data_6O7H # _model_server_result.job_id rK2kUWQz1Ubf1jTUJfSDkw _model_server_result.datetime_utc '2024-12-23 16:58:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":101}' # _entry.id 6O7H # _exptl.entry_id 6O7H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 363.221 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G O3' C 35 H C 35 1_555 M P 5GP . H 5GP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? metalc ? metalc1 A SG CYS 403 A CYS 389 1_555 J ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 A SG CYS 406 A CYS 392 1_555 J ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 A SG CYS 427 A CYS 413 1_555 J ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc4 A SG CYS 430 A CYS 416 1_555 J ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 C NE2 HIS 113 C HIS 111 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 C SG CYS 115 C CYS 113 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc7 C SG CYS 124 C CYS 122 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc8 C SG CYS 127 C CYS 125 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc9 D NE2 HIS 113 D HIS 111 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc10 D SG CYS 115 D CYS 113 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc11 D SG CYS 124 D CYS 122 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc12 D SG CYS 127 D CYS 125 1_555 L ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? hydrog 'G-C PAIR' hydrog1 F N2 G 9 G G 0 1_555 G N3 C 35 H C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 F N3 C 10 G C 1 1_555 G N1 G 34 H G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 F N4 C 10 G C 1 1_555 G O6 G 34 H G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 F O2 C 10 G C 1 1_555 G N2 G 34 H G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 F N1 G 11 G G 2 1_555 G N3 C 33 H C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 F N2 G 11 G G 2 1_555 G O2 C 33 H C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 F O6 G 11 G G 2 1_555 G N4 C 33 H C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 F N1 G 12 G G 3 1_555 G N3 C 32 H C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 F N2 G 12 G G 3 1_555 G O2 C 32 H C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 F O6 G 12 G G 3 1_555 G N4 C 32 H C 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 F N1 G 13 G G 4 1_555 G N3 C 31 H C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 F N2 G 13 G G 4 1_555 G O2 C 31 H C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 F O6 G 13 G G 4 1_555 G N4 C 31 H C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog14 F N1 A 15 G A 6 1_555 G N3 U 29 H U 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F N1 G 16 G G 7 1_555 G N3 C 28 H C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 F N2 G 16 G G 7 1_555 G O2 C 28 H C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 F O6 G 16 G G 7 1_555 G N4 C 28 H C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F N1 A 17 G A 8 1_555 G N3 U 27 H U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N6 A 17 G A 8 1_555 G O4 U 27 H U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog20 F N2 G 18 G G 9 1_555 G O2 C 26 H C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F N1 G 19 G G 10 1_555 G N3 C 25 H C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F N2 G 19 G G 10 1_555 G O2 C 25 H C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F O6 G 19 G G 10 1_555 G N4 C 25 H C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F N1 G 19 G G 10 1_555 G N3 C 26 H C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F N2 G 19 G G 10 1_555 G O2 C 26 H C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F O6 G 19 G G 10 1_555 G N4 C 26 H C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 F N1 G 22 G G 13 1_555 G N3 C 22 H C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 F N2 G 22 G G 13 1_555 G O2 C 22 H C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 F O6 G 22 G G 13 1_555 G N4 C 22 H C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 F N3 U 23 G U 14 1_555 G N1 A 21 H A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 F O4 U 23 G U 14 1_555 G N6 A 21 H A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 F N3 U 24 G U 15 1_555 G N1 A 20 H A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 F O4 U 24 G U 15 1_555 G N6 A 20 H A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 F N3 U 25 G U 16 1_555 G N1 A 19 H A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 F O4 U 25 G U 16 1_555 G N6 A 19 H A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog36 F N1 G 26 G G 17 1_555 G O6 G 17 H G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog37 F N2 G 26 G G 17 1_555 G O2 C 18 H C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 F N3 C 27 G C 18 1_555 G N1 G 17 H G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 F N4 C 27 G C 18 1_555 G O6 G 17 H G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 F O2 C 27 G C 18 1_555 G N2 G 17 H G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 6O7H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 9 ZN A 1 801 801 ZN ZN . K 9 ZN C 1 301 301 ZN ZN . L 9 ZN D 1 301 301 ZN ZN . M 10 5GP H 1 101 101 5GP G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . M 10 152.489 146.657 151.983 1 76.88 ? P 5GP 101 H 1 HETATM 2 O O1P 5GP . . . M 10 153.624 147.096 152.831 1 78.59 ? O1P 5GP 101 H 1 HETATM 3 O O3P 5GP . . . M 10 151.865 145.334 152.221 1 75.2 ? O3P 5GP 101 H 1 HETATM 4 O O5' 5GP . . . M 10 151.341 147.758 152.045 1 78.76 ? O5' 5GP 101 H 1 HETATM 5 C C5' 5GP . . . M 10 150.066 147.457 152.638 1 77.93 ? C5' 5GP 101 H 1 HETATM 6 C C4' 5GP . . . M 10 148.994 147.428 151.577 1 78.66 ? C4' 5GP 101 H 1 HETATM 7 O O4' 5GP . . . M 10 149.363 146.464 150.552 1 79.49 ? O4' 5GP 101 H 1 HETATM 8 C C3' 5GP . . . M 10 147.605 147.021 152.057 1 78.23 ? C3' 5GP 101 H 1 HETATM 9 O O3' 5GP . . . M 10 146.611 147.726 151.323 1 77.17 ? O3' 5GP 101 H 1 HETATM 10 C C2' 5GP . . . M 10 147.566 145.531 151.74 1 79.34 ? C2' 5GP 101 H 1 HETATM 11 O O2' 5GP . . . M 10 146.263 145.022 151.547 1 79.34 ? O2' 5GP 101 H 1 HETATM 12 C C1' 5GP . . . M 10 148.349 145.488 150.431 1 78.22 ? C1' 5GP 101 H 1 HETATM 13 N N9 5GP . . . M 10 148.982 144.199 150.175 1 20 ? N9 5GP 101 H 1 HETATM 14 C C8 5GP . . . M 10 150.318 143.897 150.273 1 20 ? C8 5GP 101 H 1 HETATM 15 N N7 5GP . . . M 10 150.586 142.654 149.98 1 20 ? N7 5GP 101 H 1 HETATM 16 C C5 5GP . . . M 10 149.351 142.101 149.668 1 20 ? C5 5GP 101 H 1 HETATM 17 C C6 5GP . . . M 10 149.009 140.779 149.27 1 20 ? C6 5GP 101 H 1 HETATM 18 O O6 5GP . . . M 10 149.753 139.805 149.111 1 20 ? O6 5GP 101 H 1 HETATM 19 N N1 5GP . . . M 10 147.64 140.647 149.054 1 20 ? N1 5GP 101 H 1 HETATM 20 C C2 5GP . . . M 10 146.719 141.658 149.199 1 20 ? C2 5GP 101 H 1 HETATM 21 N N2 5GP . . . M 10 145.443 141.334 148.945 1 20 ? N2 5GP 101 H 1 HETATM 22 N N3 5GP . . . M 10 147.026 142.894 149.566 1 20 ? N3 5GP 101 H 1 HETATM 23 C C4 5GP . . . M 10 148.351 143.043 149.784 1 20 ? C4 5GP 101 H 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #