data_6O5R
#
_model_server_result.job_id            xs4NfuKqMiC0IcQ8PE2Acg 
_model_server_result.datetime_utc      '2024-11-23 21:40:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o5r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    6O5R 
#
_exptl.entry_id    6O5R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              274.298 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6O5R 
_cell.length_a            125.609 
_cell.length_b            125.609 
_cell.length_c            131.428 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O5R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 188.4135 108.780585 43.809333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C13 H16 N5 O2 1' 
_chem_comp.formula_weight    274.298 
_chem_comp.id                LND 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAB CAP LND doub 194 n n 
CAP NAA LND sing 195 n n 
CAP CAQ LND sing 196 n n 
CAQ CAF LND doub 197 n y 
CAQ CAG LND sing 198 n y 
CAF CAI LND sing 199 n y 
CAG CAJ LND doub 200 n y 
CAI NAT LND doub 201 n y 
CAJ NAT LND sing 202 n y 
NAT CAM LND sing 203 n n 
CAK CAM LND sing 204 n n 
CAK CAL LND sing 205 n n 
CAL NAS LND sing 206 n n 
CAH NAS LND sing 207 n y 
CAH CAE LND doub 208 n y 
NAS CAR LND sing 209 n y 
CAE NAO LND sing 210 n y 
CAR NAO LND doub 211 n y 
CAR CAD LND sing 212 n n 
CAD NAN LND doub 213 e n 
NAN OAC LND sing 214 n n 
CAI H1 LND sing 215 n n 
CAF H2 LND sing 216 n n 
NAA H3 LND sing 217 n n 
NAA H4 LND sing 218 n n 
CAG H5 LND sing 219 n n 
CAJ H6 LND sing 220 n n 
CAM H7 LND sing 221 n n 
CAM H8 LND sing 222 n n 
CAK H9 LND sing 223 n n 
CAK H10 LND sing 224 n n 
CAL H11 LND sing 225 n n 
CAL H12 LND sing 226 n n 
CAH H13 LND sing 227 n n 
CAE H14 LND sing 228 n n 
CAD H15 LND sing 229 n n 
OAC H16 LND sing 230 n n 
#
_atom_sites.entry_id                     6O5R 
_atom_sites.fract_transf_matrix[1][1]    0.007961 
_atom_sites.fract_transf_matrix[1][2]    0.004596 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LND A 1 601 2 LND DRG . 
D 3 CL A 1 602 1 CL CL . 
E 2 LND B 1 601 3 LND DRG . 
F 3 CL B 1 602 1 CL CL . 
G 4 HOH A 1 701 34 HOH HOH . 
G 4 HOH A 2 702 35 HOH HOH . 
G 4 HOH A 3 703 5 HOH HOH . 
G 4 HOH A 4 704 123 HOH HOH . 
G 4 HOH A 5 705 46 HOH HOH . 
G 4 HOH A 6 706 75 HOH HOH . 
G 4 HOH A 7 707 62 HOH HOH . 
G 4 HOH A 8 708 13 HOH HOH . 
G 4 HOH A 9 709 166 HOH HOH . 
G 4 HOH A 10 710 113 HOH HOH . 
G 4 HOH A 11 711 157 HOH HOH . 
G 4 HOH A 12 712 65 HOH HOH . 
G 4 HOH A 13 713 122 HOH HOH . 
G 4 HOH A 14 714 67 HOH HOH . 
G 4 HOH A 15 715 84 HOH HOH . 
G 4 HOH A 16 716 81 HOH HOH . 
G 4 HOH A 17 717 50 HOH HOH . 
G 4 HOH A 18 718 20 HOH HOH . 
G 4 HOH A 19 719 4 HOH HOH . 
G 4 HOH A 20 720 7 HOH HOH . 
G 4 HOH A 21 721 102 HOH HOH . 
G 4 HOH A 22 722 121 HOH HOH . 
G 4 HOH A 23 723 70 HOH HOH . 
G 4 HOH A 24 724 1 HOH HOH . 
G 4 HOH A 25 725 95 HOH HOH . 
G 4 HOH A 26 726 9 HOH HOH . 
G 4 HOH A 27 727 48 HOH HOH . 
G 4 HOH A 28 728 45 HOH HOH . 
G 4 HOH A 29 729 128 HOH HOH . 
G 4 HOH A 30 730 193 HOH HOH . 
G 4 HOH A 31 731 69 HOH HOH . 
G 4 HOH A 32 732 98 HOH HOH . 
G 4 HOH A 33 733 77 HOH HOH . 
G 4 HOH A 34 734 42 HOH HOH . 
G 4 HOH A 35 735 24 HOH HOH . 
G 4 HOH A 36 736 25 HOH HOH . 
G 4 HOH A 37 737 93 HOH HOH . 
G 4 HOH A 38 738 11 HOH HOH . 
G 4 HOH A 39 739 109 HOH HOH . 
G 4 HOH A 40 740 146 HOH HOH . 
G 4 HOH A 41 741 152 HOH HOH . 
G 4 HOH A 42 742 41 HOH HOH . 
G 4 HOH A 43 743 79 HOH HOH . 
G 4 HOH A 44 744 147 HOH HOH . 
G 4 HOH A 45 745 54 HOH HOH . 
G 4 HOH A 46 746 156 HOH HOH . 
G 4 HOH A 47 747 40 HOH HOH . 
G 4 HOH A 48 748 16 HOH HOH . 
G 4 HOH A 49 749 39 HOH HOH . 
G 4 HOH A 50 750 135 HOH HOH . 
G 4 HOH A 51 751 8 HOH HOH . 
G 4 HOH A 52 752 94 HOH HOH . 
G 4 HOH A 53 753 51 HOH HOH . 
G 4 HOH A 54 754 129 HOH HOH . 
G 4 HOH A 55 755 99 HOH HOH . 
G 4 HOH A 56 756 29 HOH HOH . 
G 4 HOH A 57 757 205 HOH HOH . 
G 4 HOH A 58 758 63 HOH HOH . 
G 4 HOH A 59 759 112 HOH HOH . 
G 4 HOH A 60 760 151 HOH HOH . 
G 4 HOH A 61 761 198 HOH HOH . 
G 4 HOH A 62 762 163 HOH HOH . 
G 4 HOH A 63 763 186 HOH HOH . 
G 4 HOH A 64 764 148 HOH HOH . 
G 4 HOH A 65 765 125 HOH HOH . 
G 4 HOH A 66 766 164 HOH HOH . 
G 4 HOH A 67 767 187 HOH HOH . 
G 4 HOH A 68 768 179 HOH HOH . 
G 4 HOH A 69 769 90 HOH HOH . 
G 4 HOH A 70 770 192 HOH HOH . 
G 4 HOH A 71 771 110 HOH HOH . 
G 4 HOH A 72 772 134 HOH HOH . 
G 4 HOH A 73 773 189 HOH HOH . 
G 4 HOH A 74 774 58 HOH HOH . 
G 4 HOH A 75 775 170 HOH HOH . 
G 4 HOH A 76 776 44 HOH HOH . 
G 4 HOH A 77 777 160 HOH HOH . 
G 4 HOH A 78 778 184 HOH HOH . 
G 4 HOH A 79 779 120 HOH HOH . 
G 4 HOH A 80 780 49 HOH HOH . 
G 4 HOH A 81 781 172 HOH HOH . 
G 4 HOH A 82 782 145 HOH HOH . 
G 4 HOH A 83 783 175 HOH HOH . 
G 4 HOH A 84 784 155 HOH HOH . 
G 4 HOH A 85 785 182 HOH HOH . 
G 4 HOH A 86 786 195 HOH HOH . 
G 4 HOH A 87 787 171 HOH HOH . 
G 4 HOH A 88 788 150 HOH HOH . 
G 4 HOH A 89 789 167 HOH HOH . 
G 4 HOH A 90 790 103 HOH HOH . 
G 4 HOH A 91 791 137 HOH HOH . 
G 4 HOH A 92 792 114 HOH HOH . 
G 4 HOH A 93 793 181 HOH HOH . 
G 4 HOH A 94 794 169 HOH HOH . 
H 4 HOH B 1 701 26 HOH HOH . 
H 4 HOH B 2 702 116 HOH HOH . 
H 4 HOH B 3 703 28 HOH HOH . 
H 4 HOH B 4 704 72 HOH HOH . 
H 4 HOH B 5 705 37 HOH HOH . 
H 4 HOH B 6 706 55 HOH HOH . 
H 4 HOH B 7 707 132 HOH HOH . 
H 4 HOH B 8 708 31 HOH HOH . 
H 4 HOH B 9 709 21 HOH HOH . 
H 4 HOH B 10 710 80 HOH HOH . 
H 4 HOH B 11 711 88 HOH HOH . 
H 4 HOH B 12 712 53 HOH HOH . 
H 4 HOH B 13 713 96 HOH HOH . 
H 4 HOH B 14 714 130 HOH HOH . 
H 4 HOH B 15 715 106 HOH HOH . 
H 4 HOH B 16 716 27 HOH HOH . 
H 4 HOH B 17 717 115 HOH HOH . 
H 4 HOH B 18 718 47 HOH HOH . 
H 4 HOH B 19 719 165 HOH HOH . 
H 4 HOH B 20 720 64 HOH HOH . 
H 4 HOH B 21 721 142 HOH HOH . 
H 4 HOH B 22 722 6 HOH HOH . 
H 4 HOH B 23 723 119 HOH HOH . 
H 4 HOH B 24 724 30 HOH HOH . 
H 4 HOH B 25 725 107 HOH HOH . 
H 4 HOH B 26 726 97 HOH HOH . 
H 4 HOH B 27 727 32 HOH HOH . 
H 4 HOH B 28 728 3 HOH HOH . 
H 4 HOH B 29 729 12 HOH HOH . 
H 4 HOH B 30 730 104 HOH HOH . 
H 4 HOH B 31 731 87 HOH HOH . 
H 4 HOH B 32 732 38 HOH HOH . 
H 4 HOH B 33 733 190 HOH HOH . 
H 4 HOH B 34 734 2 HOH HOH . 
H 4 HOH B 35 735 36 HOH HOH . 
H 4 HOH B 36 736 177 HOH HOH . 
H 4 HOH B 37 737 18 HOH HOH . 
H 4 HOH B 38 738 43 HOH HOH . 
H 4 HOH B 39 739 10 HOH HOH . 
H 4 HOH B 40 740 201 HOH HOH . 
H 4 HOH B 41 741 61 HOH HOH . 
H 4 HOH B 42 742 22 HOH HOH . 
H 4 HOH B 43 743 60 HOH HOH . 
H 4 HOH B 44 744 154 HOH HOH . 
H 4 HOH B 45 745 127 HOH HOH . 
H 4 HOH B 46 746 76 HOH HOH . 
H 4 HOH B 47 747 74 HOH HOH . 
H 4 HOH B 48 748 71 HOH HOH . 
H 4 HOH B 49 749 15 HOH HOH . 
H 4 HOH B 50 750 14 HOH HOH . 
H 4 HOH B 51 751 85 HOH HOH . 
H 4 HOH B 52 752 59 HOH HOH . 
H 4 HOH B 53 753 191 HOH HOH . 
H 4 HOH B 54 754 108 HOH HOH . 
H 4 HOH B 55 755 68 HOH HOH . 
H 4 HOH B 56 756 144 HOH HOH . 
H 4 HOH B 57 757 17 HOH HOH . 
H 4 HOH B 58 758 183 HOH HOH . 
H 4 HOH B 59 759 143 HOH HOH . 
H 4 HOH B 60 760 89 HOH HOH . 
H 4 HOH B 61 761 176 HOH HOH . 
H 4 HOH B 62 762 19 HOH HOH . 
H 4 HOH B 63 763 100 HOH HOH . 
H 4 HOH B 64 764 82 HOH HOH . 
H 4 HOH B 65 765 196 HOH HOH . 
H 4 HOH B 66 766 149 HOH HOH . 
H 4 HOH B 67 767 159 HOH HOH . 
H 4 HOH B 68 768 138 HOH HOH . 
H 4 HOH B 69 769 111 HOH HOH . 
H 4 HOH B 70 770 105 HOH HOH . 
H 4 HOH B 71 771 117 HOH HOH . 
H 4 HOH B 72 772 178 HOH HOH . 
H 4 HOH B 73 773 86 HOH HOH . 
H 4 HOH B 74 774 139 HOH HOH . 
H 4 HOH B 75 775 162 HOH HOH . 
H 4 HOH B 76 776 78 HOH HOH . 
H 4 HOH B 77 777 168 HOH HOH . 
H 4 HOH B 78 778 140 HOH HOH . 
H 4 HOH B 79 779 199 HOH HOH . 
H 4 HOH B 80 780 153 HOH HOH . 
H 4 HOH B 81 781 101 HOH HOH . 
H 4 HOH B 82 782 174 HOH HOH . 
H 4 HOH B 83 783 92 HOH HOH . 
H 4 HOH B 84 784 126 HOH HOH . 
H 4 HOH B 85 785 133 HOH HOH . 
H 4 HOH B 86 786 136 HOH HOH . 
H 4 HOH B 87 787 83 HOH HOH . 
H 4 HOH B 88 788 185 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAI LND . . . E 2 63.567 140.434 -9.672 1 76.89 ? CAI LND 601 B 1 
HETATM 2 C CAF LND . . . E 2 62.902 140.155 -8.51 1 98.26 ? CAF LND 601 B 1 
HETATM 3 C CAQ LND . . . E 2 62.64 141.185 -7.614 1 97.25 ? CAQ LND 601 B 1 
HETATM 4 C CAP LND . . . E 2 61.909 140.862 -6.346 1 103.05 ? CAP LND 601 B 1 
HETATM 5 O OAB LND . . . E 2 61.882 139.705 -5.927 1 108.59 ? OAB LND 601 B 1 
HETATM 6 N NAA LND . . . E 2 61.31 141.884 -5.741 1 96.97 ? NAA LND 601 B 1 
HETATM 7 C CAG LND . . . E 2 63.064 142.472 -7.925 1 86.72 ? CAG LND 601 B 1 
HETATM 8 C CAJ LND . . . E 2 63.729 142.696 -9.103 1 81.45 ? CAJ LND 601 B 1 
HETATM 9 N NAT LND . . . E 2 63.969 141.682 -9.944 1 70.05 ? NAT LND 601 B 1 
HETATM 10 C CAM LND . . . E 2 64.677 141.925 -11.215 1 63 ? CAM LND 601 B 1 
HETATM 11 C CAK LND . . . E 2 65.889 142.827 -11.096 1 60.14 ? CAK LND 601 B 1 
HETATM 12 C CAL LND . . . E 2 66.165 143.538 -12.424 1 66.19 ? CAL LND 601 B 1 
HETATM 13 N NAS LND . . . E 2 67.15 142.903 -13.307 1 79.49 ? NAS LND 601 B 1 
HETATM 14 C CAH LND . . . E 2 68.227 143.642 -13.726 1 87.8 ? CAH LND 601 B 1 
HETATM 15 C CAE LND . . . E 2 68.973 142.829 -14.537 1 77.01 ? CAE LND 601 B 1 
HETATM 16 N NAO LND . . . E 2 68.379 141.601 -14.634 1 76.77 ? NAO LND 601 B 1 
HETATM 17 C CAR LND . . . E 2 67.279 141.662 -13.89 1 70.41 ? CAR LND 601 B 1 
HETATM 18 C CAD LND . . . E 2 66.341 140.571 -13.709 1 81.69 ? CAD LND 601 B 1 
HETATM 19 N NAN LND . . . E 2 66.67 139.359 -13.964 1 104.23 ? NAN LND 601 B 1 
HETATM 20 O OAC LND . . . E 2 67.971 139.164 -14.417 1 86.63 ? OAC LND 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#