data_6O70
#
_model_server_result.job_id            g72hAXE9144cWyx3gL33QA 
_model_server_result.datetime_utc      '2024-11-15 05:38:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o70 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    6O70 
#
_exptl.entry_id    6O70 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O70 
_cell.length_a            103.119 
_cell.length_b            163.779 
_cell.length_c            110.71 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O70 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                LQJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N10 C18 LQJ sing 231 n n 
N9 C18 LQJ doub 232 n y 
N9 C17 LQJ sing 233 n y 
C18 C15 LQJ sing 234 n y 
C17 N8 LQJ doub 235 n y 
C15 N7 LQJ sing 236 n y 
C15 C16 LQJ doub 237 n y 
N7 C14 LQJ doub 238 n y 
C16 N8 LQJ sing 239 n y 
C16 N6 LQJ sing 240 n y 
C14 N6 LQJ sing 241 n y 
N6 C13 LQJ sing 242 n n 
C13 C19 LQJ sing 243 n n 
C13 O7 LQJ sing 244 n n 
O3 C9 LQJ sing 245 n n 
C19 O8 LQJ sing 246 n n 
C19 C20 LQJ sing 247 n n 
O8 P2 LQJ sing 248 n n 
O7 C12 LQJ sing 249 n n 
C4 N2 LQJ doub 250 n y 
C4 N1 LQJ sing 251 n y 
C9 C3 LQJ sing 252 n n 
C9 C10 LQJ sing 253 n n 
N2 C5 LQJ sing 254 n y 
O5 P1 LQJ doub 255 n n 
C20 C12 LQJ sing 256 n n 
C20 O9 LQJ sing 257 n n 
O6 P1 LQJ sing 258 n n 
O6 C11 LQJ sing 259 n n 
O4 C10 LQJ sing 260 n n 
O4 P1 LQJ sing 261 n n 
C12 C11 LQJ sing 262 n n 
P2 O10 LQJ doub 263 n n 
P2 O11 LQJ sing 264 n n 
P2 O9 LQJ sing 265 n n 
N1 C3 LQJ sing 266 n n 
N1 C6 LQJ sing 267 n y 
C3 O2 LQJ sing 268 n n 
C5 C6 LQJ doub 269 n y 
C5 C8 LQJ sing 270 n y 
N5 C8 LQJ sing 271 n n 
C10 C2 LQJ sing 272 n n 
P1 O12 LQJ sing 273 n n 
C6 N3 LQJ sing 274 n y 
C8 N4 LQJ doub 275 n y 
N3 C7 LQJ doub 276 n y 
N4 C7 LQJ sing 277 n y 
O2 C2 LQJ sing 278 n n 
C2 C1 LQJ sing 279 n n 
O1 C1 LQJ sing 280 n n 
C2 H1 LQJ sing 281 n n 
C4 H2 LQJ sing 282 n n 
N5 H3 LQJ sing 283 n n 
N5 H4 LQJ sing 284 n n 
C7 H5 LQJ sing 285 n n 
C3 H6 LQJ sing 286 n n 
C9 H7 LQJ sing 287 n n 
O3 H8 LQJ sing 288 n n 
C1 H9 LQJ sing 289 n n 
C1 H10 LQJ sing 290 n n 
O1 H11 LQJ sing 291 n n 
C10 H12 LQJ sing 292 n n 
O12 H13 LQJ sing 293 n n 
C11 H14 LQJ sing 294 n n 
C11 H15 LQJ sing 295 n n 
C12 H16 LQJ sing 296 n n 
C20 H17 LQJ sing 297 n n 
O11 H18 LQJ sing 298 n n 
C19 H19 LQJ sing 299 n n 
C13 H20 LQJ sing 300 n n 
C14 H21 LQJ sing 301 n n 
C17 H22 LQJ sing 302 n n 
N10 H23 LQJ sing 303 n n 
N10 H24 LQJ sing 304 n n 
#
_atom_sites.entry_id                     6O70 
_atom_sites.fract_transf_matrix[1][1]    0.009698 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACK A 1 501 1 ACK A1P . 
D 3 LQJ A 1 502 2 LQJ A2P . 
E 2 ACK B 1 501 2 ACK A1P . 
F 3 LQJ B 1 502 1 LQJ A2P . 
G 4 HOH A 1 601 13 HOH HOH . 
G 4 HOH A 2 602 22 HOH HOH . 
G 4 HOH A 3 603 36 HOH HOH . 
G 4 HOH A 4 604 20 HOH HOH . 
G 4 HOH A 5 605 37 HOH HOH . 
G 4 HOH A 6 606 34 HOH HOH . 
G 4 HOH A 7 607 25 HOH HOH . 
G 4 HOH A 8 608 8 HOH HOH . 
G 4 HOH A 9 609 26 HOH HOH . 
G 4 HOH A 10 610 11 HOH HOH . 
G 4 HOH A 11 611 38 HOH HOH . 
G 4 HOH A 12 612 5 HOH HOH . 
G 4 HOH A 13 613 14 HOH HOH . 
G 4 HOH A 14 614 6 HOH HOH . 
G 4 HOH A 15 615 3 HOH HOH . 
G 4 HOH A 16 616 4 HOH HOH . 
G 4 HOH A 17 617 43 HOH HOH . 
G 4 HOH A 18 618 42 HOH HOH . 
G 4 HOH A 19 619 41 HOH HOH . 
G 4 HOH A 20 620 45 HOH HOH . 
G 4 HOH A 21 621 47 HOH HOH . 
H 4 HOH B 1 601 46 HOH HOH . 
H 4 HOH B 2 602 31 HOH HOH . 
H 4 HOH B 3 603 16 HOH HOH . 
H 4 HOH B 4 604 32 HOH HOH . 
H 4 HOH B 5 605 18 HOH HOH . 
H 4 HOH B 6 606 12 HOH HOH . 
H 4 HOH B 7 607 23 HOH HOH . 
H 4 HOH B 8 608 19 HOH HOH . 
H 4 HOH B 9 609 10 HOH HOH . 
H 4 HOH B 10 610 7 HOH HOH . 
H 4 HOH B 11 611 9 HOH HOH . 
H 4 HOH B 12 612 33 HOH HOH . 
H 4 HOH B 13 613 39 HOH HOH . 
H 4 HOH B 14 614 29 HOH HOH . 
H 4 HOH B 15 615 17 HOH HOH . 
H 4 HOH B 16 616 28 HOH HOH . 
H 4 HOH B 17 617 15 HOH HOH . 
H 4 HOH B 18 618 21 HOH HOH . 
H 4 HOH B 19 619 24 HOH HOH . 
H 4 HOH B 20 620 35 HOH HOH . 
H 4 HOH B 21 621 30 HOH HOH . 
H 4 HOH B 22 622 48 HOH HOH . 
H 4 HOH B 23 623 40 HOH HOH . 
H 4 HOH B 24 624 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 LQJ . . . F 3 12.061 68.198 -7.86 1 106.05 ? P1 LQJ 502 B 1 
HETATM 2 P P2 LQJ . . . F 3 18.593 70.383 -8.32 1 109.87 ? P2 LQJ 502 B 1 
HETATM 3 N N9 LQJ . . . F 3 16.848 69.352 -15.335 1 98.92 ? N9 LQJ 502 B 1 
HETATM 4 C C8 LQJ . . . F 3 3.947 72.547 -7.72 1 64.18 ? C8 LQJ 502 B 1 
HETATM 5 N N7 LQJ . . . F 3 15.145 72.167 -13.794 1 101.14 ? N7 LQJ 502 B 1 
HETATM 6 C C5 LQJ . . . F 3 4.602 71.433 -8.085 1 68.87 ? C5 LQJ 502 B 1 
HETATM 7 C C6 LQJ . . . F 3 5.908 71.284 -7.825 1 69.66 ? C6 LQJ 502 B 1 
HETATM 8 N N6 LQJ . . . F 3 15.723 71.275 -11.923 1 104.61 ? N6 LQJ 502 B 1 
HETATM 9 N N1 LQJ . . . F 3 6.297 70.096 -8.308 1 73.78 ? N1 LQJ 502 B 1 
HETATM 10 C C2 LQJ . . . F 3 9.277 69.575 -6.528 1 87.01 ? C2 LQJ 502 B 1 
HETATM 11 N N3 LQJ . . . F 3 6.601 72.253 -7.203 1 64.44 ? N3 LQJ 502 B 1 
HETATM 12 C C4 LQJ . . . F 3 5.229 69.495 -8.823 1 69.9 ? C4 LQJ 502 B 1 
HETATM 13 N N5 LQJ . . . F 3 2.646 72.609 -7.999 1 64.41 ? N5 LQJ 502 B 1 
HETATM 14 N N4 LQJ . . . F 3 4.544 73.567 -7.101 1 61.49 ? N4 LQJ 502 B 1 
HETATM 15 C C7 LQJ . . . F 3 5.981 73.524 -6.765 1 66.43 ? C7 LQJ 502 B 1 
HETATM 16 N N2 LQJ . . . F 3 4.19 70.319 -8.702 1 68.13 ? N2 LQJ 502 B 1 
HETATM 17 C C3 LQJ . . . F 3 7.648 69.458 -8.229 1 79.32 ? C3 LQJ 502 B 1 
HETATM 18 C C9 LQJ . . . F 3 8.827 70.293 -8.76 1 83.98 ? C9 LQJ 502 B 1 
HETATM 19 O O3 LQJ . . . F 3 9.154 69.963 -10.118 1 87.05 ? O3 LQJ 502 B 1 
HETATM 20 O O2 LQJ . . . F 3 7.864 69.348 -6.808 1 81.78 ? O2 LQJ 502 B 1 
HETATM 21 C C1 LQJ . . . F 3 9.472 70.742 -5.534 1 87.96 ? C1 LQJ 502 B 1 
HETATM 22 O O1 LQJ . . . F 3 9.119 72.019 -6.092 1 85.36 ? O1 LQJ 502 B 1 
HETATM 23 C C10 LQJ . . . F 3 9.967 69.862 -7.866 1 87.97 ? C10 LQJ 502 B 1 
HETATM 24 O O4 LQJ . . . F 3 10.593 68.653 -8.376 1 95.75 ? O4 LQJ 502 B 1 
HETATM 25 O O5 LQJ . . . F 3 12.478 66.983 -8.597 1 106.18 ? O5 LQJ 502 B 1 
HETATM 26 O O12 LQJ . . . F 3 12.094 68.19 -6.376 1 102.72 ? O12 LQJ 502 B 1 
HETATM 27 O O6 LQJ . . . F 3 12.967 69.43 -8.401 1 106.81 ? O6 LQJ 502 B 1 
HETATM 28 C C11 LQJ . . . F 3 13.875 70.129 -7.538 1 109.2 ? C11 LQJ 502 B 1 
HETATM 29 C C12 LQJ . . . F 3 14.991 70.782 -8.367 1 110.5 ? C12 LQJ 502 B 1 
HETATM 30 O O7 LQJ . . . F 3 14.589 71.011 -9.745 1 110.24 ? O7 LQJ 502 B 1 
HETATM 31 C C20 LQJ . . . F 3 16.209 69.847 -8.463 1 109.79 ? C20 LQJ 502 B 1 
HETATM 32 O O9 LQJ . . . F 3 17.219 70.243 -7.509 1 109.34 ? O9 LQJ 502 B 1 
HETATM 33 O O10 LQJ . . . F 3 19.371 69.133 -8.186 1 105.61 ? O10 LQJ 502 B 1 
HETATM 34 O O11 LQJ . . . F 3 19.214 71.676 -7.955 1 110.56 ? O11 LQJ 502 B 1 
HETATM 35 O O8 LQJ . . . F 3 18.115 70.513 -9.842 1 109.72 ? O8 LQJ 502 B 1 
HETATM 36 C C19 LQJ . . . F 3 16.734 70.076 -9.889 1 110.16 ? C19 LQJ 502 B 1 
HETATM 37 C C13 LQJ . . . F 3 15.844 71.21 -10.418 1 108.66 ? C13 LQJ 502 B 1 
HETATM 38 C C14 LQJ . . . F 3 15.09 72.304 -12.475 1 103.12 ? C14 LQJ 502 B 1 
HETATM 39 C C15 LQJ . . . F 3 15.824 71.056 -14.071 1 103.88 ? C15 LQJ 502 B 1 
HETATM 40 C C16 LQJ . . . F 3 16.193 70.503 -12.911 1 105.23 ? C16 LQJ 502 B 1 
HETATM 41 N N8 LQJ . . . F 3 16.906 69.356 -12.897 1 105.5 ? N8 LQJ 502 B 1 
HETATM 42 C C17 LQJ . . . F 3 17.322 68.641 -14.13 1 100.85 ? C17 LQJ 502 B 1 
HETATM 43 C C18 LQJ . . . F 3 16.146 70.489 -15.24 1 102.98 ? C18 LQJ 502 B 1 
HETATM 44 N N10 LQJ . . . F 3 15.735 71.118 -16.338 1 105.39 ? N10 LQJ 502 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#