data_6O5S # _model_server_result.job_id KhBafSls_IavXloqMnd5HQ _model_server_result.datetime_utc '2024-11-23 22:30:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6O5S # _exptl.entry_id 6O5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.298 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O5S _cell.length_a 125.557 _cell.length_b 125.557 _cell.length_c 130.861 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x+y,-x,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -43.620333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 206 A SER 203 1_555 C P1 VX . A VX 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale2 B OG SER 206 B SER 203 1_555 F P1 VX . B VX 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? # _chem_comp.formula 'C13 H16 N5 O2 1' _chem_comp.formula_weight 274.298 _chem_comp.id LND _chem_comp.mon_nstd_flag . _chem_comp.name 4-carbamoyl-1-(3-{2-[(E)-(hydroxyimino)methyl]-1H-imidazol-1-yl}propyl)pyridin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAP LND doub 194 n n CAP NAA LND sing 195 n n CAP CAQ LND sing 196 n n CAQ CAF LND doub 197 n y CAQ CAG LND sing 198 n y CAF CAI LND sing 199 n y CAG CAJ LND doub 200 n y CAI NAT LND doub 201 n y CAJ NAT LND sing 202 n y NAT CAM LND sing 203 n n CAK CAM LND sing 204 n n CAK CAL LND sing 205 n n CAL NAS LND sing 206 n n CAH NAS LND sing 207 n y CAH CAE LND doub 208 n y NAS CAR LND sing 209 n y CAE NAO LND sing 210 n y CAR NAO LND doub 211 n y CAR CAD LND sing 212 n n CAD NAN LND doub 213 e n NAN OAC LND sing 214 n n CAI H1 LND sing 215 n n CAF H2 LND sing 216 n n NAA H3 LND sing 217 n n NAA H4 LND sing 218 n n CAG H5 LND sing 219 n n CAJ H6 LND sing 220 n n CAM H7 LND sing 221 n n CAM H8 LND sing 222 n n CAK H9 LND sing 223 n n CAK H10 LND sing 224 n n CAL H11 LND sing 225 n n CAL H12 LND sing 226 n n CAH H13 LND sing 227 n n CAE H14 LND sing 228 n n CAD H15 LND sing 229 n n OAC H16 LND sing 230 n n # _atom_sites.entry_id 6O5S _atom_sites.fract_transf_matrix[1][1] 0.007965 _atom_sites.fract_transf_matrix[1][2] 0.004598 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VX A 1 601 600 VX VX . D 3 LND A 1 602 1 LND DRG . E 2 VX A 1 603 1 VX VX . F 2 VX B 1 601 600 VX VX . G 3 LND B 1 602 2 LND DRG . H 2 VX B 1 603 2 VX VX . I 4 HOH A 1 701 152 HOH HOH . I 4 HOH A 2 702 100 HOH HOH . I 4 HOH A 3 703 139 HOH HOH . I 4 HOH A 4 704 173 HOH HOH . I 4 HOH A 5 705 125 HOH HOH . I 4 HOH A 6 706 46 HOH HOH . I 4 HOH A 7 707 163 HOH HOH . I 4 HOH A 8 708 17 HOH HOH . I 4 HOH A 9 709 90 HOH HOH . I 4 HOH A 10 710 140 HOH HOH . I 4 HOH A 11 711 132 HOH HOH . I 4 HOH A 12 712 38 HOH HOH . I 4 HOH A 13 713 4 HOH HOH . I 4 HOH A 14 714 95 HOH HOH . I 4 HOH A 15 715 102 HOH HOH . I 4 HOH A 16 716 96 HOH HOH . I 4 HOH A 17 717 101 HOH HOH . I 4 HOH A 18 718 167 HOH HOH . I 4 HOH A 19 719 178 HOH HOH . I 4 HOH A 20 720 9 HOH HOH . I 4 HOH A 21 721 87 HOH HOH . I 4 HOH A 22 722 24 HOH HOH . I 4 HOH A 23 723 172 HOH HOH . I 4 HOH A 24 724 70 HOH HOH . I 4 HOH A 25 725 26 HOH HOH . I 4 HOH A 26 726 16 HOH HOH . I 4 HOH A 27 727 15 HOH HOH . I 4 HOH A 28 728 86 HOH HOH . I 4 HOH A 29 729 154 HOH HOH . I 4 HOH A 30 730 118 HOH HOH . I 4 HOH A 31 731 5 HOH HOH . I 4 HOH A 32 732 168 HOH HOH . I 4 HOH A 33 733 36 HOH HOH . I 4 HOH A 34 734 8 HOH HOH . I 4 HOH A 35 735 42 HOH HOH . I 4 HOH A 36 736 123 HOH HOH . I 4 HOH A 37 737 69 HOH HOH . I 4 HOH A 38 738 6 HOH HOH . I 4 HOH A 39 739 138 HOH HOH . I 4 HOH A 40 740 58 HOH HOH . I 4 HOH A 41 741 98 HOH HOH . I 4 HOH A 42 742 136 HOH HOH . I 4 HOH A 43 743 50 HOH HOH . I 4 HOH A 44 744 19 HOH HOH . I 4 HOH A 45 745 51 HOH HOH . I 4 HOH A 46 746 160 HOH HOH . I 4 HOH A 47 747 57 HOH HOH . I 4 HOH A 48 748 72 HOH HOH . I 4 HOH A 49 749 33 HOH HOH . I 4 HOH A 50 750 112 HOH HOH . I 4 HOH A 51 751 62 HOH HOH . I 4 HOH A 52 752 21 HOH HOH . I 4 HOH A 53 753 122 HOH HOH . I 4 HOH A 54 754 164 HOH HOH . I 4 HOH A 55 755 108 HOH HOH . I 4 HOH A 56 756 121 HOH HOH . I 4 HOH A 57 757 39 HOH HOH . I 4 HOH A 58 758 134 HOH HOH . I 4 HOH A 59 759 137 HOH HOH . I 4 HOH A 60 760 78 HOH HOH . I 4 HOH A 61 761 29 HOH HOH . I 4 HOH A 62 762 165 HOH HOH . I 4 HOH A 63 763 56 HOH HOH . I 4 HOH A 64 764 170 HOH HOH . I 4 HOH A 65 765 84 HOH HOH . I 4 HOH A 66 766 150 HOH HOH . I 4 HOH A 67 767 77 HOH HOH . I 4 HOH A 68 768 117 HOH HOH . I 4 HOH A 69 769 161 HOH HOH . I 4 HOH A 70 770 151 HOH HOH . I 4 HOH A 71 771 61 HOH HOH . I 4 HOH A 72 772 105 HOH HOH . I 4 HOH A 73 773 23 HOH HOH . I 4 HOH A 74 774 166 HOH HOH . I 4 HOH A 75 775 73 HOH HOH . I 4 HOH A 76 776 145 HOH HOH . I 4 HOH A 77 777 135 HOH HOH . I 4 HOH A 78 778 110 HOH HOH . I 4 HOH A 79 779 174 HOH HOH . I 4 HOH A 80 780 171 HOH HOH . I 4 HOH A 81 781 176 HOH HOH . I 4 HOH A 82 782 68 HOH HOH . I 4 HOH A 83 783 175 HOH HOH . I 4 HOH A 84 784 142 HOH HOH . I 4 HOH A 85 785 169 HOH HOH . J 4 HOH B 1 701 22 HOH HOH . J 4 HOH B 2 702 54 HOH HOH . J 4 HOH B 3 703 52 HOH HOH . J 4 HOH B 4 704 91 HOH HOH . J 4 HOH B 5 705 43 HOH HOH . J 4 HOH B 6 706 81 HOH HOH . J 4 HOH B 7 707 1 HOH HOH . J 4 HOH B 8 708 49 HOH HOH . J 4 HOH B 9 709 155 HOH HOH . J 4 HOH B 10 710 11 HOH HOH . J 4 HOH B 11 711 144 HOH HOH . J 4 HOH B 12 712 114 HOH HOH . J 4 HOH B 13 713 158 HOH HOH . J 4 HOH B 14 714 124 HOH HOH . J 4 HOH B 15 715 92 HOH HOH . J 4 HOH B 16 716 41 HOH HOH . J 4 HOH B 17 717 89 HOH HOH . J 4 HOH B 18 718 7 HOH HOH . J 4 HOH B 19 719 94 HOH HOH . J 4 HOH B 20 720 75 HOH HOH . J 4 HOH B 21 721 32 HOH HOH . J 4 HOH B 22 722 79 HOH HOH . J 4 HOH B 23 723 25 HOH HOH . J 4 HOH B 24 724 111 HOH HOH . J 4 HOH B 25 725 30 HOH HOH . J 4 HOH B 26 726 80 HOH HOH . J 4 HOH B 27 727 181 HOH HOH . J 4 HOH B 28 728 162 HOH HOH . J 4 HOH B 29 729 93 HOH HOH . J 4 HOH B 30 730 13 HOH HOH . J 4 HOH B 31 731 10 HOH HOH . J 4 HOH B 32 732 130 HOH HOH . J 4 HOH B 33 733 143 HOH HOH . J 4 HOH B 34 734 31 HOH HOH . J 4 HOH B 35 735 12 HOH HOH . J 4 HOH B 36 736 88 HOH HOH . J 4 HOH B 37 737 2 HOH HOH . J 4 HOH B 38 738 28 HOH HOH . J 4 HOH B 39 739 35 HOH HOH . J 4 HOH B 40 740 3 HOH HOH . J 4 HOH B 41 741 119 HOH HOH . J 4 HOH B 42 742 20 HOH HOH . J 4 HOH B 43 743 156 HOH HOH . J 4 HOH B 44 744 45 HOH HOH . J 4 HOH B 45 745 18 HOH HOH . J 4 HOH B 46 746 14 HOH HOH . J 4 HOH B 47 747 40 HOH HOH . J 4 HOH B 48 748 127 HOH HOH . J 4 HOH B 49 749 147 HOH HOH . J 4 HOH B 50 750 85 HOH HOH . J 4 HOH B 51 751 34 HOH HOH . J 4 HOH B 52 752 146 HOH HOH . J 4 HOH B 53 753 64 HOH HOH . J 4 HOH B 54 754 183 HOH HOH . J 4 HOH B 55 755 133 HOH HOH . J 4 HOH B 56 756 83 HOH HOH . J 4 HOH B 57 757 76 HOH HOH . J 4 HOH B 58 758 187 HOH HOH . J 4 HOH B 59 759 97 HOH HOH . J 4 HOH B 60 760 27 HOH HOH . J 4 HOH B 61 761 109 HOH HOH . J 4 HOH B 62 762 59 HOH HOH . J 4 HOH B 63 763 37 HOH HOH . J 4 HOH B 64 764 188 HOH HOH . J 4 HOH B 65 765 106 HOH HOH . J 4 HOH B 66 766 82 HOH HOH . J 4 HOH B 67 767 63 HOH HOH . J 4 HOH B 68 768 179 HOH HOH . J 4 HOH B 69 769 116 HOH HOH . J 4 HOH B 70 770 65 HOH HOH . J 4 HOH B 71 771 149 HOH HOH . J 4 HOH B 72 772 71 HOH HOH . J 4 HOH B 73 773 120 HOH HOH . J 4 HOH B 74 774 48 HOH HOH . J 4 HOH B 75 775 153 HOH HOH . J 4 HOH B 76 776 186 HOH HOH . J 4 HOH B 77 777 185 HOH HOH . J 4 HOH B 78 778 190 HOH HOH . J 4 HOH B 79 779 189 HOH HOH . J 4 HOH B 80 780 141 HOH HOH . J 4 HOH B 81 781 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI LND . . . D 3 28.551 -17.282 -4.805 1 83.81 ? CAI LND 602 A 1 HETATM 2 C CAF LND . . . D 3 28.926 -16.628 -3.658 1 93.94 ? CAF LND 602 A 1 HETATM 3 C CAQ LND . . . D 3 28.05 -15.723 -3.069 1 110.98 ? CAQ LND 602 A 1 HETATM 4 C CAP LND . . . D 3 28.466 -15.012 -1.818 1 112.91 ? CAP LND 602 A 1 HETATM 5 O OAB LND . . . D 3 27.632 -14.39 -1.161 1 127.76 ? OAB LND 602 A 1 HETATM 6 N NAA LND . . . D 3 29.757 -15.092 -1.503 1 84.65 ? NAA LND 602 A 1 HETATM 7 C CAG LND . . . D 3 26.814 -15.503 -3.663 1 106.2 ? CAG LND 602 A 1 HETATM 8 C CAJ LND . . . D 3 26.493 -16.181 -4.808 1 94.35 ? CAJ LND 602 A 1 HETATM 9 N NAT LND . . . D 3 27.35 -17.053 -5.355 1 92.82 ? NAT LND 602 A 1 HETATM 10 C CAM LND . . . D 3 26.948 -17.749 -6.596 1 84.35 ? CAM LND 602 A 1 HETATM 11 C CAK LND . . . D 3 27.227 -19.245 -6.594 1 77.77 ? CAK LND 602 A 1 HETATM 12 C CAL LND . . . D 3 27.268 -19.827 -8.015 1 64.74 ? CAL LND 602 A 1 HETATM 13 N NAS LND . . . D 3 25.962 -20.037 -8.648 1 80.94 ? NAS LND 602 A 1 HETATM 14 C CAH LND . . . D 3 24.821 -19.32 -8.388 1 84.75 ? CAH LND 602 A 1 HETATM 15 C CAE LND . . . D 3 23.842 -19.833 -9.192 1 82.24 ? CAE LND 602 A 1 HETATM 16 N NAO LND . . . D 3 24.348 -20.852 -9.951 1 78.67 ? NAO LND 602 A 1 HETATM 17 C CAR LND . . . D 3 25.628 -20.961 -9.609 1 77.44 ? CAR LND 602 A 1 HETATM 18 C CAD LND . . . D 3 26.568 -21.918 -10.161 1 74.08 ? CAD LND 602 A 1 HETATM 19 N NAN LND . . . D 3 27.109 -22.816 -9.424 1 78.48 ? NAN LND 602 A 1 HETATM 20 O OAC LND . . . D 3 27.993 -23.674 -10.069 1 88.91 ? OAC LND 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #