data_6O5S # _model_server_result.job_id a2zLlugUULmtVMKC7vu2gQ _model_server_result.datetime_utc '2024-11-23 22:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6O5S # _exptl.entry_id 6O5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 124.076 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O5S _cell.length_a 125.557 _cell.length_b 125.557 _cell.length_c 130.861 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x+y,-x,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -43.620333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 206 A SER 203 1_555 C P1 VX . A VX 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale2 B OG SER 206 B SER 203 1_555 F P1 VX . B VX 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? # _chem_comp.formula 'C3 H9 O3 P' _chem_comp.formula_weight 124.076 _chem_comp.id VX _chem_comp.mon_nstd_flag . _chem_comp.name 'O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 VX doub 413 n n P1 O2 VX sing 414 n n P1 C1 VX sing 415 n n O2 C2 VX sing 416 n n C1 H1 VX sing 417 n n C1 H2 VX sing 418 n n C1 H3 VX sing 419 n n C2 C3 VX sing 420 n n C2 H21 VX sing 421 n n C2 H22 VX sing 422 n n C3 H31 VX sing 423 n n C3 H32 VX sing 424 n n C3 H33 VX sing 425 n n P1 O3 VX sing 426 n n O3 H3O VX sing 427 n n # _atom_sites.entry_id 6O5S _atom_sites.fract_transf_matrix[1][1] 0.007965 _atom_sites.fract_transf_matrix[1][2] 0.004598 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VX A 1 601 600 VX VX . D 3 LND A 1 602 1 LND DRG . E 2 VX A 1 603 1 VX VX . F 2 VX B 1 601 600 VX VX . G 3 LND B 1 602 2 LND DRG . H 2 VX B 1 603 2 VX VX . I 4 HOH A 1 701 152 HOH HOH . I 4 HOH A 2 702 100 HOH HOH . I 4 HOH A 3 703 139 HOH HOH . I 4 HOH A 4 704 173 HOH HOH . I 4 HOH A 5 705 125 HOH HOH . I 4 HOH A 6 706 46 HOH HOH . I 4 HOH A 7 707 163 HOH HOH . I 4 HOH A 8 708 17 HOH HOH . I 4 HOH A 9 709 90 HOH HOH . I 4 HOH A 10 710 140 HOH HOH . I 4 HOH A 11 711 132 HOH HOH . I 4 HOH A 12 712 38 HOH HOH . I 4 HOH A 13 713 4 HOH HOH . I 4 HOH A 14 714 95 HOH HOH . I 4 HOH A 15 715 102 HOH HOH . I 4 HOH A 16 716 96 HOH HOH . I 4 HOH A 17 717 101 HOH HOH . I 4 HOH A 18 718 167 HOH HOH . I 4 HOH A 19 719 178 HOH HOH . I 4 HOH A 20 720 9 HOH HOH . I 4 HOH A 21 721 87 HOH HOH . I 4 HOH A 22 722 24 HOH HOH . I 4 HOH A 23 723 172 HOH HOH . I 4 HOH A 24 724 70 HOH HOH . I 4 HOH A 25 725 26 HOH HOH . I 4 HOH A 26 726 16 HOH HOH . I 4 HOH A 27 727 15 HOH HOH . I 4 HOH A 28 728 86 HOH HOH . I 4 HOH A 29 729 154 HOH HOH . I 4 HOH A 30 730 118 HOH HOH . I 4 HOH A 31 731 5 HOH HOH . I 4 HOH A 32 732 168 HOH HOH . I 4 HOH A 33 733 36 HOH HOH . I 4 HOH A 34 734 8 HOH HOH . I 4 HOH A 35 735 42 HOH HOH . I 4 HOH A 36 736 123 HOH HOH . I 4 HOH A 37 737 69 HOH HOH . I 4 HOH A 38 738 6 HOH HOH . I 4 HOH A 39 739 138 HOH HOH . I 4 HOH A 40 740 58 HOH HOH . I 4 HOH A 41 741 98 HOH HOH . I 4 HOH A 42 742 136 HOH HOH . I 4 HOH A 43 743 50 HOH HOH . I 4 HOH A 44 744 19 HOH HOH . I 4 HOH A 45 745 51 HOH HOH . I 4 HOH A 46 746 160 HOH HOH . I 4 HOH A 47 747 57 HOH HOH . I 4 HOH A 48 748 72 HOH HOH . I 4 HOH A 49 749 33 HOH HOH . I 4 HOH A 50 750 112 HOH HOH . I 4 HOH A 51 751 62 HOH HOH . I 4 HOH A 52 752 21 HOH HOH . I 4 HOH A 53 753 122 HOH HOH . I 4 HOH A 54 754 164 HOH HOH . I 4 HOH A 55 755 108 HOH HOH . I 4 HOH A 56 756 121 HOH HOH . I 4 HOH A 57 757 39 HOH HOH . I 4 HOH A 58 758 134 HOH HOH . I 4 HOH A 59 759 137 HOH HOH . I 4 HOH A 60 760 78 HOH HOH . I 4 HOH A 61 761 29 HOH HOH . I 4 HOH A 62 762 165 HOH HOH . I 4 HOH A 63 763 56 HOH HOH . I 4 HOH A 64 764 170 HOH HOH . I 4 HOH A 65 765 84 HOH HOH . I 4 HOH A 66 766 150 HOH HOH . I 4 HOH A 67 767 77 HOH HOH . I 4 HOH A 68 768 117 HOH HOH . I 4 HOH A 69 769 161 HOH HOH . I 4 HOH A 70 770 151 HOH HOH . I 4 HOH A 71 771 61 HOH HOH . I 4 HOH A 72 772 105 HOH HOH . I 4 HOH A 73 773 23 HOH HOH . I 4 HOH A 74 774 166 HOH HOH . I 4 HOH A 75 775 73 HOH HOH . I 4 HOH A 76 776 145 HOH HOH . I 4 HOH A 77 777 135 HOH HOH . I 4 HOH A 78 778 110 HOH HOH . I 4 HOH A 79 779 174 HOH HOH . I 4 HOH A 80 780 171 HOH HOH . I 4 HOH A 81 781 176 HOH HOH . I 4 HOH A 82 782 68 HOH HOH . I 4 HOH A 83 783 175 HOH HOH . I 4 HOH A 84 784 142 HOH HOH . I 4 HOH A 85 785 169 HOH HOH . J 4 HOH B 1 701 22 HOH HOH . J 4 HOH B 2 702 54 HOH HOH . J 4 HOH B 3 703 52 HOH HOH . J 4 HOH B 4 704 91 HOH HOH . J 4 HOH B 5 705 43 HOH HOH . J 4 HOH B 6 706 81 HOH HOH . J 4 HOH B 7 707 1 HOH HOH . J 4 HOH B 8 708 49 HOH HOH . J 4 HOH B 9 709 155 HOH HOH . J 4 HOH B 10 710 11 HOH HOH . J 4 HOH B 11 711 144 HOH HOH . J 4 HOH B 12 712 114 HOH HOH . J 4 HOH B 13 713 158 HOH HOH . J 4 HOH B 14 714 124 HOH HOH . J 4 HOH B 15 715 92 HOH HOH . J 4 HOH B 16 716 41 HOH HOH . J 4 HOH B 17 717 89 HOH HOH . J 4 HOH B 18 718 7 HOH HOH . J 4 HOH B 19 719 94 HOH HOH . J 4 HOH B 20 720 75 HOH HOH . J 4 HOH B 21 721 32 HOH HOH . J 4 HOH B 22 722 79 HOH HOH . J 4 HOH B 23 723 25 HOH HOH . J 4 HOH B 24 724 111 HOH HOH . J 4 HOH B 25 725 30 HOH HOH . J 4 HOH B 26 726 80 HOH HOH . J 4 HOH B 27 727 181 HOH HOH . J 4 HOH B 28 728 162 HOH HOH . J 4 HOH B 29 729 93 HOH HOH . J 4 HOH B 30 730 13 HOH HOH . J 4 HOH B 31 731 10 HOH HOH . J 4 HOH B 32 732 130 HOH HOH . J 4 HOH B 33 733 143 HOH HOH . J 4 HOH B 34 734 31 HOH HOH . J 4 HOH B 35 735 12 HOH HOH . J 4 HOH B 36 736 88 HOH HOH . J 4 HOH B 37 737 2 HOH HOH . J 4 HOH B 38 738 28 HOH HOH . J 4 HOH B 39 739 35 HOH HOH . J 4 HOH B 40 740 3 HOH HOH . J 4 HOH B 41 741 119 HOH HOH . J 4 HOH B 42 742 20 HOH HOH . J 4 HOH B 43 743 156 HOH HOH . J 4 HOH B 44 744 45 HOH HOH . J 4 HOH B 45 745 18 HOH HOH . J 4 HOH B 46 746 14 HOH HOH . J 4 HOH B 47 747 40 HOH HOH . J 4 HOH B 48 748 127 HOH HOH . J 4 HOH B 49 749 147 HOH HOH . J 4 HOH B 50 750 85 HOH HOH . J 4 HOH B 51 751 34 HOH HOH . J 4 HOH B 52 752 146 HOH HOH . J 4 HOH B 53 753 64 HOH HOH . J 4 HOH B 54 754 183 HOH HOH . J 4 HOH B 55 755 133 HOH HOH . J 4 HOH B 56 756 83 HOH HOH . J 4 HOH B 57 757 76 HOH HOH . J 4 HOH B 58 758 187 HOH HOH . J 4 HOH B 59 759 97 HOH HOH . J 4 HOH B 60 760 27 HOH HOH . J 4 HOH B 61 761 109 HOH HOH . J 4 HOH B 62 762 59 HOH HOH . J 4 HOH B 63 763 37 HOH HOH . J 4 HOH B 64 764 188 HOH HOH . J 4 HOH B 65 765 106 HOH HOH . J 4 HOH B 66 766 82 HOH HOH . J 4 HOH B 67 767 63 HOH HOH . J 4 HOH B 68 768 179 HOH HOH . J 4 HOH B 69 769 116 HOH HOH . J 4 HOH B 70 770 65 HOH HOH . J 4 HOH B 71 771 149 HOH HOH . J 4 HOH B 72 772 71 HOH HOH . J 4 HOH B 73 773 120 HOH HOH . J 4 HOH B 74 774 48 HOH HOH . J 4 HOH B 75 775 153 HOH HOH . J 4 HOH B 76 776 186 HOH HOH . J 4 HOH B 77 777 185 HOH HOH . J 4 HOH B 78 778 190 HOH HOH . J 4 HOH B 79 779 189 HOH HOH . J 4 HOH B 80 780 141 HOH HOH . J 4 HOH B 81 781 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 VX . . . H 2 38.436 -12.362 17.441 0.7 60.34 ? P1 VX 603 B 1 HETATM 2 O O1 VX . . . H 2 39.721 -11.577 17.323 0.7 51.83 ? O1 VX 603 B 1 HETATM 3 O O2 VX . . . H 2 38.23 -13.302 16.102 0.7 54.78 ? O2 VX 603 B 1 HETATM 4 C C1 VX . . . H 2 38.494 -13.444 18.951 0.7 38.86 ? C1 VX 603 B 1 HETATM 5 C C2 VX . . . H 2 38.109 -12.677 14.856 0.7 51.22 ? C2 VX 603 B 1 HETATM 6 C C3 VX . . . H 2 37.275 -13.557 13.929 0.7 46.58 ? C3 VX 603 B 1 HETATM 7 O O3 VX . . . H 2 37.276 -11.407 17.571 0.7 61.9 ? O3 VX 603 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #