HOH . 
T 11 HOH A 6 606 27 HOH HOH . 
T 11 HOH A 7 607 6 HOH HOH . 
T 11 HOH A 8 608 5 HOH HOH . 
T 11 HOH A 9 609 12 HOH HOH . 
T 11 HOH A 10 610 10 HOH HOH . 
T 11 HOH A 11 611 30 HOH HOH . 
T 11 HOH A 12 612 42 HOH HOH . 
T 11 HOH A 13 613 8 HOH HOH . 
T 11 HOH A 14 614 11 HOH HOH . 
U 11 HOH B 1 601 13 HOH HOH . 
U 11 HOH B 2 602 2 HOH HOH . 
U 11 HOH B 3 603 14 HOH HOH . 
U 11 HOH B 4 604 17 HOH HOH . 
U 11 HOH B 5 605 34 HOH HOH . 
U 11 HOH B 6 606 15 HOH HOH . 
U 11 HOH B 7 607 16 HOH HOH . 
V 11 HOH C 1 601 20 HOH HOH . 
V 11 HOH C 2 602 41 HOH HOH . 
V 11 HOH C 3 603 24 HOH HOH . 
V 11 HOH C 4 604 23 HOH HOH . 
V 11 HOH C 5 605 26 HOH HOH . 
V 11 HOH C 6 606 19 HOH HOH . 
V 11 HOH C 7 607 18 HOH HOH . 
V 11 HOH C 8 608 25 HOH HOH . 
V 11 HOH C 9 609 38 HOH HOH . 
V 11 HOH C 10 610 28 HOH HOH . 
V 11 HOH C 11 611 21 HOH HOH . 
V 11 HOH C 12 612 31 HOH HOH . 
V 11 HOH C 13 613 22 HOH HOH . 
W 11 HOH D 1 601 1 HOH HOH . 
W 11 HOH D 2 602 33 HOH HOH . 
W 11 HOH D 3 603 43 HOH HOH . 
X 11 HOH E 1 201 40 HOH HOH . 
Y 11 HOH F 1 401 35 HOH HOH . 
Y 11 HOH F 2 402 36 HOH HOH . 
Y 11 HOH F 3 403 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MES . . . M 9 4.383 -53.199 -48.744 1 89.12 ? O1 MES 504 B 1 
HETATM 2 C C2 MES . . . M 9 3.769 -54.239 -47.986 1 89.76 ? C2 MES 504 B 1 
HETATM 3 C C3 MES . . . M 9 2.449 -53.774 -47.378 1 90.61 ? C3 MES 504 B 1 
HETATM 4 N N4 MES . . . M 9 2.683 -52.505 -46.701 1 90.88 ? N4 MES 504 B 1 
HETATM 5 C C5 MES . . . M 9 3.342 -51.446 -47.454 1 90.37 ? C5 MES 504 B 1 
HETATM 6 C C6 MES . . . M 9 4.647 -52.041 -47.958 1 89.76 ? C6 MES 504 B 1 
HETATM 7 C C7 MES . . . M 9 1.639 -52.097 -45.77 1 92.56 ? C7 MES 504 B 1 
HETATM 8 C C8 MES . . . M 9 2.147 -50.837 -45.079 1 94.4 ? C8 MES 504 B 1 
HETATM 9 S S MES . . . M 9 0.96 -50.253 -44.075 1 96.9 ? S MES 504 B 1 
HETATM 10 O O1S MES . . . M 9 0.863 -48.784 -44.227 1 97.78 ? O1S MES 504 B 1 
HETATM 11 O O2S MES . . . M 9 -0.336 -50.893 -44.394 1 99.17 ? O2S MES 504 B 1 
HETATM 12 O O3S MES . . . M 9 1.323 -50.558 -42.678 1 96.34 ? O3S MES 504 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           12 
#