data_6O8B # _model_server_result.job_id GzzFhMtkL3yeFJF500otpA _model_server_result.datetime_utc '2024-11-04 20:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 6O8B # _exptl.entry_id 6O8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 591.468 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O8B _cell.length_a 250.69 _cell.length_b 250.69 _cell.length_c 239.241 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C23 H26 I N7 O2 S' _chem_comp.formula_weight 591.468 _chem_comp.id BX7 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 BX7 doub 70 n y C34 S02 BX7 sing 71 n y C33 C32 BX7 sing 72 n y S02 C31 BX7 sing 73 n y C32 C31 BX7 doub 74 n y C31 C29 BX7 sing 75 n n C29 O04 BX7 doub 76 n n C29 N09 BX7 sing 77 n n N09 C23 BX7 sing 78 n n I01 C28 BX7 sing 79 n n C23 C19 BX7 sing 80 n n N07 C21 BX7 sing 81 n n N07 C26 BX7 sing 82 n n C21 C19 BX7 sing 83 n n C28 C26 BX7 doub 84 n y C28 C30 BX7 sing 85 n y C26 N10 BX7 sing 86 n y C30 N11 BX7 doub 87 n y N10 C27 BX7 doub 88 n y N11 C27 BX7 sing 89 n y C27 N08 BX7 sing 90 n n C25 C24 BX7 doub 91 n y C25 C22 BX7 sing 92 n y C24 C20 BX7 sing 93 n y N08 C22 BX7 sing 94 n n C22 C18 BX7 doub 95 n y C20 C17 BX7 doub 96 n y C18 C17 BX7 sing 97 n y C17 N06 BX7 sing 98 n n O03 C16 BX7 doub 99 n n N06 C16 BX7 sing 100 n n C16 N05 BX7 sing 101 n n N05 C15 BX7 sing 102 n n N05 C14 BX7 sing 103 n n C15 C12 BX7 sing 104 n n C14 C13 BX7 sing 105 n n C12 C13 BX7 sing 106 n n N06 H1 BX7 sing 107 n n N07 H2 BX7 sing 108 n n N08 H3 BX7 sing 109 n n N09 H4 BX7 sing 110 n n C12 H5 BX7 sing 111 n n C12 H6 BX7 sing 112 n n C13 H7 BX7 sing 113 n n C13 H8 BX7 sing 114 n n C14 H9 BX7 sing 115 n n C14 H10 BX7 sing 116 n n C15 H11 BX7 sing 117 n n C15 H12 BX7 sing 118 n n C18 H13 BX7 sing 119 n n C19 H14 BX7 sing 120 n n C19 H15 BX7 sing 121 n n C20 H16 BX7 sing 122 n n C21 H17 BX7 sing 123 n n C21 H18 BX7 sing 124 n n C23 H19 BX7 sing 125 n n C23 H20 BX7 sing 126 n n C24 H21 BX7 sing 127 n n C25 H22 BX7 sing 128 n n C30 H23 BX7 sing 129 n n C32 H24 BX7 sing 130 n n C33 H25 BX7 sing 131 n n C34 H26 BX7 sing 132 n n # _atom_sites.entry_id 6O8B _atom_sites.fract_transf_matrix[1][1] 0.003989 _atom_sites.fract_transf_matrix[1][2] 0.002303 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BX7 A 1 701 1 BX7 BX7 . F 3 BX7 B 1 701 2 BX7 BX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I01 BX7 . . . E 3 -118.91 53.318 6.321 1 210.18 ? I01 BX7 701 A 1 HETATM 2 S S02 BX7 . . . E 3 -123.571 53.918 6.658 1 121.43 ? S02 BX7 701 A 1 HETATM 3 O O03 BX7 . . . E 3 -122.446 50.413 -2.634 1 148.26 ? O03 BX7 701 A 1 HETATM 4 O O04 BX7 . . . E 3 -125.577 53.008 3.531 1 156.21 ? O04 BX7 701 A 1 HETATM 5 N N05 BX7 . . . E 3 -124.389 51.321 -1.617 1 144.2 ? N05 BX7 701 A 1 HETATM 6 N N06 BX7 . . . E 3 -122.091 52.48 -1.507 1 141 ? N06 BX7 701 A 1 HETATM 7 N N07 BX7 . . . E 3 -120.849 53.354 3.637 1 106.08 ? N07 BX7 701 A 1 HETATM 8 N N08 BX7 . . . E 3 -117.42 52.711 0.147 1 49.53 ? N08 BX7 701 A 1 HETATM 9 N N09 BX7 . . . E 3 -123.496 52.211 4.075 1 108.54 ? N09 BX7 701 A 1 HETATM 10 N N10 BX7 . . . E 3 -119.059 53.031 2.019 1 46.32 ? N10 BX7 701 A 1 HETATM 11 N N11 BX7 . . . E 3 -116.795 52.803 2.561 1 65.5 ? N11 BX7 701 A 1 HETATM 12 C C12 BX7 . . . E 3 -126.289 50.075 -0.853 1 147.02 ? C12 BX7 701 A 1 HETATM 13 C C13 BX7 . . . E 3 -126.196 51.481 -0.121 1 145.69 ? C13 BX7 701 A 1 HETATM 14 C C14 BX7 . . . E 3 -125.04 52.274 -0.891 1 142.35 ? C14 BX7 701 A 1 HETATM 15 C C15 BX7 . . . E 3 -125.488 50.199 -1.997 1 149.18 ? C15 BX7 701 A 1 HETATM 16 C C16 BX7 . . . E 3 -122.941 51.33 -1.971 1 147.23 ? C16 BX7 701 A 1 HETATM 17 C C17 BX7 . . . E 3 -120.689 52.575 -1.804 1 97.07 ? C17 BX7 701 A 1 HETATM 18 C C18 BX7 . . . E 3 -119.772 52.599 -0.765 1 84.43 ? C18 BX7 701 A 1 HETATM 19 C C19 BX7 . . . E 3 -122.112 51.918 2.068 1 94.73 ? C19 BX7 701 A 1 HETATM 20 C C20 BX7 . . . E 3 -120.262 52.661 -3.106 1 83.73 ? C20 BX7 701 A 1 HETATM 21 C C21 BX7 . . . E 3 -121.801 53.366 2.558 1 76.95 ? C21 BX7 701 A 1 HETATM 22 C C22 BX7 . . . E 3 -118.393 52.702 -1.005 1 70.79 ? C22 BX7 701 A 1 HETATM 23 C C23 BX7 . . . E 3 -123.374 51.346 2.899 1 109.88 ? C23 BX7 701 A 1 HETATM 24 C C24 BX7 . . . E 3 -118.884 52.762 -3.372 1 76 ? C24 BX7 701 A 1 HETATM 25 C C25 BX7 . . . E 3 -117.979 52.784 -2.333 1 76.49 ? C25 BX7 701 A 1 HETATM 26 C C26 BX7 . . . E 3 -119.371 53.159 3.295 1 102.13 ? C26 BX7 701 A 1 HETATM 27 C C27 BX7 . . . E 3 -117.768 52.851 1.61 1 46.03 ? C27 BX7 701 A 1 HETATM 28 C C28 BX7 . . . E 3 -118.407 53.112 4.251 1 84.2 ? C28 BX7 701 A 1 HETATM 29 C C29 BX7 . . . E 3 -124.663 53.02 4.301 1 128.53 ? C29 BX7 701 A 1 HETATM 30 C C30 BX7 . . . E 3 -117.099 52.927 3.847 1 86.13 ? C30 BX7 701 A 1 HETATM 31 C C31 BX7 . . . E 3 -124.68 53.915 5.554 1 107.89 ? C31 BX7 701 A 1 HETATM 32 C C32 BX7 . . . E 3 -125.678 54.897 5.903 1 76.88 ? C32 BX7 701 A 1 HETATM 33 C C33 BX7 . . . E 3 -125.241 55.578 7.291 1 80.32 ? C33 BX7 701 A 1 HETATM 34 C C34 BX7 . . . E 3 -123.994 54.978 7.712 1 122.02 ? C34 BX7 701 A 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #