data_6O74 # _model_server_result.job_id xliJxNwl73akyvfYX5-uZA _model_server_result.datetime_utc '2025-02-22 20:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6O74 # _exptl.entry_id 6O74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O74 _cell.length_a 156.432 _cell.length_b 156.432 _cell.length_c 185.473 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 231 A CYS 217 1_555 B SG CYS 241 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc1 B OD2 ASP 535 A ASP 521 1_555 E MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 B OD1 ASP 535 A ASP 521 1_555 F MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 B O VAL 536 A VAL 522 1_555 E MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 B OD2 ASP 602 A ASP 588 1_555 E MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 B OD1 ASP 602 A ASP 588 1_555 F MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc6 B OD2 ASP 603 A ASP 589 1_555 F MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 C O1G ANP . A ANP 801 1_555 E MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 C O2B ANP . A ANP 801 1_555 E MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc9 C O1A ANP . A ANP 801 1_555 E MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc10 C O1A ANP . A ANP 801 1_555 F MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 D O1B ANP . A ANP 802 1_555 G MN MN . A MN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc12 D O1A ANP . A ANP 802 1_555 G MN MN . A MN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6O74 _atom_sites.fract_transf_matrix[1][1] 0.006393 _atom_sites.fract_transf_matrix[1][2] 0.003691 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 502 ANP ANP . D 3 ANP A 1 802 503 ANP ANP . E 4 MN A 1 803 1 MN MN . F 4 MN A 1 804 2 MN MN . G 4 MN A 1 805 3 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -15.398 -63.794 0.292 1 72.7 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . C 3 -14.757 -62.677 -0.476 1 65.39 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . C 3 -14.765 -65.135 -0.01 1 67.79 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . C 3 -16.827 -63.911 -0.161 1 75.76 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . C 3 -14.554 -62.137 2.532 1 67.83 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . C 3 -14.9 -61.906 3.978 1 73.18 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . C 3 -13.11 -62.148 2.128 1 75.66 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . C 3 -15.29 -63.438 1.878 1 70.9 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . C 3 -14.805 -59.384 1.485 1 67.97 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . C 3 -13.989 -59.423 0.231 1 71.65 ? O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . C 3 -16.029 -58.526 1.511 1 70.57 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . C 3 -15.25 -60.887 1.824 1 64.32 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . C 3 -13.866 -58.975 2.729 1 72.22 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . C 3 -14.421 -58.972 4.075 1 70.62 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . C 3 -14.222 -57.625 4.727 1 65.85 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . C 3 -12.802 -57.393 4.886 1 66.52 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . C 3 -14.766 -56.397 3.979 1 62.77 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . C 3 -15.478 -55.538 4.86 1 65.57 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . C 3 -13.507 -55.695 3.465 1 62.79 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . C 3 -13.616 -54.292 3.365 1 59.32 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . C 3 -12.515 -56.056 4.558 1 64.61 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . C 3 -11.126 -55.985 4.165 1 67.28 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . C 3 -10.577 -56.404 2.989 1 69.07 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . C 3 -9.28 -56.222 2.944 1 71.49 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . C 3 -8.959 -55.682 4.181 1 71.22 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . C 3 -7.741 -55.282 4.756 1 69.23 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . C 3 -6.566 -55.379 4.14 1 67.36 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . C 3 -7.787 -54.792 6.017 1 73.37 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . C 3 -8.973 -54.706 6.635 1 73.21 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . C 3 -10.178 -55.047 6.191 1 74.66 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . C 3 -10.097 -55.534 4.942 1 71.53 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #