data_6O5Y # _model_server_result.job_id A7aYkmrSIe51XSBUu7OKlw _model_server_result.datetime_utc '2024-11-23 14:25:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 6O5Y # _exptl.entry_id 6O5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O5Y _cell.length_a 65.147 _cell.length_b 195.897 _cell.length_c 236.976 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,K 1 1 B,G,H,L 2 1 C,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 430 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 457 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.659 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6O5Y _atom_sites.fract_transf_matrix[1][1] 0.01535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 601 HEM HEM . F 3 KUV A 1 602 1 KUV LIG . G 2 HEM B 1 601 601 HEM HEM . H 4 NO3 B 1 602 1 NO3 NO3 . I 2 HEM C 1 601 601 HEM HEM . J 2 HEM D 1 601 601 HEM HEM . K 5 HOH A 1 701 8 HOH HOH . K 5 HOH A 2 702 3 HOH HOH . K 5 HOH A 3 703 2 HOH HOH . K 5 HOH A 4 704 9 HOH HOH . K 5 HOH A 5 705 7 HOH HOH . K 5 HOH A 6 706 1 HOH HOH . L 5 HOH B 1 701 10 HOH HOH . L 5 HOH B 2 702 5 HOH HOH . L 5 HOH B 3 703 4 HOH HOH . L 5 HOH B 4 704 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 2 45.3 -36.683 -10.113 1 82.88 ? CHA HEM 601 D 1 HETATM 2 C CHB HEM . . . J 2 41.742 -35.334 -7.146 1 80.82 ? CHB HEM 601 D 1 HETATM 3 C CHC HEM . . . J 2 45.048 -33.657 -4.006 1 80.59 ? CHC HEM 601 D 1 HETATM 4 C CHD HEM . . . J 2 48.61 -35.125 -6.927 1 82.93 ? CHD HEM 601 D 1 HETATM 5 C C1A HEM . . . J 2 44.051 -36.421 -9.606 1 82.26 ? C1A HEM 601 D 1 HETATM 6 C C2A HEM . . . J 2 42.798 -36.656 -10.29 1 82.52 ? C2A HEM 601 D 1 HETATM 7 C C3A HEM . . . J 2 41.811 -36.274 -9.473 1 81.69 ? C3A HEM 601 D 1 HETATM 8 C C4A HEM . . . J 2 42.412 -35.804 -8.244 1 81.19 ? C4A HEM 601 D 1 HETATM 9 C CMA HEM . . . J 2 40.293 -36.322 -9.747 1 81.87 ? CMA HEM 601 D 1 HETATM 10 C CAA HEM . . . J 2 42.685 -37.215 -11.726 1 84.61 ? CAA HEM 601 D 1 HETATM 11 C CBA HEM . . . J 2 41.704 -38.375 -11.848 1 85.98 ? CBA HEM 601 D 1 HETATM 12 C CGA HEM . . . J 2 41.793 -38.866 -13.273 1 87.87 ? CGA HEM 601 D 1 HETATM 13 O O1A HEM . . . J 2 41.259 -39.963 -13.58 1 89.34 ? O1A HEM 601 D 1 HETATM 14 O O2A HEM . . . J 2 42.412 -38.15 -14.103 1 88.24 ? O2A HEM 601 D 1 HETATM 15 C C1B HEM . . . J 2 42.33 -34.724 -6.064 1 80.82 ? C1B HEM 601 D 1 HETATM 16 C C2B HEM . . . J 2 41.628 -34.047 -5.004 1 80.56 ? C2B HEM 601 D 1 HETATM 17 C C3B HEM . . . J 2 42.538 -33.572 -4.14 1 80.32 ? C3B HEM 601 D 1 HETATM 18 C C4B HEM . . . J 2 43.849 -33.951 -4.621 1 80.68 ? C4B HEM 601 D 1 HETATM 19 C CMB HEM . . . J 2 40.09 -33.917 -4.955 1 80.8 ? CMB HEM 601 D 1 HETATM 20 C CAB HEM . . . J 2 42.304 -32.789 -2.828 1 79.95 ? CAB HEM 601 D 1 HETATM 21 C CBB HEM . . . J 2 41.102 -32.752 -2.248 1 79.63 ? CBB HEM 601 D 1 HETATM 22 C C1C HEM . . . J 2 46.302 -33.968 -4.483 1 82.04 ? C1C HEM 601 D 1 HETATM 23 C C2C HEM . . . J 2 47.55 -33.841 -3.762 1 82.77 ? C2C HEM 601 D 1 HETATM 24 C C3C HEM . . . J 2 48.544 -34.251 -4.566 1 83.6 ? C3C HEM 601 D 1 HETATM 25 C C4C HEM . . . J 2 47.946 -34.645 -5.825 1 82.79 ? C4C HEM 601 D 1 HETATM 26 C CMC HEM . . . J 2 47.651 -33.321 -2.311 1 83.94 ? CMC HEM 601 D 1 HETATM 27 C CAC HEM . . . J 2 50.069 -34.312 -4.295 1 86.67 ? CAC HEM 601 D 1 HETATM 28 C CBC HEM . . . J 2 50.62 -33.794 -3.192 1 87.61 ? CBC HEM 601 D 1 HETATM 29 C C1D HEM . . . J 2 48.012 -35.598 -8.071 1 82.64 ? C1D HEM 601 D 1 HETATM 30 C C2D HEM . . . J 2 48.698 -35.906 -9.302 1 83.8 ? C2D HEM 601 D 1 HETATM 31 C C3D HEM . . . J 2 47.796 -36.344 -10.189 1 84.45 ? C3D HEM 601 D 1 HETATM 32 C C4D HEM . . . J 2 46.497 -36.317 -9.546 1 82.83 ? C4D HEM 601 D 1 HETATM 33 C CMD HEM . . . J 2 50.218 -35.751 -9.512 1 85.69 ? CMD HEM 601 D 1 HETATM 34 C CAD HEM . . . J 2 48.101 -36.779 -11.642 1 87.2 ? CAD HEM 601 D 1 HETATM 35 C CBD HEM . . . J 2 47.264 -37.986 -12.052 1 88.16 ? CBD HEM 601 D 1 HETATM 36 C CGD HEM . . . J 2 47.951 -38.697 -13.186 1 92.32 ? CGD HEM 601 D 1 HETATM 37 O O1D HEM . . . J 2 47.519 -39.826 -13.526 1 93.51 ? O1D HEM 601 D 1 HETATM 38 O O2D HEM . . . J 2 48.933 -38.143 -13.744 1 93.58 ? O2D HEM 601 D 1 HETATM 39 N NA HEM . . . J 2 43.782 -35.906 -8.356 1 81.13 ? NA HEM 601 D 1 HETATM 40 N NB HEM . . . J 2 43.684 -34.649 -5.803 1 80.84 ? NB HEM 601 D 1 HETATM 41 N NC HEM . . . J 2 46.583 -34.463 -5.74 1 82.33 ? NC HEM 601 D 1 HETATM 42 N ND HEM . . . J 2 46.668 -35.859 -8.253 1 82.25 ? ND HEM 601 D 1 HETATM 43 FE FE HEM . . . J 2 45.179 -35.235 -7.045 1 80.6 ? FE HEM 601 D 1 HETATM 44 H HHB HEM . . . J 2 40.768 -35.44 -7.13 1 98.25 ? HHB HEM 601 D 1 HETATM 45 H HHC HEM . . . J 2 45.003 -33.183 -3.149 1 97.97 ? HHC HEM 601 D 1 HETATM 46 H HHD HEM . . . J 2 49.59 -35.131 -6.896 1 100.78 ? HHD HEM 601 D 1 HETATM 47 H HMA HEM . . . J 2 40.101 -35.883 -10.602 1 99.51 ? HMA HEM 601 D 1 HETATM 48 H HMAA HEM . . . J 2 39.816 -35.858 -9.027 1 99.51 ? HMAA HEM 601 D 1 HETATM 49 H HMAB HEM . . . J 2 39.997 -37.255 -9.786 1 99.51 ? HMAB HEM 601 D 1 HETATM 50 H HAA HEM . . . J 2 43.562 -37.523 -12.005 1 102.8 ? HAA HEM 601 D 1 HETATM 51 H HAAA HEM . . . J 2 42.391 -36.501 -12.312 1 102.8 ? HAAA HEM 601 D 1 HETATM 52 H HBA HEM . . . J 2 40.803 -38.074 -11.654 1 104.45 ? HBA HEM 601 D 1 HETATM 53 H HBAA HEM . . . J 2 41.948 -39.086 -11.234 1 104.45 ? HBAA HEM 601 D 1 HETATM 54 H HMB HEM . . . J 2 39.729 -34.005 -5.851 1 98.23 ? HMB HEM 601 D 1 HETATM 55 H HMBA HEM . . . J 2 39.849 -33.049 -4.594 1 98.23 ? HMBA HEM 601 D 1 HETATM 56 H HMBB HEM . . . J 2 39.724 -34.614 -4.389 1 98.23 ? HMBB HEM 601 D 1 HETATM 57 H HAB HEM . . . J 2 43.037 -32.32 -2.423 1 97.2 ? HAB HEM 601 D 1 HETATM 58 H HBB HEM . . . J 2 40.976 -32.254 -1.424 1 96.82 ? HBB HEM 601 D 1 HETATM 59 H HBBA HEM . . . J 2 40.355 -33.222 -2.649 1 96.82 ? HBBA HEM 601 D 1 HETATM 60 H HMC HEM . . . J 2 48.337 -33.816 -1.836 1 101.99 ? HMC HEM 601 D 1 HETATM 61 H HMCA HEM . . . J 2 46.798 -33.442 -1.864 1 101.99 ? HMCA HEM 601 D 1 HETATM 62 H HMCB HEM . . . J 2 47.88 -32.379 -2.319 1 101.99 ? HMCB HEM 601 D 1 HETATM 63 H HAC HEM . . . J 2 50.638 -34.736 -4.941 1 105.27 ? HAC HEM 601 D 1 HETATM 64 H HBC HEM . . . J 2 51.579 -33.852 -3.057 1 106.4 ? HBC HEM 601 D 1 HETATM 65 H HBCA HEM . . . J 2 50.062 -33.361 -2.528 1 106.4 ? HBCA HEM 601 D 1 HETATM 66 H HMD HEM . . . J 2 50.451 -36.016 -10.427 1 104.1 ? HMD HEM 601 D 1 HETATM 67 H HMDA HEM . . . J 2 50.696 -36.324 -8.876 1 104.1 ? HMDA HEM 601 D 1 HETATM 68 H HMDB HEM . . . J 2 50.475 -34.817 -9.368 1 104.1 ? HMDB HEM 601 D 1 HETATM 69 H HAD HEM . . . J 2 49.041 -37.009 -11.711 1 105.9 ? HAD HEM 601 D 1 HETATM 70 H HADA HEM . . . J 2 47.903 -36.041 -12.239 1 105.9 ? HADA HEM 601 D 1 HETATM 71 H HBD HEM . . . J 2 46.386 -37.69 -12.339 1 107.06 ? HBD HEM 601 D 1 HETATM 72 H HBDA HEM . . . J 2 47.173 -38.59 -11.298 1 107.06 ? HBDA HEM 601 D 1 HETATM 73 H HHA HEM . . . J 2 45.342 -37.177 -10.958 1 100.72 ? HHA HEM 601 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 73 #