data_6O5Y # _model_server_result.job_id 8-U4dbfi4eHbdI8tzRZ0qQ _model_server_result.datetime_utc '2024-10-16 23:35:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6O5Y # _exptl.entry_id 6O5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O5Y _cell.length_a 65.147 _cell.length_b 195.897 _cell.length_c 236.976 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,K 1 1 B,G,H,L 2 1 C,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 430 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 457 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.659 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6O5Y _atom_sites.fract_transf_matrix[1][1] 0.01535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 601 HEM HEM . F 3 KUV A 1 602 1 KUV LIG . G 2 HEM B 1 601 601 HEM HEM . H 4 NO3 B 1 602 1 NO3 NO3 . I 2 HEM C 1 601 601 HEM HEM . J 2 HEM D 1 601 601 HEM HEM . K 5 HOH A 1 701 8 HOH HOH . K 5 HOH A 2 702 3 HOH HOH . K 5 HOH A 3 703 2 HOH HOH . K 5 HOH A 4 704 9 HOH HOH . K 5 HOH A 5 705 7 HOH HOH . K 5 HOH A 6 706 1 HOH HOH . L 5 HOH B 1 701 10 HOH HOH . L 5 HOH B 2 702 5 HOH HOH . L 5 HOH B 3 703 4 HOH HOH . L 5 HOH B 4 704 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 5.164 17.812 10.82 1 60.88 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . E 2 7.941 14.024 12.048 1 58.71 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . E 2 4.138 11.06 11.773 1 61.99 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . E 2 1.368 14.864 10.658 1 64.48 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . E 2 6.241 17.028 11.155 1 60.2 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . E 2 7.595 17.503 11.281 1 58.58 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . E 2 8.372 16.458 11.614 1 58.22 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . E 2 7.521 15.294 11.724 1 58.84 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . E 2 9.894 16.436 11.862 1 56.41 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . E 2 7.956 18.977 11.013 1 56.86 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . E 2 8.914 19.57 12.032 1 56.18 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . E 2 8.994 21.049 11.756 1 55.08 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . E 2 9.832 21.735 12.393 1 54.87 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . E 2 8.218 21.543 10.894 1 55.39 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . E 2 7.171 12.884 12.027 1 59.84 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . E 2 7.649 11.525 12.19 1 60.15 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . E 2 6.595 10.702 12.104 1 60.48 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . E 2 5.421 11.52 11.904 1 61.07 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . E 2 9.131 11.139 12.4 1 58.58 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . E 2 6.551 9.162 12.231 1 60.91 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . E 2 7.556 8.482 12.79 1 60.28 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . E 2 3.057 11.848 11.478 1 63.6 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . E 2 1.687 11.401 11.402 1 65.35 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . E 2 0.93 12.466 11.1 1 65.67 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . E 2 1.802 13.603 10.969 1 64.62 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . E 2 1.247 9.941 11.648 1 66.28 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . E 2 -0.594 12.593 10.879 1 67.5 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . E 2 -1.386 11.527 10.766 1 67.93 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . E 2 2.154 15.975 10.54 1 63.32 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . E 2 1.72 17.254 10.04 1 63.78 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . E 2 2.763 18.083 10.082 1 63.54 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . E 2 3.894 17.348 10.61 1 62.15 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . E 2 0.294 17.576 9.551 1 66.43 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . E 2 2.756 19.557 9.638 1 64.27 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . E 2 3.309 20.427 10.759 1 63.39 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . E 2 2.84 21.839 10.544 1 64.93 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . E 2 2.922 22.653 11.499 1 65.16 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . E 2 2.372 22.15 9.419 1 66.52 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . E 2 6.227 15.676 11.439 1 60.06 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . E 2 5.806 12.842 11.856 1 60.16 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . E 2 3.097 13.2 11.209 1 63.37 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . E 2 3.484 16.06 10.883 1 62.41 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . E 2 4.669 14.438 11.395 1 58.75 ? FE HEM 601 A 1 HETATM 44 H HHB HEM . . . E 2 8.877 13.922 12.321 1 71.71 ? HHB HEM 601 A 1 HETATM 45 H HHC HEM . . . E 2 3.982 10.101 11.899 1 75.66 ? HHC HEM 601 A 1 HETATM 46 H HHD HEM . . . E 2 0.407 14.98 10.506 1 78.64 ? HHD HEM 601 A 1 HETATM 47 H HMA HEM . . . E 2 10.357 16.822 11.09 1 68.96 ? HMA HEM 601 A 1 HETATM 48 H HMAA HEM . . . E 2 10.191 15.511 11.992 1 68.96 ? HMAA HEM 601 A 1 HETATM 49 H HMAB HEM . . . E 2 10.102 16.96 12.664 1 68.96 ? HMAB HEM 601 A 1 HETATM 50 H HAA HEM . . . E 2 7.139 19.499 11.023 1 69.49 ? HAA HEM 601 A 1 HETATM 51 H HAAA HEM . . . E 2 8.368 19.037 10.136 1 69.49 ? HAAA HEM 601 A 1 HETATM 52 H HBA HEM . . . E 2 9.792 19.166 11.938 1 68.68 ? HBA HEM 601 A 1 HETATM 53 H HBAA HEM . . . E 2 8.582 19.417 12.93 1 68.68 ? HBAA HEM 601 A 1 HETATM 54 H HMB HEM . . . E 2 9.699 11.87 12.11 1 71.57 ? HMB HEM 601 A 1 HETATM 55 H HMBA HEM . . . E 2 9.335 10.346 11.881 1 71.57 ? HMBA HEM 601 A 1 HETATM 56 H HMBB HEM . . . E 2 9.289 10.96 13.34 1 71.57 ? HMBB HEM 601 A 1 HETATM 57 H HAB HEM . . . E 2 5.787 8.685 11.902 1 74.35 ? HAB HEM 601 A 1 HETATM 58 H HBB HEM . . . E 2 7.508 7.516 12.86 1 73.61 ? HBB HEM 601 A 1 HETATM 59 H HBBA HEM . . . E 2 8.333 8.955 13.126 1 73.61 ? HBBA HEM 601 A 1 HETATM 60 H HMC HEM . . . E 2 0.349 9.931 12.015 1 80.8 ? HMC HEM 601 A 1 HETATM 61 H HMCA HEM . . . E 2 1.856 9.52 12.274 1 80.8 ? HMCA HEM 601 A 1 HETATM 62 H HMCB HEM . . . E 2 1.258 9.454 10.809 1 80.8 ? HMCB HEM 601 A 1 HETATM 63 H HAC HEM . . . E 2 -0.984 13.469 10.822 1 82.27 ? HAC HEM 601 A 1 HETATM 64 H HBC HEM . . . E 2 -2.339 11.643 10.628 1 82.78 ? HBC HEM 601 A 1 HETATM 65 H HBCA HEM . . . E 2 -1.009 10.635 10.822 1 82.78 ? HBCA HEM 601 A 1 HETATM 66 H HMD HEM . . . E 2 0.097 18.522 9.716 1 80.98 ? HMD HEM 601 A 1 HETATM 67 H HMDA HEM . . . E 2 -0.352 17.02 10.034 1 80.98 ? HMDA HEM 601 A 1 HETATM 68 H HMDB HEM . . . E 2 0.228 17.392 8.59 1 80.98 ? HMDB HEM 601 A 1 HETATM 69 H HAD HEM . . . E 2 1.848 19.83 9.435 1 78.39 ? HAD HEM 601 A 1 HETATM 70 H HADA HEM . . . E 2 3.309 19.659 8.847 1 78.39 ? HADA HEM 601 A 1 HETATM 71 H HBD HEM . . . E 2 4.279 20.399 10.747 1 77.33 ? HBD HEM 601 A 1 HETATM 72 H HBDA HEM . . . E 2 2.987 20.102 11.614 1 77.33 ? HBDA HEM 601 A 1 HETATM 73 H HHA HEM . . . E 2 5.316 18.775 10.724 1 74.32 ? HHA HEM 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 73 #