data_6O6Y # _model_server_result.job_id MndfCAyXdFU42-a-ZfhmhQ _model_server_result.datetime_utc '2024-11-15 11:50:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6O6Y # _exptl.entry_id 6O6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 658.412 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O6Y _cell.length_a 103.451 _cell.length_b 163.963 _cell.length_c 111.105 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C20 H24 N10 O12 P2' _chem_comp.formula_weight 658.412 _chem_comp.id LQJ _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C18 LQJ sing 231 n n N9 C18 LQJ doub 232 n y N9 C17 LQJ sing 233 n y C18 C15 LQJ sing 234 n y C17 N8 LQJ doub 235 n y C15 N7 LQJ sing 236 n y C15 C16 LQJ doub 237 n y N7 C14 LQJ doub 238 n y C16 N8 LQJ sing 239 n y C16 N6 LQJ sing 240 n y C14 N6 LQJ sing 241 n y N6 C13 LQJ sing 242 n n C13 C19 LQJ sing 243 n n C13 O7 LQJ sing 244 n n O3 C9 LQJ sing 245 n n C19 O8 LQJ sing 246 n n C19 C20 LQJ sing 247 n n O8 P2 LQJ sing 248 n n O7 C12 LQJ sing 249 n n C4 N2 LQJ doub 250 n y C4 N1 LQJ sing 251 n y C9 C3 LQJ sing 252 n n C9 C10 LQJ sing 253 n n N2 C5 LQJ sing 254 n y O5 P1 LQJ doub 255 n n C20 C12 LQJ sing 256 n n C20 O9 LQJ sing 257 n n O6 P1 LQJ sing 258 n n O6 C11 LQJ sing 259 n n O4 C10 LQJ sing 260 n n O4 P1 LQJ sing 261 n n C12 C11 LQJ sing 262 n n P2 O10 LQJ doub 263 n n P2 O11 LQJ sing 264 n n P2 O9 LQJ sing 265 n n N1 C3 LQJ sing 266 n n N1 C6 LQJ sing 267 n y C3 O2 LQJ sing 268 n n C5 C6 LQJ doub 269 n y C5 C8 LQJ sing 270 n y N5 C8 LQJ sing 271 n n C10 C2 LQJ sing 272 n n P1 O12 LQJ sing 273 n n C6 N3 LQJ sing 274 n y C8 N4 LQJ doub 275 n y N3 C7 LQJ doub 276 n y N4 C7 LQJ sing 277 n y O2 C2 LQJ sing 278 n n C2 C1 LQJ sing 279 n n O1 C1 LQJ sing 280 n n C2 H1 LQJ sing 281 n n C4 H2 LQJ sing 282 n n N5 H3 LQJ sing 283 n n N5 H4 LQJ sing 284 n n C7 H5 LQJ sing 285 n n C3 H6 LQJ sing 286 n n C9 H7 LQJ sing 287 n n O3 H8 LQJ sing 288 n n C1 H9 LQJ sing 289 n n C1 H10 LQJ sing 290 n n O1 H11 LQJ sing 291 n n C10 H12 LQJ sing 292 n n O12 H13 LQJ sing 293 n n C11 H14 LQJ sing 294 n n C11 H15 LQJ sing 295 n n C12 H16 LQJ sing 296 n n C20 H17 LQJ sing 297 n n O11 H18 LQJ sing 298 n n C19 H19 LQJ sing 299 n n C13 H20 LQJ sing 300 n n C14 H21 LQJ sing 301 n n C17 H22 LQJ sing 302 n n N10 H23 LQJ sing 303 n n N10 H24 LQJ sing 304 n n # _atom_sites.entry_id 6O6Y _atom_sites.fract_transf_matrix[1][1] 0.009666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACK A 1 501 14 ACK A1P . D 3 LQJ A 1 502 2 LQJ A2P . E 2 ACK B 1 501 15 ACK A1P . F 3 LQJ B 1 502 1 LQJ A2P . G 4 HOH A 1 601 19 HOH HOH . G 4 HOH A 2 602 115 HOH HOH . G 4 HOH A 3 603 128 HOH HOH . G 4 HOH A 4 604 120 HOH HOH . G 4 HOH A 5 605 66 HOH HOH . G 4 HOH A 6 606 101 HOH HOH . G 4 HOH A 7 607 112 HOH HOH . G 4 HOH A 8 608 109 HOH HOH . G 4 HOH A 9 609 106 HOH HOH . G 4 HOH A 10 610 38 HOH HOH . G 4 HOH A 11 611 105 HOH HOH . G 4 HOH A 12 612 39 HOH HOH . G 4 HOH A 13 613 25 HOH HOH . G 4 HOH A 14 614 90 HOH HOH . G 4 HOH A 15 615 34 HOH HOH . G 4 HOH A 16 616 30 HOH HOH . G 4 HOH A 17 617 113 HOH HOH . G 4 HOH A 18 618 15 HOH HOH . G 4 HOH A 19 619 121 HOH HOH . G 4 HOH A 20 620 1 HOH HOH . G 4 HOH A 21 621 37 HOH HOH . G 4 HOH A 22 622 74 HOH HOH . G 4 HOH A 23 623 36 HOH HOH . G 4 HOH A 24 624 119 HOH HOH . G 4 HOH A 25 625 103 HOH HOH . G 4 HOH A 26 626 70 HOH HOH . G 4 HOH A 27 627 55 HOH HOH . G 4 HOH A 28 628 41 HOH HOH . G 4 HOH A 29 629 33 HOH HOH . G 4 HOH A 30 630 89 HOH HOH . G 4 HOH A 31 631 40 HOH HOH . G 4 HOH A 32 632 108 HOH HOH . G 4 HOH A 33 633 116 HOH HOH . G 4 HOH A 34 634 26 HOH HOH . G 4 HOH A 35 635 88 HOH HOH . G 4 HOH A 36 636 20 HOH HOH . G 4 HOH A 37 637 93 HOH HOH . G 4 HOH A 38 638 49 HOH HOH . G 4 HOH A 39 639 111 HOH HOH . G 4 HOH A 40 640 65 HOH HOH . G 4 HOH A 41 641 50 HOH HOH . G 4 HOH A 42 642 46 HOH HOH . G 4 HOH A 43 643 69 HOH HOH . G 4 HOH A 44 644 22 HOH HOH . G 4 HOH A 45 645 14 HOH HOH . G 4 HOH A 46 646 42 HOH HOH . G 4 HOH A 47 647 53 HOH HOH . G 4 HOH A 48 648 117 HOH HOH . G 4 HOH A 49 649 12 HOH HOH . G 4 HOH A 50 650 84 HOH HOH . G 4 HOH A 51 651 48 HOH HOH . G 4 HOH A 52 652 104 HOH HOH . G 4 HOH A 53 653 28 HOH HOH . G 4 HOH A 54 654 8 HOH HOH . G 4 HOH A 55 655 57 HOH HOH . G 4 HOH A 56 656 9 HOH HOH . G 4 HOH A 57 657 62 HOH HOH . G 4 HOH A 58 658 54 HOH HOH . G 4 HOH A 59 659 6 HOH HOH . G 4 HOH A 60 660 110 HOH HOH . G 4 HOH A 61 661 122 HOH HOH . G 4 HOH A 62 662 51 HOH HOH . G 4 HOH A 63 663 99 HOH HOH . G 4 HOH A 64 664 127 HOH HOH . G 4 HOH A 65 665 44 HOH HOH . H 4 HOH B 1 601 102 HOH HOH . H 4 HOH B 2 602 76 HOH HOH . H 4 HOH B 3 603 125 HOH HOH . H 4 HOH B 4 604 27 HOH HOH . H 4 HOH B 5 605 29 HOH HOH . H 4 HOH B 6 606 97 HOH HOH . H 4 HOH B 7 607 92 HOH HOH . H 4 HOH B 8 608 114 HOH HOH . H 4 HOH B 9 609 118 HOH HOH . H 4 HOH B 10 610 5 HOH HOH . H 4 HOH B 11 611 68 HOH HOH . H 4 HOH B 12 612 82 HOH HOH . H 4 HOH B 13 613 13 HOH HOH . H 4 HOH B 14 614 21 HOH HOH . H 4 HOH B 15 615 3 HOH HOH . H 4 HOH B 16 616 86 HOH HOH . H 4 HOH B 17 617 10 HOH HOH . H 4 HOH B 18 618 4 HOH HOH . H 4 HOH B 19 619 73 HOH HOH . H 4 HOH B 20 620 81 HOH HOH . H 4 HOH B 21 621 23 HOH HOH . H 4 HOH B 22 622 35 HOH HOH . H 4 HOH B 23 623 32 HOH HOH . H 4 HOH B 24 624 58 HOH HOH . H 4 HOH B 25 625 47 HOH HOH . H 4 HOH B 26 626 124 HOH HOH . H 4 HOH B 27 627 7 HOH HOH . H 4 HOH B 28 628 64 HOH HOH . H 4 HOH B 29 629 18 HOH HOH . H 4 HOH B 30 630 17 HOH HOH . H 4 HOH B 31 631 45 HOH HOH . H 4 HOH B 32 632 59 HOH HOH . H 4 HOH B 33 633 75 HOH HOH . H 4 HOH B 34 634 2 HOH HOH . H 4 HOH B 35 635 31 HOH HOH . H 4 HOH B 36 636 67 HOH HOH . H 4 HOH B 37 637 83 HOH HOH . H 4 HOH B 38 638 107 HOH HOH . H 4 HOH B 39 639 71 HOH HOH . H 4 HOH B 40 640 61 HOH HOH . H 4 HOH B 41 641 85 HOH HOH . H 4 HOH B 42 642 126 HOH HOH . H 4 HOH B 43 643 72 HOH HOH . H 4 HOH B 44 644 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LQJ . . . F 3 -12.068 13.695 -8.134 1 87.42 ? P1 LQJ 502 B 1 HETATM 2 P P2 LQJ . . . F 3 -18.626 11.127 -8.794 1 113.45 ? P2 LQJ 502 B 1 HETATM 3 N N9 LQJ . . . F 3 -16.997 12.584 -15.786 1 92.84 ? N9 LQJ 502 B 1 HETATM 4 C C8 LQJ . . . F 3 -3.8 9.601 -7.882 1 56.99 ? C8 LQJ 502 B 1 HETATM 5 N N7 LQJ . . . F 3 -15.197 9.747 -14.41 1 95.21 ? N7 LQJ 502 B 1 HETATM 6 C C5 LQJ . . . F 3 -4.541 10.674 -8.213 1 60.02 ? C5 LQJ 502 B 1 HETATM 7 C C6 LQJ . . . F 3 -5.86 10.701 -7.974 1 59.94 ? C6 LQJ 502 B 1 HETATM 8 N N6 LQJ . . . F 3 -15.72 10.574 -12.497 1 96.42 ? N6 LQJ 502 B 1 HETATM 9 N N1 LQJ . . . F 3 -6.324 11.88 -8.403 1 63.97 ? N1 LQJ 502 B 1 HETATM 10 C C2 LQJ . . . F 3 -9.448 12.184 -6.746 1 74.15 ? C2 LQJ 502 B 1 HETATM 11 N N3 LQJ . . . F 3 -6.492 9.651 -7.41 1 56.05 ? N3 LQJ 502 B 1 HETATM 12 C C4 LQJ . . . F 3 -5.298 12.593 -8.863 1 60.85 ? C4 LQJ 502 B 1 HETATM 13 N N5 LQJ . . . F 3 -2.49 9.663 -8.135 1 56.91 ? N5 LQJ 502 B 1 HETATM 14 N N4 LQJ . . . F 3 -4.33 8.512 -7.322 1 52.32 ? N4 LQJ 502 B 1 HETATM 15 C C7 LQJ . . . F 3 -5.779 8.413 -7.028 1 55.26 ? C7 LQJ 502 B 1 HETATM 16 N N2 LQJ . . . F 3 -4.2 11.85 -8.754 1 60.43 ? N2 LQJ 502 B 1 HETATM 17 C C3 LQJ . . . F 3 -7.707 12.446 -8.311 1 67.92 ? C3 LQJ 502 B 1 HETATM 18 C C9 LQJ . . . F 3 -8.798 11.643 -8.984 1 70.68 ? C9 LQJ 502 B 1 HETATM 19 O O3 LQJ . . . F 3 -8.958 12.103 -10.326 1 70.36 ? O3 LQJ 502 B 1 HETATM 20 O O2 LQJ . . . F 3 -8.029 12.437 -6.907 1 65.87 ? O2 LQJ 502 B 1 HETATM 21 C C1 LQJ . . . F 3 -9.75 10.937 -5.878 1 74.92 ? C1 LQJ 502 B 1 HETATM 22 O O1 LQJ . . . F 3 -9.075 9.769 -6.379 1 78.78 ? O1 LQJ 502 B 1 HETATM 23 C C10 LQJ . . . F 3 -10.014 12.016 -8.163 1 73.68 ? C10 LQJ 502 B 1 HETATM 24 O O4 LQJ . . . F 3 -10.576 13.274 -8.606 1 79.15 ? O4 LQJ 502 B 1 HETATM 25 O O5 LQJ . . . F 3 -12.433 14.999 -8.728 1 88.79 ? O5 LQJ 502 B 1 HETATM 26 O O12 LQJ . . . F 3 -12.19 13.524 -6.671 1 89.17 ? O12 LQJ 502 B 1 HETATM 27 O O6 LQJ . . . F 3 -12.968 12.553 -8.836 1 89.17 ? O6 LQJ 502 B 1 HETATM 28 C C11 LQJ . . . F 3 -13.997 11.925 -8.07 1 94.84 ? C11 LQJ 502 B 1 HETATM 29 C C12 LQJ . . . F 3 -14.971 11.149 -8.97 1 101.17 ? C12 LQJ 502 B 1 HETATM 30 O O7 LQJ . . . F 3 -14.578 11.07 -10.366 1 102.44 ? O7 LQJ 502 B 1 HETATM 31 C C20 LQJ . . . F 3 -16.34 11.85 -9.009 1 105.83 ? C20 LQJ 502 B 1 HETATM 32 O O9 LQJ . . . F 3 -17.228 11.25 -8.041 1 109.46 ? O9 LQJ 502 B 1 HETATM 33 O O10 LQJ . . . F 3 -19.322 12.428 -8.691 1 104.96 ? O10 LQJ 502 B 1 HETATM 34 O O11 LQJ . . . F 3 -19.3 9.889 -8.333 1 115.83 ? O11 LQJ 502 B 1 HETATM 35 O O8 LQJ . . . F 3 -18.151 10.88 -10.312 1 107.67 ? O8 LQJ 502 B 1 HETATM 36 C C19 LQJ . . . F 3 -16.87 11.548 -10.422 1 105.24 ? C19 LQJ 502 B 1 HETATM 37 C C13 LQJ . . . F 3 -15.79 10.61 -10.997 1 102.84 ? C13 LQJ 502 B 1 HETATM 38 C C14 LQJ . . . F 3 -15.091 9.574 -13.101 1 93.79 ? C14 LQJ 502 B 1 HETATM 39 C C15 LQJ . . . F 3 -15.902 10.855 -14.628 1 96.67 ? C15 LQJ 502 B 1 HETATM 40 C C16 LQJ . . . F 3 -16.233 11.365 -13.44 1 95.44 ? C16 LQJ 502 B 1 HETATM 41 N N8 LQJ . . . F 3 -16.96 12.492 -13.358 1 95.47 ? N8 LQJ 502 B 1 HETATM 42 C C17 LQJ . . . F 3 -17.428 13.25 -14.541 1 95.2 ? C17 LQJ 502 B 1 HETATM 43 C C18 LQJ . . . F 3 -16.281 11.453 -15.763 1 95.23 ? C18 LQJ 502 B 1 HETATM 44 N N10 LQJ . . . F 3 -15.906 10.87 -16.9 1 95.11 ? N10 LQJ 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #