data_6O5Y # _model_server_result.job_id vcO6NLOyqTui1XnZpKBN5Q _model_server_result.datetime_utc '2024-11-23 13:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 6O5Y # _exptl.entry_id 6O5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O5Y _cell.length_a 65.147 _cell.length_b 195.897 _cell.length_c 236.976 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,K 1 1 B,G,H,L 2 1 C,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 430 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 457 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.659 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6O5Y _atom_sites.fract_transf_matrix[1][1] 0.01535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 601 HEM HEM . F 3 KUV A 1 602 1 KUV LIG . G 2 HEM B 1 601 601 HEM HEM . H 4 NO3 B 1 602 1 NO3 NO3 . I 2 HEM C 1 601 601 HEM HEM . J 2 HEM D 1 601 601 HEM HEM . K 5 HOH A 1 701 8 HOH HOH . K 5 HOH A 2 702 3 HOH HOH . K 5 HOH A 3 703 2 HOH HOH . K 5 HOH A 4 704 9 HOH HOH . K 5 HOH A 5 705 7 HOH HOH . K 5 HOH A 6 706 1 HOH HOH . L 5 HOH B 1 701 10 HOH HOH . L 5 HOH B 2 702 5 HOH HOH . L 5 HOH B 3 703 4 HOH HOH . L 5 HOH B 4 704 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 2 13.604 12.43 54.351 1 76.54 ? CHA HEM 601 C 1 HETATM 2 C CHB HEM . . . I 2 10.665 8.607 53.843 1 71.99 ? CHB HEM 601 C 1 HETATM 3 C CHC HEM . . . I 2 14.521 5.766 53.051 1 71.75 ? CHC HEM 601 C 1 HETATM 4 C CHD HEM . . . I 2 17.405 9.653 53.288 1 75.04 ? CHD HEM 601 C 1 HETATM 5 C C1A HEM . . . I 2 12.498 11.62 54.347 1 74.98 ? C1A HEM 601 C 1 HETATM 6 C C2A HEM . . . I 2 11.176 12.034 54.744 1 75.78 ? C2A HEM 601 C 1 HETATM 7 C C3A HEM . . . I 2 10.356 10.988 54.615 1 74.07 ? C3A HEM 601 C 1 HETATM 8 C C4A HEM . . . I 2 11.135 9.872 54.115 1 73.01 ? C4A HEM 601 C 1 HETATM 9 C CMA HEM . . . I 2 8.844 10.956 54.926 1 74.2 ? CMA HEM 601 C 1 HETATM 10 C CAA HEM . . . I 2 10.842 13.454 55.248 1 78.29 ? CAA HEM 601 C 1 HETATM 11 C CBA HEM . . . I 2 9.78 14.114 54.377 1 80.31 ? CBA HEM 601 C 1 HETATM 12 C CGA HEM . . . I 2 9.64 15.556 54.789 1 81.26 ? CGA HEM 601 C 1 HETATM 13 O O1A HEM . . . I 2 8.8 16.276 54.191 1 82.58 ? O1A HEM 601 C 1 HETATM 14 O O2A HEM . . . I 2 10.369 15.989 55.717 1 82.04 ? O2A HEM 601 C 1 HETATM 15 C C1B HEM . . . I 2 11.448 7.495 53.625 1 71.4 ? C1B HEM 601 C 1 HETATM 16 C C2B HEM . . . I 2 10.988 6.123 53.531 1 70.54 ? C2B HEM 601 C 1 HETATM 17 C C3B HEM . . . I 2 12.06 5.342 53.323 1 70.37 ? C3B HEM 601 C 1 HETATM 18 C C4B HEM . . . I 2 13.227 6.193 53.262 1 71.4 ? C4B HEM 601 C 1 HETATM 19 C CMB HEM . . . I 2 9.512 5.689 53.673 1 70.18 ? CMB HEM 601 C 1 HETATM 20 C CAB HEM . . . I 2 12.126 3.809 53.131 1 69.39 ? CAB HEM 601 C 1 HETATM 21 C CBB HEM . . . I 2 11.033 3.099 52.843 1 68.47 ? CBB HEM 601 C 1 HETATM 22 C C1C HEM . . . I 2 15.635 6.573 52.987 1 72.95 ? C1C HEM 601 C 1 HETATM 23 C C2C HEM . . . I 2 16.972 6.169 52.601 1 73.88 ? C2C HEM 601 C 1 HETATM 24 C C3C HEM . . . I 2 17.773 7.247 52.661 1 74.45 ? C3C HEM 601 C 1 HETATM 25 C C4C HEM . . . I 2 16.963 8.365 53.095 1 74.21 ? C4C HEM 601 C 1 HETATM 26 C CMC HEM . . . I 2 17.349 4.73 52.191 1 74.25 ? CMC HEM 601 C 1 HETATM 27 C CAC HEM . . . I 2 19.289 7.361 52.359 1 77.15 ? CAC HEM 601 C 1 HETATM 28 C CBC HEM . . . I 2 20.06 6.292 52.128 1 77.9 ? CBC HEM 601 C 1 HETATM 29 C C1D HEM . . . I 2 16.626 10.732 53.634 1 75.43 ? C1D HEM 601 C 1 HETATM 30 C C2D HEM . . . I 2 17.121 12.058 53.916 1 77.28 ? C2D HEM 601 C 1 HETATM 31 C C3D HEM . . . I 2 16.076 12.851 54.21 1 78.62 ? C3D HEM 601 C 1 HETATM 32 C C4D HEM . . . I 2 14.89 12.025 54.125 1 76.26 ? C4D HEM 601 C 1 HETATM 33 C CMD HEM . . . I 2 18.621 12.422 53.86 1 79.96 ? CMD HEM 601 C 1 HETATM 34 C CAD HEM . . . I 2 16.104 14.358 54.586 1 82.4 ? CAD HEM 601 C 1 HETATM 35 C CBD HEM . . . I 2 14.984 15.118 53.87 1 83.61 ? CBD HEM 601 C 1 HETATM 36 C CGD HEM . . . I 2 15.304 16.587 53.753 1 88.55 ? CGD HEM 601 C 1 HETATM 37 O O1D HEM . . . I 2 14.803 17.236 52.795 1 89.87 ? O1D HEM 601 C 1 HETATM 38 O O2D HEM . . . I 2 16.066 17.108 54.606 1 90.38 ? O2D HEM 601 C 1 HETATM 39 N NA HEM . . . I 2 12.443 10.295 53.964 1 73.25 ? NA HEM 601 C 1 HETATM 40 N NB HEM . . . I 2 12.819 7.498 53.457 1 71.65 ? NB HEM 601 C 1 HETATM 41 N NC HEM . . . I 2 15.67 7.92 53.282 1 73.37 ? NC HEM 601 C 1 HETATM 42 N ND HEM . . . I 2 15.256 10.743 53.77 1 74.93 ? ND HEM 601 C 1 HETATM 43 FE FE HEM . . . I 2 14.061 9.095 53.754 1 72.58 ? FE HEM 601 C 1 HETATM 44 H HHB HEM . . . I 2 9.693 8.488 53.802 1 87.65 ? HHB HEM 601 C 1 HETATM 45 H HHC HEM . . . I 2 14.66 4.803 52.937 1 87.37 ? HHC HEM 601 C 1 HETATM 46 H HHD HEM . . . I 2 18.363 9.816 53.168 1 91.32 ? HHD HEM 601 C 1 HETATM 47 H HMA HEM . . . I 2 8.687 11.311 55.826 1 90.3 ? HMA HEM 601 C 1 HETATM 48 H HMAA HEM . . . I 2 8.519 10.033 54.878 1 90.3 ? HMAA HEM 601 C 1 HETATM 49 H HMAB HEM . . . I 2 8.364 11.505 54.271 1 90.3 ? HMAB HEM 601 C 1 HETATM 50 H HAA HEM . . . I 2 11.648 13.994 55.228 1 95.21 ? HAA HEM 601 C 1 HETATM 51 H HAAA HEM . . . I 2 10.513 13.397 56.159 1 95.21 ? HAAA HEM 601 C 1 HETATM 52 H HBA HEM . . . I 2 8.932 13.658 54.495 1 97.64 ? HBA HEM 601 C 1 HETATM 53 H HBAA HEM . . . I 2 10.047 14.066 53.445 1 97.64 ? HBAA HEM 601 C 1 HETATM 54 H HMB HEM . . . I 2 9.023 6.362 54.171 1 85.49 ? HMB HEM 601 C 1 HETATM 55 H HMBA HEM . . . I 2 9.468 4.843 54.145 1 85.49 ? HMBA HEM 601 C 1 HETATM 56 H HMBB HEM . . . I 2 9.118 5.588 52.793 1 85.49 ? HMBB HEM 601 C 1 HETATM 57 H HAB HEM . . . I 2 12.969 3.36 53.222 1 84.54 ? HAB HEM 601 C 1 HETATM 58 H HBB HEM . . . I 2 11.097 2.138 52.727 1 83.43 ? HBB HEM 601 C 1 HETATM 59 H HBBA HEM . . . I 2 10.176 3.543 52.75 1 83.43 ? HBBA HEM 601 C 1 HETATM 60 H HMC HEM . . . I 2 17.941 4.757 51.423 1 90.37 ? HMC HEM 601 C 1 HETATM 61 H HMCA HEM . . . I 2 16.545 4.238 51.961 1 90.37 ? HMCA HEM 601 C 1 HETATM 62 H HMCB HEM . . . I 2 17.797 4.29 52.93 1 90.37 ? HMCB HEM 601 C 1 HETATM 63 H HAC HEM . . . I 2 19.691 8.232 52.337 1 93.84 ? HAC HEM 601 C 1 HETATM 64 H HBC HEM . . . I 2 21.005 6.407 51.943 1 94.74 ? HBC HEM 601 C 1 HETATM 65 H HBCA HEM . . . I 2 19.674 5.403 52.146 1 94.74 ? HBCA HEM 601 C 1 HETATM 66 H HMD HEM . . . I 2 18.728 13.388 53.985 1 97.21 ? HMD HEM 601 C 1 HETATM 67 H HMDA HEM . . . I 2 18.988 12.164 52.988 1 97.21 ? HMDA HEM 601 C 1 HETATM 68 H HMDB HEM . . . I 2 19.1 11.946 54.569 1 97.21 ? HMDB HEM 601 C 1 HETATM 69 H HAD HEM . . . I 2 16.959 14.735 54.326 1 100.14 ? HAD HEM 601 C 1 HETATM 70 H HADA HEM . . . I 2 15.988 14.449 55.544 1 100.14 ? HADA HEM 601 C 1 HETATM 71 H HBD HEM . . . I 2 14.161 15.014 54.373 1 101.6 ? HBD HEM 601 C 1 HETATM 72 H HBDA HEM . . . I 2 14.869 14.748 52.981 1 101.6 ? HBDA HEM 601 C 1 HETATM 73 H HHA HEM . . . I 2 13.46 13.383 54.532 1 93.11 ? HHA HEM 601 C 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 448 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 73 #