data_6O67
#
_model_server_result.job_id            G7_Pgttjcq3ipe9g0dHY1Q 
_model_server_result.datetime_utc      '2025-07-07 23:23:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    6O67 
#
_exptl.entry_id    6O67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              158.238 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.14 
_cell.angle_gamma         90 
_cell.entry_id            6O67 
_cell.length_a            92.93 
_cell.length_b            60.35 
_cell.length_c            118.11 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H18 O2' 
_chem_comp.formula_weight    158.238 
_chem_comp.id                KNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'nonanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C1 KNA doub 173 n n 
C1 C2 KNA sing 174 n n 
C1 O1 KNA sing 175 n n 
O1 HO1 KNA sing 176 n n 
C3 C2 KNA sing 177 n n 
C2 H2 KNA sing 178 n n 
C2 H2A KNA sing 179 n n 
C3 C4 KNA sing 180 n n 
C3 H3 KNA sing 181 n n 
C3 H3A KNA sing 182 n n 
C5 C4 KNA sing 183 n n 
C4 H4 KNA sing 184 n n 
C4 H4A KNA sing 185 n n 
C5 C6 KNA sing 186 n n 
C5 H5 KNA sing 187 n n 
C5 H5A KNA sing 188 n n 
C6 C7 KNA sing 189 n n 
C6 H6 KNA sing 190 n n 
C6 H6A KNA sing 191 n n 
C7 C8 KNA sing 192 n n 
C7 H7 KNA sing 193 n n 
C7 H7A KNA sing 194 n n 
C8 C9 KNA sing 195 n n 
C8 H8 KNA sing 196 n n 
C8 H8A KNA sing 197 n n 
C9 H9 KNA sing 198 n n 
C9 H9A KNA sing 199 n n 
C9 H9B KNA sing 200 n n 
#
_atom_sites.entry_id                     6O67 
_atom_sites.fract_transf_matrix[1][1]    0.010761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002512 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01657 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008694 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LO7 A 1 501 501 LO7 LIG . 
D 3 KNA A 1 502 503 KNA KNA . 
E 4 HOH A 1 601 97 HOH HOH . 
E 4 HOH A 2 602 150 HOH HOH . 
E 4 HOH A 3 603 99 HOH HOH . 
E 4 HOH A 4 604 143 HOH HOH . 
E 4 HOH A 5 605 48 HOH HOH . 
E 4 HOH A 6 606 126 HOH HOH . 
E 4 HOH A 7 607 122 HOH HOH . 
E 4 HOH A 8 608 102 HOH HOH . 
E 4 HOH A 9 609 146 HOH HOH . 
E 4 HOH A 10 610 115 HOH HOH . 
E 4 HOH A 11 611 103 HOH HOH . 
E 4 HOH A 12 612 21 HOH HOH . 
E 4 HOH A 13 613 66 HOH HOH . 
E 4 HOH A 14 614 138 HOH HOH . 
E 4 HOH A 15 615 85 HOH HOH . 
E 4 HOH A 16 616 3 HOH HOH . 
E 4 HOH A 17 617 80 HOH HOH . 
E 4 HOH A 18 618 36 HOH HOH . 
E 4 HOH A 19 619 60 HOH HOH . 
E 4 HOH A 20 620 1 HOH HOH . 
E 4 HOH A 21 621 76 HOH HOH . 
E 4 HOH A 22 622 149 HOH HOH . 
E 4 HOH A 23 623 68 HOH HOH . 
E 4 HOH A 24 624 136 HOH HOH . 
E 4 HOH A 25 625 46 HOH HOH . 
E 4 HOH A 26 626 119 HOH HOH . 
E 4 HOH A 27 627 56 HOH HOH . 
E 4 HOH A 28 628 28 HOH HOH . 
E 4 HOH A 29 629 24 HOH HOH . 
E 4 HOH A 30 630 27 HOH HOH . 
E 4 HOH A 31 631 6 HOH HOH . 
E 4 HOH A 32 632 53 HOH HOH . 
E 4 HOH A 33 633 9 HOH HOH . 
E 4 HOH A 34 634 156 HOH HOH . 
E 4 HOH A 35 635 5 HOH HOH . 
E 4 HOH A 36 636 38 HOH HOH . 
E 4 HOH A 37 637 144 HOH HOH . 
E 4 HOH A 38 638 22 HOH HOH . 
E 4 HOH A 39 639 77 HOH HOH . 
E 4 HOH A 40 640 154 HOH HOH . 
E 4 HOH A 41 641 35 HOH HOH . 
E 4 HOH A 42 642 155 HOH HOH . 
E 4 HOH A 43 643 16 HOH HOH . 
E 4 HOH A 44 644 118 HOH HOH . 
E 4 HOH A 45 645 23 HOH HOH . 
E 4 HOH A 46 646 45 HOH HOH . 
E 4 HOH A 47 647 73 HOH HOH . 
E 4 HOH A 48 648 57 HOH HOH . 
E 4 HOH A 49 649 62 HOH HOH . 
E 4 HOH A 50 650 29 HOH HOH . 
E 4 HOH A 51 651 71 HOH HOH . 
E 4 HOH A 52 652 63 HOH HOH . 
E 4 HOH A 53 653 8 HOH HOH . 
E 4 HOH A 54 654 52 HOH HOH . 
E 4 HOH A 55 655 18 HOH HOH . 
E 4 HOH A 56 656 58 HOH HOH . 
E 4 HOH A 57 657 69 HOH HOH . 
E 4 HOH A 58 658 26 HOH HOH . 
E 4 HOH A 59 659 112 HOH HOH . 
E 4 HOH A 60 660 42 HOH HOH . 
E 4 HOH A 61 661 82 HOH HOH . 
E 4 HOH A 62 662 15 HOH HOH . 
E 4 HOH A 63 663 43 HOH HOH . 
E 4 HOH A 64 664 30 HOH HOH . 
E 4 HOH A 65 665 33 HOH HOH . 
E 4 HOH A 66 666 106 HOH HOH . 
E 4 HOH A 67 667 128 HOH HOH . 
E 4 HOH A 68 668 145 HOH HOH . 
E 4 HOH A 69 669 41 HOH HOH . 
E 4 HOH A 70 670 111 HOH HOH . 
E 4 HOH A 71 671 72 HOH HOH . 
E 4 HOH A 72 672 139 HOH HOH . 
E 4 HOH A 73 673 133 HOH HOH . 
E 4 HOH A 74 674 116 HOH HOH . 
E 4 HOH A 75 675 70 HOH HOH . 
E 4 HOH A 76 676 79 HOH HOH . 
E 4 HOH A 77 677 39 HOH HOH . 
E 4 HOH A 78 678 123 HOH HOH . 
E 4 HOH A 79 679 114 HOH HOH . 
E 4 HOH A 80 680 160 HOH HOH . 
E 4 HOH A 81 681 101 HOH HOH . 
E 4 HOH A 82 682 163 HOH HOH . 
E 4 HOH A 83 683 107 HOH HOH . 
E 4 HOH A 84 684 159 HOH HOH . 
E 4 HOH A 85 685 78 HOH HOH . 
E 4 HOH A 86 686 125 HOH HOH . 
E 4 HOH A 87 687 140 HOH HOH . 
E 4 HOH A 88 688 110 HOH HOH . 
E 4 HOH A 89 689 148 HOH HOH . 
E 4 HOH A 90 690 131 HOH HOH . 
E 4 HOH A 91 691 81 HOH HOH . 
E 4 HOH A 92 692 20 HOH HOH . 
E 4 HOH A 93 693 105 HOH HOH . 
E 4 HOH A 94 694 142 HOH HOH . 
E 4 HOH A 95 695 67 HOH HOH . 
F 4 HOH B 1 501 49 HOH HOH . 
F 4 HOH B 2 502 61 HOH HOH . 
F 4 HOH B 3 503 129 HOH HOH . 
F 4 HOH B 4 504 2 HOH HOH . 
F 4 HOH B 5 505 17 HOH HOH . 
F 4 HOH B 6 506 65 HOH HOH . 
F 4 HOH B 7 507 31 HOH HOH . 
F 4 HOH B 8 508 121 HOH HOH . 
F 4 HOH B 9 509 13 HOH HOH . 
F 4 HOH B 10 510 75 HOH HOH . 
F 4 HOH B 11 511 14 HOH HOH . 
F 4 HOH B 12 512 11 HOH HOH . 
F 4 HOH B 13 513 12 HOH HOH . 
F 4 HOH B 14 514 4 HOH HOH . 
F 4 HOH B 15 515 55 HOH HOH . 
F 4 HOH B 16 516 50 HOH HOH . 
F 4 HOH B 17 517 84 HOH HOH . 
F 4 HOH B 18 518 94 HOH HOH . 
F 4 HOH B 19 519 37 HOH HOH . 
F 4 HOH B 20 520 44 HOH HOH . 
F 4 HOH B 21 521 91 HOH HOH . 
F 4 HOH B 22 522 19 HOH HOH . 
F 4 HOH B 23 523 32 HOH HOH . 
F 4 HOH B 24 524 59 HOH HOH . 
F 4 HOH B 25 525 83 HOH HOH . 
F 4 HOH B 26 526 158 HOH HOH . 
F 4 HOH B 27 527 89 HOH HOH . 
F 4 HOH B 28 528 10 HOH HOH . 
F 4 HOH B 29 529 87 HOH HOH . 
F 4 HOH B 30 530 152 HOH HOH . 
F 4 HOH B 31 531 95 HOH HOH . 
F 4 HOH B 32 532 100 HOH HOH . 
F 4 HOH B 33 533 25 HOH HOH . 
F 4 HOH B 34 534 64 HOH HOH . 
F 4 HOH B 35 535 96 HOH HOH . 
F 4 HOH B 36 536 134 HOH HOH . 
F 4 HOH B 37 537 93 HOH HOH . 
F 4 HOH B 38 538 88 HOH HOH . 
F 4 HOH B 39 539 113 HOH HOH . 
F 4 HOH B 40 540 153 HOH HOH . 
F 4 HOH B 41 541 90 HOH HOH . 
F 4 HOH B 42 542 157 HOH HOH . 
F 4 HOH B 43 543 47 HOH HOH . 
F 4 HOH B 44 544 40 HOH HOH . 
F 4 HOH B 45 545 162 HOH HOH . 
F 4 HOH B 46 546 92 HOH HOH . 
F 4 HOH B 47 547 34 HOH HOH . 
F 4 HOH B 48 548 51 HOH HOH . 
F 4 HOH B 49 549 54 HOH HOH . 
F 4 HOH B 50 550 137 HOH HOH . 
F 4 HOH B 51 551 124 HOH HOH . 
F 4 HOH B 52 552 108 HOH HOH . 
F 4 HOH B 53 553 7 HOH HOH . 
F 4 HOH B 54 554 117 HOH HOH . 
F 4 HOH B 55 555 98 HOH HOH . 
F 4 HOH B 56 556 127 HOH HOH . 
F 4 HOH B 57 557 151 HOH HOH . 
F 4 HOH B 58 558 74 HOH HOH . 
F 4 HOH B 59 559 132 HOH HOH . 
F 4 HOH B 60 560 135 HOH HOH . 
F 4 HOH B 61 561 109 HOH HOH . 
F 4 HOH B 62 562 86 HOH HOH . 
F 4 HOH B 63 563 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KNA . . . D 3 11.239 72.267 9.355 1 72.1 ? C1 KNA 502 A 1 
HETATM 2 O O1 KNA . . . D 3 11.48 72.424 10.569 1 60.79 ? O1 KNA 502 A 1 
HETATM 3 C C2 KNA . . . D 3 12.162 72.931 8.349 1 72.98 ? C2 KNA 502 A 1 
HETATM 4 O O2 KNA . . . D 3 10.281 71.595 8.924 1 76.05 ? O2 KNA 502 A 1 
HETATM 5 C C3 KNA . . . D 3 11.73 72.796 6.922 1 74.06 ? C3 KNA 502 A 1 
HETATM 6 C C4 KNA . . . D 3 12.694 71.96 6.097 1 68.01 ? C4 KNA 502 A 1 
HETATM 7 C C5 KNA . . . D 3 14.064 72.572 5.937 1 71.46 ? C5 KNA 502 A 1 
HETATM 8 C C6 KNA . . . D 3 14.979 71.808 5.012 1 67.9 ? C6 KNA 502 A 1 
HETATM 9 C C7 KNA . . . D 3 14.261 70.988 3.969 1 67.93 ? C7 KNA 502 A 1 
HETATM 10 C C8 KNA . . . D 3 14.945 69.692 3.617 1 66.21 ? C8 KNA 502 A 1 
HETATM 11 C C9 KNA . . . D 3 14.498 68.521 4.458 1 62.26 ? C9 KNA 502 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#