data_6O8M # _model_server_result.job_id 1Ni59Qu-gpKf5Z-vYkBJkg _model_server_result.datetime_utc '2024-10-19 17:39:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 6O8M # _exptl.entry_id 6O8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~1~,N~1~,N~2~,N~2~-tetramethylhydrazine-1,2-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O8M _cell.length_a 46.509 _cell.length_b 46.509 _cell.length_c 158.468 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 26.411333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 107 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N06 _struct_conn.ptnr2_label_comp_id LSY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LSY _struct_conn.ptnr2_auth_seq_id 200 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.642 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 N4 O2' _chem_comp.formula_weight 174.201 _chem_comp.id LSY _chem_comp.mon_nstd_flag . _chem_comp.name N~1~,N~1~,N~2~,N~2~-tetramethylhydrazine-1,2-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 N10 LSY sing 194 n n C12 N10 LSY sing 195 n n N10 C08 LSY sing 196 n n C08 O09 LSY doub 197 n n C08 N07 LSY sing 198 n n N07 N06 LSY sing 199 n n O05 C04 LSY doub 200 n n C04 N06 LSY sing 201 n n C04 N02 LSY sing 202 n n C03 N02 LSY sing 203 n n N02 C01 LSY sing 204 n n C01 H013 LSY sing 205 n n C01 H011 LSY sing 206 n n C01 H012 LSY sing 207 n n C03 H033 LSY sing 208 n n C03 H031 LSY sing 209 n n C03 H032 LSY sing 210 n n C11 H112 LSY sing 211 n n C11 H113 LSY sing 212 n n C11 H111 LSY sing 213 n n C12 H121 LSY sing 214 n n C12 H123 LSY sing 215 n n C12 H122 LSY sing 216 n n N06 H1 LSY sing 217 n n N07 H071 LSY sing 218 n n # _atom_sites.entry_id 6O8M _atom_sites.fract_transf_matrix[1][1] 0.021501 _atom_sites.fract_transf_matrix[1][2] 0.012414 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LSY A 1 200 200 LSY LIG . C 3 HOH A 1 301 20 HOH HOH . C 3 HOH A 2 302 85 HOH HOH . C 3 HOH A 3 303 42 HOH HOH . C 3 HOH A 4 304 61 HOH HOH . C 3 HOH A 5 305 23 HOH HOH . C 3 HOH A 6 306 31 HOH HOH . C 3 HOH A 7 307 5 HOH HOH . C 3 HOH A 8 308 26 HOH HOH . C 3 HOH A 9 309 19 HOH HOH . C 3 HOH A 10 310 3 HOH HOH . C 3 HOH A 11 311 51 HOH HOH . C 3 HOH A 12 312 22 HOH HOH . C 3 HOH A 13 313 62 HOH HOH . C 3 HOH A 14 314 8 HOH HOH . C 3 HOH A 15 315 80 HOH HOH . C 3 HOH A 16 316 14 HOH HOH . C 3 HOH A 17 317 4 HOH HOH . C 3 HOH A 18 318 17 HOH HOH . C 3 HOH A 19 319 1 HOH HOH . C 3 HOH A 20 320 46 HOH HOH . C 3 HOH A 21 321 13 HOH HOH . C 3 HOH A 22 322 29 HOH HOH . C 3 HOH A 23 323 65 HOH HOH . C 3 HOH A 24 324 25 HOH HOH . C 3 HOH A 25 325 21 HOH HOH . C 3 HOH A 26 326 10 HOH HOH . C 3 HOH A 27 327 16 HOH HOH . C 3 HOH A 28 328 68 HOH HOH . C 3 HOH A 29 329 27 HOH HOH . C 3 HOH A 30 330 6 HOH HOH . C 3 HOH A 31 331 15 HOH HOH . C 3 HOH A 32 332 72 HOH HOH . C 3 HOH A 33 333 7 HOH HOH . C 3 HOH A 34 334 30 HOH HOH . C 3 HOH A 35 335 9 HOH HOH . C 3 HOH A 36 336 11 HOH HOH . C 3 HOH A 37 337 47 HOH HOH . C 3 HOH A 38 338 53 HOH HOH . C 3 HOH A 39 339 2 HOH HOH . C 3 HOH A 40 340 41 HOH HOH . C 3 HOH A 41 341 38 HOH HOH . C 3 HOH A 42 342 58 HOH HOH . C 3 HOH A 43 343 12 HOH HOH . C 3 HOH A 44 344 52 HOH HOH . C 3 HOH A 45 345 73 HOH HOH . C 3 HOH A 46 346 63 HOH HOH . C 3 HOH A 47 347 28 HOH HOH . C 3 HOH A 48 348 49 HOH HOH . C 3 HOH A 49 349 37 HOH HOH . C 3 HOH A 50 350 43 HOH HOH . C 3 HOH A 51 351 55 HOH HOH . C 3 HOH A 52 352 57 HOH HOH . C 3 HOH A 53 353 39 HOH HOH . C 3 HOH A 54 354 77 HOH HOH . C 3 HOH A 55 355 34 HOH HOH . C 3 HOH A 56 356 45 HOH HOH . C 3 HOH A 57 357 48 HOH HOH . C 3 HOH A 58 358 82 HOH HOH . C 3 HOH A 59 359 70 HOH HOH . C 3 HOH A 60 360 44 HOH HOH . C 3 HOH A 61 361 69 HOH HOH . C 3 HOH A 62 362 81 HOH HOH . C 3 HOH A 63 363 64 HOH HOH . C 3 HOH A 64 364 54 HOH HOH . C 3 HOH A 65 365 84 HOH HOH . C 3 HOH A 66 366 60 HOH HOH . C 3 HOH A 67 367 33 HOH HOH . C 3 HOH A 68 368 24 HOH HOH . C 3 HOH A 69 369 83 HOH HOH . C 3 HOH A 70 370 79 HOH HOH . C 3 HOH A 71 371 32 HOH HOH . C 3 HOH A 72 372 18 HOH HOH . C 3 HOH A 73 373 86 HOH HOH . C 3 HOH A 74 374 40 HOH HOH . C 3 HOH A 75 375 59 HOH HOH . C 3 HOH A 76 376 74 HOH HOH . C 3 HOH A 77 377 50 HOH HOH . C 3 HOH A 78 378 67 HOH HOH . C 3 HOH A 79 379 36 HOH HOH . C 3 HOH A 80 380 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 LSY . . . B 2 34.145 29.732 5.041 1 37.43 ? C01 LSY 200 A 1 HETATM 2 C C03 LSY . . . B 2 36.033 29.006 3.565 1 37.56 ? C03 LSY 200 A 1 HETATM 3 C C04 LSY . . . B 2 33.719 29.062 2.638 1 35.72 ? C04 LSY 200 A 1 HETATM 4 C C08 LSY . . . B 2 31.14 30.274 0.979 1 45.13 ? C08 LSY 200 A 1 HETATM 5 C C11 LSY . . . B 2 30.116 28.999 -0.91 1 44.35 ? C11 LSY 200 A 1 HETATM 6 C C12 LSY . . . B 2 29.99 31.521 -0.837 1 49.97 ? C12 LSY 200 A 1 HETATM 7 N N02 LSY . . . B 2 34.623 29.272 3.748 1 33.67 ? N02 LSY 200 A 1 HETATM 8 N N06 LSY . . . B 2 32.265 29.237 2.796 1 31.02 ? N06 LSY 200 A 1 HETATM 9 N N07 LSY . . . B 2 31.565 29.064 1.581 1 37.68 ? N07 LSY 200 A 1 HETATM 10 N N10 LSY . . . B 2 30.416 30.261 -0.26 1 46.9 ? N10 LSY 200 A 1 HETATM 11 O O05 LSY . . . B 2 34.159 28.691 1.587 1 37.96 ? O05 LSY 200 A 1 HETATM 12 O O09 LSY . . . B 2 31.411 31.265 1.561 1 49.24 ? O09 LSY 200 A 1 HETATM 13 H H013 LSY . . . B 2 33.299 30.192 4.927 1 44.92 ? H013 LSY 200 A 1 HETATM 14 H H011 LSY . . . B 2 34.794 30.339 5.428 1 44.92 ? H011 LSY 200 A 1 HETATM 15 H H012 LSY . . . B 2 34.023 28.971 5.629 1 44.92 ? H012 LSY 200 A 1 HETATM 16 H H033 LSY . . . B 2 36.156 28.081 3.302 1 45.08 ? H033 LSY 200 A 1 HETATM 17 H H031 LSY . . . B 2 36.504 29.171 4.397 1 45.08 ? H031 LSY 200 A 1 HETATM 18 H H032 LSY . . . B 2 36.385 29.589 2.873 1 45.08 ? H032 LSY 200 A 1 HETATM 19 H H112 LSY . . . B 2 29.477 29.147 -1.625 1 53.22 ? H112 LSY 200 A 1 HETATM 20 H H113 LSY . . . B 2 29.74 28.382 -0.263 1 53.22 ? H113 LSY 200 A 1 HETATM 21 H H111 LSY . . . B 2 30.932 28.623 -1.278 1 53.22 ? H111 LSY 200 A 1 HETATM 22 H H121 LSY . . . B 2 29.311 31.356 -1.51 1 59.96 ? H121 LSY 200 A 1 HETATM 23 H H123 LSY . . . B 2 30.751 31.962 -1.247 1 59.96 ? H123 LSY 200 A 1 HETATM 24 H H122 LSY . . . B 2 29.625 32.089 -0.141 1 59.96 ? H122 LSY 200 A 1 HETATM 25 H H071 LSY . . . B 2 31.411 28.291 1.237 1 45.21 ? H071 LSY 200 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #