data_6O6Z # _model_server_result.job_id cwKgcsFiPKc80TJ_RMBQYQ _model_server_result.datetime_utc '2024-11-15 14:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6O6Z # _exptl.entry_id 6O6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 658.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O6Z _cell.length_a 54.292 _cell.length_b 115.94 _cell.length_c 159.399 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H24 N10 O12 P2' _chem_comp.formula_weight 658.412 _chem_comp.id LQJ _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C18 LQJ sing 194 n n N9 C18 LQJ doub 195 n y N9 C17 LQJ sing 196 n y C18 C15 LQJ sing 197 n y C17 N8 LQJ doub 198 n y C15 N7 LQJ sing 199 n y C15 C16 LQJ doub 200 n y N7 C14 LQJ doub 201 n y C16 N8 LQJ sing 202 n y C16 N6 LQJ sing 203 n y C14 N6 LQJ sing 204 n y N6 C13 LQJ sing 205 n n C13 C19 LQJ sing 206 n n C13 O7 LQJ sing 207 n n O3 C9 LQJ sing 208 n n C19 O8 LQJ sing 209 n n C19 C20 LQJ sing 210 n n O8 P2 LQJ sing 211 n n O7 C12 LQJ sing 212 n n C4 N2 LQJ doub 213 n y C4 N1 LQJ sing 214 n y C9 C3 LQJ sing 215 n n C9 C10 LQJ sing 216 n n N2 C5 LQJ sing 217 n y O5 P1 LQJ doub 218 n n C20 C12 LQJ sing 219 n n C20 O9 LQJ sing 220 n n O6 P1 LQJ sing 221 n n O6 C11 LQJ sing 222 n n O4 C10 LQJ sing 223 n n O4 P1 LQJ sing 224 n n C12 C11 LQJ sing 225 n n P2 O10 LQJ doub 226 n n P2 O11 LQJ sing 227 n n P2 O9 LQJ sing 228 n n N1 C3 LQJ sing 229 n n N1 C6 LQJ sing 230 n y C3 O2 LQJ sing 231 n n C5 C6 LQJ doub 232 n y C5 C8 LQJ sing 233 n y N5 C8 LQJ sing 234 n n C10 C2 LQJ sing 235 n n P1 O12 LQJ sing 236 n n C6 N3 LQJ sing 237 n y C8 N4 LQJ doub 238 n y N3 C7 LQJ doub 239 n y N4 C7 LQJ sing 240 n y O2 C2 LQJ sing 241 n n C2 C1 LQJ sing 242 n n O1 C1 LQJ sing 243 n n C2 H1 LQJ sing 244 n n C4 H2 LQJ sing 245 n n N5 H3 LQJ sing 246 n n N5 H4 LQJ sing 247 n n C7 H5 LQJ sing 248 n n C3 H6 LQJ sing 249 n n C9 H7 LQJ sing 250 n n O3 H8 LQJ sing 251 n n C1 H9 LQJ sing 252 n n C1 H10 LQJ sing 253 n n O1 H11 LQJ sing 254 n n C10 H12 LQJ sing 255 n n O12 H13 LQJ sing 256 n n C11 H14 LQJ sing 257 n n C11 H15 LQJ sing 258 n n C12 H16 LQJ sing 259 n n C20 H17 LQJ sing 260 n n O11 H18 LQJ sing 261 n n C19 H19 LQJ sing 262 n n C13 H20 LQJ sing 263 n n C14 H21 LQJ sing 264 n n C17 H22 LQJ sing 265 n n N10 H23 LQJ sing 266 n n N10 H24 LQJ sing 267 n n # _atom_sites.entry_id 6O6Z _atom_sites.fract_transf_matrix[1][1] 0.018419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LQJ A 1 501 2 LQJ A2P . D 2 LQJ B 1 501 1 LQJ A2P . E 3 HOH A 1 601 224 HOH HOH . E 3 HOH A 2 602 223 HOH HOH . E 3 HOH A 3 603 60 HOH HOH . E 3 HOH A 4 604 91 HOH HOH . E 3 HOH A 5 605 100 HOH HOH . E 3 HOH A 6 606 77 HOH HOH . E 3 HOH A 7 607 45 HOH HOH . E 3 HOH A 8 608 35 HOH HOH . E 3 HOH A 9 609 158 HOH HOH . E 3 HOH A 10 610 98 HOH HOH . E 3 HOH A 11 611 47 HOH HOH . E 3 HOH A 12 612 37 HOH HOH . E 3 HOH A 13 613 16 HOH HOH . E 3 HOH A 14 614 46 HOH HOH . E 3 HOH A 15 615 21 HOH HOH . E 3 HOH A 16 616 102 HOH HOH . E 3 HOH A 17 617 220 HOH HOH . E 3 HOH A 18 618 20 HOH HOH . E 3 HOH A 19 619 11 HOH HOH . E 3 HOH A 20 620 67 HOH HOH . E 3 HOH A 21 621 22 HOH HOH . E 3 HOH A 22 622 214 HOH HOH . E 3 HOH A 23 623 31 HOH HOH . E 3 HOH A 24 624 149 HOH HOH . E 3 HOH A 25 625 50 HOH HOH . E 3 HOH A 26 626 90 HOH HOH . E 3 HOH A 27 627 5 HOH HOH . E 3 HOH A 28 628 71 HOH HOH . E 3 HOH A 29 629 95 HOH HOH . E 3 HOH A 30 630 123 HOH HOH . E 3 HOH A 31 631 18 HOH HOH . E 3 HOH A 32 632 119 HOH HOH . E 3 HOH A 33 633 30 HOH HOH . E 3 HOH A 34 634 52 HOH HOH . E 3 HOH A 35 635 53 HOH HOH . E 3 HOH A 36 636 2 HOH HOH . E 3 HOH A 37 637 84 HOH HOH . E 3 HOH A 38 638 1 HOH HOH . E 3 HOH A 39 639 166 HOH HOH . E 3 HOH A 40 640 139 HOH HOH . E 3 HOH A 41 641 27 HOH HOH . E 3 HOH A 42 642 34 HOH HOH . E 3 HOH A 43 643 179 HOH HOH . E 3 HOH A 44 644 17 HOH HOH . E 3 HOH A 45 645 25 HOH HOH . E 3 HOH A 46 646 114 HOH HOH . E 3 HOH A 47 647 112 HOH HOH . E 3 HOH A 48 648 219 HOH HOH . E 3 HOH A 49 649 61 HOH HOH . E 3 HOH A 50 650 128 HOH HOH . E 3 HOH A 51 651 7 HOH HOH . E 3 HOH A 52 652 146 HOH HOH . E 3 HOH A 53 653 81 HOH HOH . E 3 HOH A 54 654 39 HOH HOH . E 3 HOH A 55 655 4 HOH HOH . E 3 HOH A 56 656 130 HOH HOH . E 3 HOH A 57 657 89 HOH HOH . E 3 HOH A 58 658 109 HOH HOH . E 3 HOH A 59 659 58 HOH HOH . E 3 HOH A 60 660 150 HOH HOH . E 3 HOH A 61 661 14 HOH HOH . E 3 HOH A 62 662 79 HOH HOH . E 3 HOH A 63 663 82 HOH HOH . E 3 HOH A 64 664 83 HOH HOH . E 3 HOH A 65 665 49 HOH HOH . E 3 HOH A 66 666 160 HOH HOH . E 3 HOH A 67 667 19 HOH HOH . E 3 HOH A 68 668 165 HOH HOH . E 3 HOH A 69 669 29 HOH HOH . E 3 HOH A 70 670 204 HOH HOH . E 3 HOH A 71 671 62 HOH HOH . E 3 HOH A 72 672 88 HOH HOH . E 3 HOH A 73 673 59 HOH HOH . E 3 HOH A 74 674 205 HOH HOH . E 3 HOH A 75 675 209 HOH HOH . E 3 HOH A 76 676 217 HOH HOH . E 3 HOH A 77 677 104 HOH HOH . E 3 HOH A 78 678 110 HOH HOH . E 3 HOH A 79 679 207 HOH HOH . F 3 HOH B 1 601 28 HOH HOH . F 3 HOH B 2 602 216 HOH HOH . F 3 HOH B 3 603 64 HOH HOH . F 3 HOH B 4 604 118 HOH HOH . F 3 HOH B 5 605 93 HOH HOH . F 3 HOH B 6 606 182 HOH HOH . F 3 HOH B 7 607 94 HOH HOH . F 3 HOH B 8 608 92 HOH HOH . F 3 HOH B 9 609 121 HOH HOH . F 3 HOH B 10 610 101 HOH HOH . F 3 HOH B 11 611 57 HOH HOH . F 3 HOH B 12 612 55 HOH HOH . F 3 HOH B 13 613 103 HOH HOH . F 3 HOH B 14 614 66 HOH HOH . F 3 HOH B 15 615 23 HOH HOH . F 3 HOH B 16 616 48 HOH HOH . F 3 HOH B 17 617 117 HOH HOH . F 3 HOH B 18 618 42 HOH HOH . F 3 HOH B 19 619 141 HOH HOH . F 3 HOH B 20 620 134 HOH HOH . F 3 HOH B 21 621 8 HOH HOH . F 3 HOH B 22 622 86 HOH HOH . F 3 HOH B 23 623 32 HOH HOH . F 3 HOH B 24 624 159 HOH HOH . F 3 HOH B 25 625 44 HOH HOH . F 3 HOH B 26 626 140 HOH HOH . F 3 HOH B 27 627 115 HOH HOH . F 3 HOH B 28 628 138 HOH HOH . F 3 HOH B 29 629 40 HOH HOH . F 3 HOH B 30 630 96 HOH HOH . F 3 HOH B 31 631 99 HOH HOH . F 3 HOH B 32 632 56 HOH HOH . F 3 HOH B 33 633 70 HOH HOH . F 3 HOH B 34 634 113 HOH HOH . F 3 HOH B 35 635 75 HOH HOH . F 3 HOH B 36 636 145 HOH HOH . F 3 HOH B 37 637 26 HOH HOH . F 3 HOH B 38 638 120 HOH HOH . F 3 HOH B 39 639 108 HOH HOH . F 3 HOH B 40 640 10 HOH HOH . F 3 HOH B 41 641 126 HOH HOH . F 3 HOH B 42 642 65 HOH HOH . F 3 HOH B 43 643 73 HOH HOH . F 3 HOH B 44 644 80 HOH HOH . F 3 HOH B 45 645 69 HOH HOH . F 3 HOH B 46 646 3 HOH HOH . F 3 HOH B 47 647 162 HOH HOH . F 3 HOH B 48 648 164 HOH HOH . F 3 HOH B 49 649 54 HOH HOH . F 3 HOH B 50 650 24 HOH HOH . F 3 HOH B 51 651 85 HOH HOH . F 3 HOH B 52 652 124 HOH HOH . F 3 HOH B 53 653 38 HOH HOH . F 3 HOH B 54 654 15 HOH HOH . F 3 HOH B 55 655 33 HOH HOH . F 3 HOH B 56 656 74 HOH HOH . F 3 HOH B 57 657 12 HOH HOH . F 3 HOH B 58 658 6 HOH HOH . F 3 HOH B 59 659 218 HOH HOH . F 3 HOH B 60 660 72 HOH HOH . F 3 HOH B 61 661 107 HOH HOH . F 3 HOH B 62 662 143 HOH HOH . F 3 HOH B 63 663 13 HOH HOH . F 3 HOH B 64 664 78 HOH HOH . F 3 HOH B 65 665 105 HOH HOH . F 3 HOH B 66 666 76 HOH HOH . F 3 HOH B 67 667 208 HOH HOH . F 3 HOH B 68 668 43 HOH HOH . F 3 HOH B 69 669 9 HOH HOH . F 3 HOH B 70 670 206 HOH HOH . F 3 HOH B 71 671 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LQJ . . . D 2 -1.705 11.977 -65.025 1 42.16 ? P1 LQJ 501 B 1 HETATM 2 P P2 LQJ . . . D 2 -3.635 17.64 -67.023 1 90.51 ? P2 LQJ 501 B 1 HETATM 3 N N9 LQJ . . . D 2 3.847 19.894 -65.771 1 56.73 ? N9 LQJ 501 B 1 HETATM 4 C C8 LQJ . . . D 2 1.604 5.434 -70.772 1 39.24 ? C8 LQJ 501 B 1 HETATM 5 N N7 LQJ . . . D 2 2.842 18.319 -68.901 1 60.91 ? N7 LQJ 501 B 1 HETATM 6 C C5 LQJ . . . D 2 1.666 5.968 -69.546 1 36.34 ? C5 LQJ 501 B 1 HETATM 7 C C6 LQJ . . . D 2 0.849 6.974 -69.21 1 40.38 ? C6 LQJ 501 B 1 HETATM 8 N N6 LQJ . . . D 2 1.09 17.678 -67.801 1 61.7 ? N6 LQJ 501 B 1 HETATM 9 N N1 LQJ . . . D 2 1.188 7.392 -67.993 1 42.56 ? N1 LQJ 501 B 1 HETATM 10 C C2 LQJ . . . D 2 -1.974 8.999 -67.067 1 42.16 ? C2 LQJ 501 B 1 HETATM 11 N N3 LQJ . . . D 2 -0.148 7.409 -69.993 1 37.45 ? N3 LQJ 501 B 1 HETATM 12 C C4 LQJ . . . D 2 2.281 6.681 -67.598 1 37.29 ? C4 LQJ 501 B 1 HETATM 13 N N5 LQJ . . . D 2 2.433 4.446 -71.086 1 32.1 ? N5 LQJ 501 B 1 HETATM 14 N N4 LQJ . . . D 2 0.634 5.748 -71.625 1 41.55 ? N4 LQJ 501 B 1 HETATM 15 C C7 LQJ . . . D 2 -0.335 6.819 -71.316 1 41.94 ? C7 LQJ 501 B 1 HETATM 16 N N2 LQJ . . . D 2 2.549 5.794 -68.535 1 37.9 ? N2 LQJ 501 B 1 HETATM 17 C C3 LQJ . . . D 2 0.346 8.419 -67.154 1 39.18 ? C3 LQJ 501 B 1 HETATM 18 C C9 LQJ . . . D 2 0.182 9.787 -67.713 1 45.69 ? C9 LQJ 501 B 1 HETATM 19 O O3 LQJ . . . D 2 1.26 10.549 -67.159 1 49.82 ? O3 LQJ 501 B 1 HETATM 20 O O2 LQJ . . . D 2 -0.992 7.931 -67.094 1 40.66 ? O2 LQJ 501 B 1 HETATM 21 C C1 LQJ . . . D 2 -2.976 8.969 -68.248 1 45.99 ? C1 LQJ 501 B 1 HETATM 22 O O1 LQJ . . . D 2 -2.326 9.043 -69.558 1 47.23 ? O1 LQJ 501 B 1 HETATM 23 C C10 LQJ . . . D 2 -1.158 10.246 -67.108 1 44.08 ? C10 LQJ 501 B 1 HETATM 24 O O4 LQJ . . . D 2 -0.918 10.732 -65.741 1 42.07 ? O4 LQJ 501 B 1 HETATM 25 O O5 LQJ . . . D 2 -1.049 12.245 -63.722 1 42.45 ? O5 LQJ 501 B 1 HETATM 26 O O12 LQJ . . . D 2 -3.163 11.698 -65.082 1 41.5 ? O12 LQJ 501 B 1 HETATM 27 O O6 LQJ . . . D 2 -1.566 13.265 -66.017 1 50.31 ? O6 LQJ 501 B 1 HETATM 28 C C11 LQJ . . . D 2 -0.597 13.508 -66.941 1 56.15 ? C11 LQJ 501 B 1 HETATM 29 C C12 LQJ . . . D 2 -0.884 14.909 -67.484 1 67.8 ? C12 LQJ 501 B 1 HETATM 30 O O7 LQJ . . . D 2 0.324 15.65 -67.235 1 67.95 ? O7 LQJ 501 B 1 HETATM 31 C C20 LQJ . . . D 2 -1.952 15.826 -66.767 1 75.11 ? C20 LQJ 501 B 1 HETATM 32 O O9 LQJ . . . D 2 -3.125 16.133 -67.593 1 70.57 ? O9 LQJ 501 B 1 HETATM 33 O O10 LQJ . . . D 2 -4.258 17.638 -65.605 1 60.59 ? O10 LQJ 501 B 1 HETATM 34 O O11 LQJ . . . D 2 -4.326 18.295 -68.164 1 78.16 ? O11 LQJ 501 B 1 HETATM 35 O O8 LQJ . . . D 2 -2.157 18.291 -67.028 1 75.35 ? O8 LQJ 501 B 1 HETATM 36 C C19 LQJ . . . D 2 -1.208 17.201 -66.672 1 79.95 ? C19 LQJ 501 B 1 HETATM 37 C C13 LQJ . . . D 2 -0.132 16.907 -67.737 1 70.61 ? C13 LQJ 501 B 1 HETATM 38 C C14 LQJ . . . D 2 1.707 17.63 -68.992 1 58.94 ? C14 LQJ 501 B 1 HETATM 39 C C15 LQJ . . . D 2 2.935 18.8 -67.652 1 62.92 ? C15 LQJ 501 B 1 HETATM 40 C C16 LQJ . . . D 2 1.862 18.37 -66.948 1 61.66 ? C16 LQJ 501 B 1 HETATM 41 N N8 LQJ . . . D 2 1.72 18.675 -65.646 1 58.52 ? N8 LQJ 501 B 1 HETATM 42 C C17 LQJ . . . D 2 2.705 19.504 -64.895 1 57.89 ? C17 LQJ 501 B 1 HETATM 43 C C18 LQJ . . . D 2 3.875 19.561 -67.082 1 60.11 ? C18 LQJ 501 B 1 HETATM 44 N N10 LQJ . . . D 2 4.886 19.923 -67.867 1 52.55 ? N10 LQJ 501 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #