data_6O8B
#
_model_server_result.job_id            J_3YtYHO2VBwVQnTgYSkIg 
_model_server_result.datetime_utc      '2025-06-29 05:06:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    6O8B 
#
_exptl.entry_id    6O8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              591.468 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6O8B 
_cell.length_a            250.69 
_cell.length_b            250.69 
_cell.length_c            239.241 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C23 H26 I N7 O2 S' 
_chem_comp.formula_weight    591.468 
_chem_comp.id                BX7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C33 BX7 doub 70 n y 
C34 S02 BX7 sing 71 n y 
C33 C32 BX7 sing 72 n y 
S02 C31 BX7 sing 73 n y 
C32 C31 BX7 doub 74 n y 
C31 C29 BX7 sing 75 n n 
C29 O04 BX7 doub 76 n n 
C29 N09 BX7 sing 77 n n 
N09 C23 BX7 sing 78 n n 
I01 C28 BX7 sing 79 n n 
C23 C19 BX7 sing 80 n n 
N07 C21 BX7 sing 81 n n 
N07 C26 BX7 sing 82 n n 
C21 C19 BX7 sing 83 n n 
C28 C26 BX7 doub 84 n y 
C28 C30 BX7 sing 85 n y 
C26 N10 BX7 sing 86 n y 
C30 N11 BX7 doub 87 n y 
N10 C27 BX7 doub 88 n y 
N11 C27 BX7 sing 89 n y 
C27 N08 BX7 sing 90 n n 
C25 C24 BX7 doub 91 n y 
C25 C22 BX7 sing 92 n y 
C24 C20 BX7 sing 93 n y 
N08 C22 BX7 sing 94 n n 
C22 C18 BX7 doub 95 n y 
C20 C17 BX7 doub 96 n y 
C18 C17 BX7 sing 97 n y 
C17 N06 BX7 sing 98 n n 
O03 C16 BX7 doub 99 n n 
N06 C16 BX7 sing 100 n n 
C16 N05 BX7 sing 101 n n 
N05 C15 BX7 sing 102 n n 
N05 C14 BX7 sing 103 n n 
C15 C12 BX7 sing 104 n n 
C14 C13 BX7 sing 105 n n 
C12 C13 BX7 sing 106 n n 
N06 H1 BX7 sing 107 n n 
N07 H2 BX7 sing 108 n n 
N08 H3 BX7 sing 109 n n 
N09 H4 BX7 sing 110 n n 
C12 H5 BX7 sing 111 n n 
C12 H6 BX7 sing 112 n n 
C13 H7 BX7 sing 113 n n 
C13 H8 BX7 sing 114 n n 
C14 H9 BX7 sing 115 n n 
C14 H10 BX7 sing 116 n n 
C15 H11 BX7 sing 117 n n 
C15 H12 BX7 sing 118 n n 
C18 H13 BX7 sing 119 n n 
C19 H14 BX7 sing 120 n n 
C19 H15 BX7 sing 121 n n 
C20 H16 BX7 sing 122 n n 
C21 H17 BX7 sing 123 n n 
C21 H18 BX7 sing 124 n n 
C23 H19 BX7 sing 125 n n 
C23 H20 BX7 sing 126 n n 
C24 H21 BX7 sing 127 n n 
C25 H22 BX7 sing 128 n n 
C30 H23 BX7 sing 129 n n 
C32 H24 BX7 sing 130 n n 
C33 H25 BX7 sing 131 n n 
C34 H26 BX7 sing 132 n n 
#
_atom_sites.entry_id                     6O8B 
_atom_sites.fract_transf_matrix[1][1]    0.003989 
_atom_sites.fract_transf_matrix[1][2]    0.002303 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 BX7 A 1 701 1 BX7 BX7 . 
F 3 BX7 B 1 701 2 BX7 BX7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 I I01 BX7 . . . F 3 -115.25 56.008 -41.367 1 288.6 ? I01 BX7 701 B 1 
HETATM 2 S S02 BX7 . . . F 3 -112.324 59.268 -41.568 1 145.23 ? S02 BX7 701 B 1 
HETATM 3 O O03 BX7 . . . F 3 -111.719 57.762 -32.376 1 157.1 ? O03 BX7 701 B 1 
HETATM 4 O O04 BX7 . . . F 3 -108.965 59.069 -39.89 1 165.72 ? O04 BX7 701 B 1 
HETATM 5 N N05 BX7 . . . F 3 -109.804 57.152 -33.629 1 164.81 ? N05 BX7 701 B 1 
HETATM 6 N N06 BX7 . . . F 3 -111.942 55.755 -33.662 1 133.42 ? N06 BX7 701 B 1 
HETATM 7 N N07 BX7 . . . F 3 -113.527 56.691 -38.677 1 110.65 ? N07 BX7 701 B 1 
HETATM 8 N N08 BX7 . . . F 3 -116.366 54.417 -35.295 1 78.49 ? N08 BX7 701 B 1 
HETATM 9 N N09 BX7 . . . F 3 -110.9 58.321 -38.879 1 146.74 ? N09 BX7 701 B 1 
HETATM 10 N N10 BX7 . . . F 3 -115.004 55.532 -37.096 1 82.85 ? N10 BX7 701 B 1 
HETATM 11 N N11 BX7 . . . F 3 -116.953 54.397 -37.718 1 82.56 ? N11 BX7 701 B 1 
HETATM 12 C C12 BX7 . . . F 3 -107.556 58.108 -33.79 1 163.57 ? C12 BX7 701 B 1 
HETATM 13 C C13 BX7 . . . F 3 -107.8 57.018 -34.912 1 152.42 ? C13 BX7 701 B 1 
HETATM 14 C C14 BX7 . . . F 3 -109.168 56.311 -34.496 1 154.62 ? C14 BX7 701 B 1 
HETATM 15 C C15 BX7 . . . F 3 -108.813 58.368 -33.227 1 170.67 ? C15 BX7 701 B 1 
HETATM 16 C C16 BX7 . . . F 3 -111.2 56.959 -33.158 1 154.8 ? C16 BX7 701 B 1 
HETATM 17 C C17 BX7 . . . F 3 -113.296 55.432 -33.312 1 99.77 ? C17 BX7 701 B 1 
HETATM 18 C C18 BX7 . . . F 3 -114.157 55.102 -34.341 1 98.22 ? C18 BX7 701 B 1 
HETATM 19 C C19 BX7 . . . F 3 -111.517 56.629 -37.234 1 118.72 ? C19 BX7 701 B 1 
HETATM 20 C C20 BX7 . . . F 3 -113.747 55.432 -32.014 1 78.42 ? C20 BX7 701 B 1 
HETATM 21 C C21 BX7 . . . F 3 -112.854 57.346 -37.589 1 93.81 ? C21 BX7 701 B 1 
HETATM 22 C C22 BX7 . . . F 3 -115.497 54.772 -34.115 1 90.67 ? C22 BX7 701 B 1 
HETATM 23 C C23 BX7 . . . F 3 -110.303 57.523 -37.806 1 140.75 ? C23 BX7 701 B 1 
HETATM 24 C C24 BX7 . . . F 3 -115.097 55.098 -31.761 1 94.75 ? C24 BX7 701 B 1 
HETATM 25 C C25 BX7 . . . F 3 -115.951 54.773 -32.797 1 101.67 ? C25 BX7 701 B 1 
HETATM 26 C C26 BX7 . . . F 3 -114.774 55.864 -38.354 1 122.08 ? C26 BX7 701 B 1 
HETATM 27 C C27 BX7 . . . F 3 -116.099 54.792 -36.736 1 79.76 ? C27 BX7 701 B 1 
HETATM 28 C C28 BX7 . . . F 3 -115.625 55.471 -39.333 1 123.02 ? C28 BX7 701 B 1 
HETATM 29 C C29 BX7 . . . F 3 -110.162 59.048 -39.873 1 153.14 ? C29 BX7 701 B 1 
HETATM 30 C C30 BX7 . . . F 3 -116.728 54.721 -38.984 1 110.75 ? C30 BX7 701 B 1 
HETATM 31 C C31 BX7 . . . F 3 -111.009 59.812 -40.912 1 138.31 ? C31 BX7 701 B 1 
HETATM 32 C C32 BX7 . . . F 3 -110.763 61.133 -41.432 1 116.26 ? C32 BX7 701 B 1 
HETATM 33 C C33 BX7 . . . F 3 -111.935 61.486 -42.475 1 126.93 ? C33 BX7 701 B 1 
HETATM 34 C C34 BX7 . . . F 3 -112.846 60.364 -42.536 1 143.53 ? C34 BX7 701 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           34 
#