data_6O6Y # _model_server_result.job_id MwCJPYlgaFoNWpcstN-Vpg _model_server_result.datetime_utc '2024-11-15 11:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6O6Y # _exptl.entry_id 6O6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',3'- cyclic AMP" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O6Y _cell.length_a 103.451 _cell.length_b 163.963 _cell.length_c 111.105 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id ACK _chem_comp.mon_nstd_flag . _chem_comp.name "2',3'- cyclic AMP" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5' C4' ACK sing 1 n n C5' O5' ACK sing 2 n n C4' O4' ACK sing 3 n n C4' C3' ACK sing 4 n n O4' C1' ACK sing 5 n n C3' O3' ACK sing 6 n n C3' C2' ACK sing 7 n n O3' P ACK sing 8 n n C1' N9 ACK sing 9 n n C1' C2' ACK sing 10 n n C8 N9 ACK sing 11 n y C8 N7 ACK doub 12 n y N9 C4 ACK sing 13 n y C2' O2' ACK sing 14 n n O1P P ACK doub 15 n n P O2' ACK sing 16 n n P O3P ACK sing 17 n n N7 C5 ACK sing 18 n y C4 N3 ACK doub 19 n y C4 C5 ACK sing 20 n y N3 C2 ACK sing 21 n y C5 C6 ACK doub 22 n y C2 N1 ACK doub 23 n y C6 N1 ACK sing 24 n y C6 N6 ACK sing 25 n n O3P H1 ACK sing 26 n n C3' H2 ACK sing 27 n n C4' H3 ACK sing 28 n n C5' H4 ACK sing 29 n n C5' H5 ACK sing 30 n n O5' H6 ACK sing 31 n n C1' H7 ACK sing 32 n n C8 H8 ACK sing 33 n n N6 H9 ACK sing 34 n n N6 H10 ACK sing 35 n n C2 H11 ACK sing 36 n n C2' H12 ACK sing 37 n n # _atom_sites.entry_id 6O6Y _atom_sites.fract_transf_matrix[1][1] 0.009666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACK A 1 501 14 ACK A1P . D 3 LQJ A 1 502 2 LQJ A2P . E 2 ACK B 1 501 15 ACK A1P . F 3 LQJ B 1 502 1 LQJ A2P . G 4 HOH A 1 601 19 HOH HOH . G 4 HOH A 2 602 115 HOH HOH . G 4 HOH A 3 603 128 HOH HOH . G 4 HOH A 4 604 120 HOH HOH . G 4 HOH A 5 605 66 HOH HOH . G 4 HOH A 6 606 101 HOH HOH . G 4 HOH A 7 607 112 HOH HOH . G 4 HOH A 8 608 109 HOH HOH . G 4 HOH A 9 609 106 HOH HOH . G 4 HOH A 10 610 38 HOH HOH . G 4 HOH A 11 611 105 HOH HOH . G 4 HOH A 12 612 39 HOH HOH . G 4 HOH A 13 613 25 HOH HOH . G 4 HOH A 14 614 90 HOH HOH . G 4 HOH A 15 615 34 HOH HOH . G 4 HOH A 16 616 30 HOH HOH . G 4 HOH A 17 617 113 HOH HOH . G 4 HOH A 18 618 15 HOH HOH . G 4 HOH A 19 619 121 HOH HOH . G 4 HOH A 20 620 1 HOH HOH . G 4 HOH A 21 621 37 HOH HOH . G 4 HOH A 22 622 74 HOH HOH . G 4 HOH A 23 623 36 HOH HOH . G 4 HOH A 24 624 119 HOH HOH . G 4 HOH A 25 625 103 HOH HOH . G 4 HOH A 26 626 70 HOH HOH . G 4 HOH A 27 627 55 HOH HOH . G 4 HOH A 28 628 41 HOH HOH . G 4 HOH A 29 629 33 HOH HOH . G 4 HOH A 30 630 89 HOH HOH . G 4 HOH A 31 631 40 HOH HOH . G 4 HOH A 32 632 108 HOH HOH . G 4 HOH A 33 633 116 HOH HOH . G 4 HOH A 34 634 26 HOH HOH . G 4 HOH A 35 635 88 HOH HOH . G 4 HOH A 36 636 20 HOH HOH . G 4 HOH A 37 637 93 HOH HOH . G 4 HOH A 38 638 49 HOH HOH . G 4 HOH A 39 639 111 HOH HOH . G 4 HOH A 40 640 65 HOH HOH . G 4 HOH A 41 641 50 HOH HOH . G 4 HOH A 42 642 46 HOH HOH . G 4 HOH A 43 643 69 HOH HOH . G 4 HOH A 44 644 22 HOH HOH . G 4 HOH A 45 645 14 HOH HOH . G 4 HOH A 46 646 42 HOH HOH . G 4 HOH A 47 647 53 HOH HOH . G 4 HOH A 48 648 117 HOH HOH . G 4 HOH A 49 649 12 HOH HOH . G 4 HOH A 50 650 84 HOH HOH . G 4 HOH A 51 651 48 HOH HOH . G 4 HOH A 52 652 104 HOH HOH . G 4 HOH A 53 653 28 HOH HOH . G 4 HOH A 54 654 8 HOH HOH . G 4 HOH A 55 655 57 HOH HOH . G 4 HOH A 56 656 9 HOH HOH . G 4 HOH A 57 657 62 HOH HOH . G 4 HOH A 58 658 54 HOH HOH . G 4 HOH A 59 659 6 HOH HOH . G 4 HOH A 60 660 110 HOH HOH . G 4 HOH A 61 661 122 HOH HOH . G 4 HOH A 62 662 51 HOH HOH . G 4 HOH A 63 663 99 HOH HOH . G 4 HOH A 64 664 127 HOH HOH . G 4 HOH A 65 665 44 HOH HOH . H 4 HOH B 1 601 102 HOH HOH . H 4 HOH B 2 602 76 HOH HOH . H 4 HOH B 3 603 125 HOH HOH . H 4 HOH B 4 604 27 HOH HOH . H 4 HOH B 5 605 29 HOH HOH . H 4 HOH B 6 606 97 HOH HOH . H 4 HOH B 7 607 92 HOH HOH . H 4 HOH B 8 608 114 HOH HOH . H 4 HOH B 9 609 118 HOH HOH . H 4 HOH B 10 610 5 HOH HOH . H 4 HOH B 11 611 68 HOH HOH . H 4 HOH B 12 612 82 HOH HOH . H 4 HOH B 13 613 13 HOH HOH . H 4 HOH B 14 614 21 HOH HOH . H 4 HOH B 15 615 3 HOH HOH . H 4 HOH B 16 616 86 HOH HOH . H 4 HOH B 17 617 10 HOH HOH . H 4 HOH B 18 618 4 HOH HOH . H 4 HOH B 19 619 73 HOH HOH . H 4 HOH B 20 620 81 HOH HOH . H 4 HOH B 21 621 23 HOH HOH . H 4 HOH B 22 622 35 HOH HOH . H 4 HOH B 23 623 32 HOH HOH . H 4 HOH B 24 624 58 HOH HOH . H 4 HOH B 25 625 47 HOH HOH . H 4 HOH B 26 626 124 HOH HOH . H 4 HOH B 27 627 7 HOH HOH . H 4 HOH B 28 628 64 HOH HOH . H 4 HOH B 29 629 18 HOH HOH . H 4 HOH B 30 630 17 HOH HOH . H 4 HOH B 31 631 45 HOH HOH . H 4 HOH B 32 632 59 HOH HOH . H 4 HOH B 33 633 75 HOH HOH . H 4 HOH B 34 634 2 HOH HOH . H 4 HOH B 35 635 31 HOH HOH . H 4 HOH B 36 636 67 HOH HOH . H 4 HOH B 37 637 83 HOH HOH . H 4 HOH B 38 638 107 HOH HOH . H 4 HOH B 39 639 71 HOH HOH . H 4 HOH B 40 640 61 HOH HOH . H 4 HOH B 41 641 85 HOH HOH . H 4 HOH B 42 642 126 HOH HOH . H 4 HOH B 43 643 72 HOH HOH . H 4 HOH B 44 644 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P ACK . . . E 2 -14.985 73.115 -3.96 1 57.88 -1 O3P ACK 501 B 1 HETATM 2 P P ACK . . . E 2 -15.864 73.476 -5.153 1 58.77 ? P ACK 501 B 1 HETATM 3 O O1P ACK . . . E 2 -16.614 74.78 -5.224 1 57.96 ? O1P ACK 501 B 1 HETATM 4 O O2' ACK . . . E 2 -15.022 73.285 -6.515 1 54.81 ? O2' ACK 501 B 1 HETATM 5 O O3' ACK . . . E 2 -16.905 72.266 -5.452 1 55.57 ? O3' ACK 501 B 1 HETATM 6 C C3' ACK . . . E 2 -16.752 71.675 -6.742 1 51.09 ? C3' ACK 501 B 1 HETATM 7 C C4' ACK . . . E 2 -16.674 70.16 -6.7 1 50.92 ? C4' ACK 501 B 1 HETATM 8 O O4' ACK . . . E 2 -15.309 69.785 -7.007 1 53.72 ? O4' ACK 501 B 1 HETATM 9 C C5' ACK . . . E 2 -17.627 69.52 -7.699 1 47.56 ? C5' ACK 501 B 1 HETATM 10 O O5' ACK . . . E 2 -17.369 70.1 -8.973 1 44.59 ? O5' ACK 501 B 1 HETATM 11 C C1' ACK . . . E 2 -14.476 70.941 -6.971 1 49.4 ? C1' ACK 501 B 1 HETATM 12 N N9 ACK . . . E 2 -13.432 70.891 -7.996 1 48.25 ? N9 ACK 501 B 1 HETATM 13 C C8 ACK . . . E 2 -13.572 70.412 -9.241 1 47.03 ? C8 ACK 501 B 1 HETATM 14 N N7 ACK . . . E 2 -12.409 70.535 -9.929 1 44.81 ? N7 ACK 501 B 1 HETATM 15 C C5 ACK . . . E 2 -11.525 71.12 -9.11 1 46.51 ? C5 ACK 501 B 1 HETATM 16 C C6 ACK . . . E 2 -10.115 71.537 -9.226 1 47.37 ? C6 ACK 501 B 1 HETATM 17 N N6 ACK . . . E 2 -9.469 71.328 -10.406 1 45.73 ? N6 ACK 501 B 1 HETATM 18 N N1 ACK . . . E 2 -9.543 72.108 -8.139 1 47.87 ? N1 ACK 501 B 1 HETATM 19 C C2 ACK . . . E 2 -10.224 72.31 -6.984 1 51.21 ? C2 ACK 501 B 1 HETATM 20 N N3 ACK . . . E 2 -11.518 71.945 -6.818 1 48.91 ? N3 ACK 501 B 1 HETATM 21 C C4 ACK . . . E 2 -12.198 71.361 -7.833 1 46.91 ? C4 ACK 501 B 1 HETATM 22 C C2' ACK . . . E 2 -15.393 72.118 -7.25 1 53.35 ? C2' ACK 501 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #