data_6O66 # _model_server_result.job_id 7ekYx0AAXLDMoIXncAWdsw _model_server_result.datetime_utc '2024-11-15 09:44:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":606}' # _entry.id 6O66 # _exptl.entry_id 6O66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O66 _cell.length_a 124.375 _cell.length_b 124.375 _cell.length_c 129.304 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_674 -x+y+1,-x+2,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 215.423819 -43.101333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C GLU 205 A GLU 202 1_555 A N SVX 206 A SVX 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C SVX 206 A SVX 203 1_555 A N ALA 207 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C GLU 205 B GLU 202 1_555 B N SVX 206 B SVX 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C SVX 206 B SVX 203 1_555 B N ALA 207 B ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6O66 _atom_sites.fract_transf_matrix[1][1] 0.00804 _atom_sites.fract_transf_matrix[1][2] 0.004642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LND A 1 601 2 LND DRG . D 3 GOL A 1 602 662 GOL GOL . E 3 GOL A 1 603 663 GOL GOL . F 3 GOL A 1 604 667 GOL GOL . G 3 GOL A 1 605 668 GOL GOL . H 3 GOL A 1 606 671 GOL GOL . I 2 LND B 1 601 3 LND DRG . J 3 GOL B 1 602 664 GOL GOL . K 3 GOL B 1 603 665 GOL GOL . L 3 GOL B 1 604 669 GOL GOL . M 3 GOL B 1 605 670 GOL GOL . N 3 GOL B 1 606 672 GOL GOL . O 4 HOH A 1 701 182 HOH HOH . O 4 HOH A 2 702 131 HOH HOH . O 4 HOH A 3 703 191 HOH HOH . O 4 HOH A 4 704 4 HOH HOH . O 4 HOH A 5 705 2 HOH HOH . O 4 HOH A 6 706 215 HOH HOH . O 4 HOH A 7 707 161 HOH HOH . O 4 HOH A 8 708 8 HOH HOH . O 4 HOH A 9 709 63 HOH HOH . O 4 HOH A 10 710 77 HOH HOH . O 4 HOH A 11 711 17 HOH HOH . O 4 HOH A 12 712 109 HOH HOH . O 4 HOH A 13 713 19 HOH HOH . O 4 HOH A 14 714 143 HOH HOH . O 4 HOH A 15 715 118 HOH HOH . O 4 HOH A 16 716 38 HOH HOH . O 4 HOH A 17 717 124 HOH HOH . O 4 HOH A 18 718 52 HOH HOH . O 4 HOH A 19 719 12 HOH HOH . O 4 HOH A 20 720 61 HOH HOH . O 4 HOH A 21 721 117 HOH HOH . O 4 HOH A 22 722 81 HOH HOH . O 4 HOH A 23 723 125 HOH HOH . O 4 HOH A 24 724 164 HOH HOH . O 4 HOH A 25 725 71 HOH HOH . O 4 HOH A 26 726 96 HOH HOH . O 4 HOH A 27 727 179 HOH HOH . O 4 HOH A 28 728 220 HOH HOH . O 4 HOH A 29 729 203 HOH HOH . O 4 HOH A 30 730 89 HOH HOH . O 4 HOH A 31 731 29 HOH HOH . O 4 HOH A 32 732 122 HOH HOH . O 4 HOH A 33 733 36 HOH HOH . O 4 HOH A 34 734 33 HOH HOH . O 4 HOH A 35 735 150 HOH HOH . O 4 HOH A 36 736 82 HOH HOH . O 4 HOH A 37 737 5 HOH HOH . O 4 HOH A 38 738 60 HOH HOH . O 4 HOH A 39 739 154 HOH HOH . O 4 HOH A 40 740 6 HOH HOH . O 4 HOH A 41 741 92 HOH HOH . O 4 HOH A 42 742 165 HOH HOH . O 4 HOH A 43 743 22 HOH HOH . O 4 HOH A 44 744 216 HOH HOH . O 4 HOH A 45 745 93 HOH HOH . O 4 HOH A 46 746 78 HOH HOH . O 4 HOH A 47 747 157 HOH HOH . O 4 HOH A 48 748 163 HOH HOH . O 4 HOH A 49 749 51 HOH HOH . O 4 HOH A 50 750 116 HOH HOH . O 4 HOH A 51 751 59 HOH HOH . O 4 HOH A 52 752 202 HOH HOH . O 4 HOH A 53 753 153 HOH HOH . O 4 HOH A 54 754 211 HOH HOH . O 4 HOH A 55 755 44 HOH HOH . O 4 HOH A 56 756 16 HOH HOH . O 4 HOH A 57 757 176 HOH HOH . O 4 HOH A 58 758 95 HOH HOH . O 4 HOH A 59 759 75 HOH HOH . O 4 HOH A 60 760 145 HOH HOH . O 4 HOH A 61 761 225 HOH HOH . O 4 HOH A 62 762 42 HOH HOH . O 4 HOH A 63 763 160 HOH HOH . O 4 HOH A 64 764 141 HOH HOH . O 4 HOH A 65 765 205 HOH HOH . O 4 HOH A 66 766 188 HOH HOH . O 4 HOH A 67 767 18 HOH HOH . O 4 HOH A 68 768 134 HOH HOH . O 4 HOH A 69 769 190 HOH HOH . O 4 HOH A 70 770 115 HOH HOH . O 4 HOH A 71 771 74 HOH HOH . O 4 HOH A 72 772 70 HOH HOH . O 4 HOH A 73 773 72 HOH HOH . O 4 HOH A 74 774 21 HOH HOH . O 4 HOH A 75 775 9 HOH HOH . O 4 HOH A 76 776 98 HOH HOH . O 4 HOH A 77 777 175 HOH HOH . O 4 HOH A 78 778 231 HOH HOH . O 4 HOH A 79 779 133 HOH HOH . O 4 HOH A 80 780 152 HOH HOH . O 4 HOH A 81 781 128 HOH HOH . O 4 HOH A 82 782 200 HOH HOH . O 4 HOH A 83 783 45 HOH HOH . O 4 HOH A 84 784 180 HOH HOH . O 4 HOH A 85 785 219 HOH HOH . O 4 HOH A 86 786 79 HOH HOH . O 4 HOH A 87 787 172 HOH HOH . O 4 HOH A 88 788 31 HOH HOH . O 4 HOH A 89 789 106 HOH HOH . O 4 HOH A 90 790 47 HOH HOH . O 4 HOH A 91 791 239 HOH HOH . O 4 HOH A 92 792 136 HOH HOH . O 4 HOH A 93 793 88 HOH HOH . O 4 HOH A 94 794 146 HOH HOH . O 4 HOH A 95 795 108 HOH HOH . O 4 HOH A 96 796 158 HOH HOH . O 4 HOH A 97 797 68 HOH HOH . O 4 HOH A 98 798 170 HOH HOH . O 4 HOH A 99 799 48 HOH HOH . O 4 HOH A 100 800 43 HOH HOH . O 4 HOH A 101 801 40 HOH HOH . O 4 HOH A 102 802 192 HOH HOH . O 4 HOH A 103 803 181 HOH HOH . O 4 HOH A 104 804 27 HOH HOH . O 4 HOH A 105 805 223 HOH HOH . O 4 HOH A 106 806 121 HOH HOH . O 4 HOH A 107 807 236 HOH HOH . O 4 HOH A 108 808 208 HOH HOH . O 4 HOH A 109 809 234 HOH HOH . O 4 HOH A 110 810 76 HOH HOH . O 4 HOH A 111 811 233 HOH HOH . O 4 HOH A 112 812 168 HOH HOH . O 4 HOH A 113 813 241 HOH HOH . O 4 HOH A 114 814 237 HOH HOH . P 4 HOH B 1 701 94 HOH HOH . P 4 HOH B 2 702 156 HOH HOH . P 4 HOH B 3 703 103 HOH HOH . P 4 HOH B 4 704 230 HOH HOH . P 4 HOH B 5 705 56 HOH HOH . P 4 HOH B 6 706 194 HOH HOH . P 4 HOH B 7 707 102 HOH HOH . P 4 HOH B 8 708 26 HOH HOH . P 4 HOH B 9 709 127 HOH HOH . P 4 HOH B 10 710 39 HOH HOH . P 4 HOH B 11 711 218 HOH HOH . P 4 HOH B 12 712 11 HOH HOH . P 4 HOH B 13 713 97 HOH HOH . P 4 HOH B 14 714 24 HOH HOH . P 4 HOH B 15 715 177 HOH HOH . P 4 HOH B 16 716 187 HOH HOH . P 4 HOH B 17 717 224 HOH HOH . P 4 HOH B 18 718 166 HOH HOH . P 4 HOH B 19 719 169 HOH HOH . P 4 HOH B 20 720 155 HOH HOH . P 4 HOH B 21 721 196 HOH HOH . P 4 HOH B 22 722 135 HOH HOH . P 4 HOH B 23 723 10 HOH HOH . P 4 HOH B 24 724 35 HOH HOH . P 4 HOH B 25 725 20 HOH HOH . P 4 HOH B 26 726 90 HOH HOH . P 4 HOH B 27 727 111 HOH HOH . P 4 HOH B 28 728 34 HOH HOH . P 4 HOH B 29 729 50 HOH HOH . P 4 HOH B 30 730 99 HOH HOH . P 4 HOH B 31 731 185 HOH HOH . P 4 HOH B 32 732 183 HOH HOH . P 4 HOH B 33 733 210 HOH HOH . P 4 HOH B 34 734 7 HOH HOH . P 4 HOH B 35 735 73 HOH HOH . P 4 HOH B 36 736 130 HOH HOH . P 4 HOH B 37 737 184 HOH HOH . P 4 HOH B 38 738 137 HOH HOH . P 4 HOH B 39 739 67 HOH HOH . P 4 HOH B 40 740 120 HOH HOH . P 4 HOH B 41 741 140 HOH HOH . P 4 HOH B 42 742 30 HOH HOH . P 4 HOH B 43 743 15 HOH HOH . P 4 HOH B 44 744 113 HOH HOH . P 4 HOH B 45 745 23 HOH HOH . P 4 HOH B 46 746 101 HOH HOH . P 4 HOH B 47 747 58 HOH HOH . P 4 HOH B 48 748 110 HOH HOH . P 4 HOH B 49 749 207 HOH HOH . P 4 HOH B 50 750 84 HOH HOH . P 4 HOH B 51 751 189 HOH HOH . P 4 HOH B 52 752 32 HOH HOH . P 4 HOH B 53 753 28 HOH HOH . P 4 HOH B 54 754 174 HOH HOH . P 4 HOH B 55 755 1 HOH HOH . P 4 HOH B 56 756 83 HOH HOH . P 4 HOH B 57 757 37 HOH HOH . P 4 HOH B 58 758 53 HOH HOH . P 4 HOH B 59 759 201 HOH HOH . P 4 HOH B 60 760 69 HOH HOH . P 4 HOH B 61 761 25 HOH HOH . P 4 HOH B 62 762 55 HOH HOH . P 4 HOH B 63 763 85 HOH HOH . P 4 HOH B 64 764 91 HOH HOH . P 4 HOH B 65 765 3 HOH HOH . P 4 HOH B 66 766 204 HOH HOH . P 4 HOH B 67 767 199 HOH HOH . P 4 HOH B 68 768 65 HOH HOH . P 4 HOH B 69 769 126 HOH HOH . P 4 HOH B 70 770 132 HOH HOH . P 4 HOH B 71 771 114 HOH HOH . P 4 HOH B 72 772 167 HOH HOH . P 4 HOH B 73 773 197 HOH HOH . P 4 HOH B 74 774 147 HOH HOH . P 4 HOH B 75 775 148 HOH HOH . P 4 HOH B 76 776 214 HOH HOH . P 4 HOH B 77 777 232 HOH HOH . P 4 HOH B 78 778 227 HOH HOH . P 4 HOH B 79 779 171 HOH HOH . P 4 HOH B 80 780 64 HOH HOH . P 4 HOH B 81 781 240 HOH HOH . P 4 HOH B 82 782 123 HOH HOH . P 4 HOH B 83 783 105 HOH HOH . P 4 HOH B 84 784 193 HOH HOH . P 4 HOH B 85 785 49 HOH HOH . P 4 HOH B 86 786 104 HOH HOH . P 4 HOH B 87 787 142 HOH HOH . P 4 HOH B 88 788 195 HOH HOH . P 4 HOH B 89 789 151 HOH HOH . P 4 HOH B 90 790 62 HOH HOH . P 4 HOH B 91 791 186 HOH HOH . P 4 HOH B 92 792 198 HOH HOH . P 4 HOH B 93 793 173 HOH HOH . P 4 HOH B 94 794 14 HOH HOH . P 4 HOH B 95 795 66 HOH HOH . P 4 HOH B 96 796 206 HOH HOH . P 4 HOH B 97 797 46 HOH HOH . P 4 HOH B 98 798 144 HOH HOH . P 4 HOH B 99 799 139 HOH HOH . P 4 HOH B 100 800 87 HOH HOH . P 4 HOH B 101 801 159 HOH HOH . P 4 HOH B 102 802 57 HOH HOH . P 4 HOH B 103 803 119 HOH HOH . P 4 HOH B 104 804 178 HOH HOH . P 4 HOH B 105 805 149 HOH HOH . P 4 HOH B 106 806 80 HOH HOH . P 4 HOH B 107 807 162 HOH HOH . P 4 HOH B 108 808 235 HOH HOH . P 4 HOH B 109 809 209 HOH HOH . P 4 HOH B 110 810 228 HOH HOH . P 4 HOH B 111 811 86 HOH HOH . P 4 HOH B 112 812 238 HOH HOH . P 4 HOH B 113 813 221 HOH HOH . P 4 HOH B 114 814 226 HOH HOH . P 4 HOH B 115 815 217 HOH HOH . P 4 HOH B 116 816 229 HOH HOH . P 4 HOH B 117 817 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 3 38.189 137.329 14.191 1 53 ? C1 GOL 606 B 1 HETATM 2 O O1 GOL . . . N 3 37.685 137.249 15.506 1 63.12 ? O1 GOL 606 B 1 HETATM 3 C C2 GOL . . . N 3 37.635 138.576 13.513 1 58.66 ? C2 GOL 606 B 1 HETATM 4 O O2 GOL . . . N 3 36.4 138.917 14.101 1 64.72 ? O2 GOL 606 B 1 HETATM 5 C C3 GOL . . . N 3 37.429 138.302 12.027 1 56.38 ? C3 GOL 606 B 1 HETATM 6 O O3 GOL . . . N 3 36.421 137.331 11.855 1 62.88 ? O3 GOL 606 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 6 #