data_6O9B # _model_server_result.job_id JDQUZBFWnJZ4qn_ZObyVEA _model_server_result.datetime_utc '2024-11-14 20:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":310}' # _entry.id 6O9B # _exptl.entry_id 6O9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6O9B _cell.length_a 152.77 _cell.length_b 152.77 _cell.length_c 84.835 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 K N N ? 8 L N N ? 8 M N N ? 8 S N N ? 8 T N N ? 8 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 101 1_555 A SG CYS 167 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf2 A SG CYS 206 A CYS 203 1_555 A SG CYS 262 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 45 B CYS 45 1_555 B SG CYS 100 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6O9B _atom_sites.fract_transf_matrix[1][1] 0.006546 _atom_sites.fract_transf_matrix[1][2] 0.003779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PG4 A 1 301 2 PG4 PG4 . E 5 MES A 1 302 3 MES MES . F 6 IMD A 1 303 1 IMD IMD . G 6 IMD A 1 304 2 IMD IMD . H 7 PEG A 1 305 1 PEG PEG . I 7 PEG A 1 306 2 PEG PEG . J 8 EDO A 1 307 2 EDO EDO . K 8 EDO A 1 308 4 EDO EDO . L 8 EDO A 1 309 6 EDO EDO . M 8 EDO A 1 310 7 EDO EDO . N 4 PG4 B 1 201 1 PG4 PG4 . O 5 MES B 1 202 1 MES MES . P 5 MES B 1 203 2 MES MES . Q 7 PEG B 1 204 3 PEG PEG . R 7 PEG B 1 205 4 PEG PEG . S 8 EDO B 1 206 1 EDO EDO . T 8 EDO B 1 207 3 EDO EDO . U 8 EDO B 1 208 5 EDO EDO . V 9 HOH A 1 401 16 HOH HOH . V 9 HOH A 2 402 31 HOH HOH . V 9 HOH A 3 403 101 HOH HOH . V 9 HOH A 4 404 79 HOH HOH . V 9 HOH A 5 405 13 HOH HOH . V 9 HOH A 6 406 33 HOH HOH . V 9 HOH A 7 407 56 HOH HOH . V 9 HOH A 8 408 66 HOH HOH . V 9 HOH A 9 409 110 HOH HOH . V 9 HOH A 10 410 65 HOH HOH . V 9 HOH A 11 411 53 HOH HOH . V 9 HOH A 12 412 20 HOH HOH . V 9 HOH A 13 413 144 HOH HOH . V 9 HOH A 14 414 64 HOH HOH . V 9 HOH A 15 415 28 HOH HOH . V 9 HOH A 16 416 17 HOH HOH . V 9 HOH A 17 417 123 HOH HOH . V 9 HOH A 18 418 85 HOH HOH . V 9 HOH A 19 419 118 HOH HOH . V 9 HOH A 20 420 29 HOH HOH . V 9 HOH A 21 421 14 HOH HOH . V 9 HOH A 22 422 54 HOH HOH . V 9 HOH A 23 423 6 HOH HOH . V 9 HOH A 24 424 146 HOH HOH . V 9 HOH A 25 425 130 HOH HOH . V 9 HOH A 26 426 5 HOH HOH . V 9 HOH A 27 427 125 HOH HOH . V 9 HOH A 28 428 27 HOH HOH . V 9 HOH A 29 429 11 HOH HOH . V 9 HOH A 30 430 76 HOH HOH . V 9 HOH A 31 431 34 HOH HOH . V 9 HOH A 32 432 47 HOH HOH . V 9 HOH A 33 433 82 HOH HOH . V 9 HOH A 34 434 113 HOH HOH . V 9 HOH A 35 435 93 HOH HOH . V 9 HOH A 36 436 8 HOH HOH . V 9 HOH A 37 437 134 HOH HOH . V 9 HOH A 38 438 150 HOH HOH . V 9 HOH A 39 439 26 HOH HOH . V 9 HOH A 40 440 32 HOH HOH . V 9 HOH A 41 441 108 HOH HOH . V 9 HOH A 42 442 103 HOH HOH . V 9 HOH A 43 443 4 HOH HOH . V 9 HOH A 44 444 116 HOH HOH . V 9 HOH A 45 445 91 HOH HOH . V 9 HOH A 46 446 133 HOH HOH . V 9 HOH A 47 447 35 HOH HOH . V 9 HOH A 48 448 143 HOH HOH . V 9 HOH A 49 449 7 HOH HOH . V 9 HOH A 50 450 59 HOH HOH . V 9 HOH A 51 451 78 HOH HOH . V 9 HOH A 52 452 18 HOH HOH . V 9 HOH A 53 453 98 HOH HOH . V 9 HOH A 54 454 61 HOH HOH . V 9 HOH A 55 455 104 HOH HOH . V 9 HOH A 56 456 94 HOH HOH . V 9 HOH A 57 457 138 HOH HOH . V 9 HOH A 58 458 126 HOH HOH . V 9 HOH A 59 459 120 HOH HOH . V 9 HOH A 60 460 25 HOH HOH . V 9 HOH A 61 461 1 HOH HOH . V 9 HOH A 62 462 9 HOH HOH . V 9 HOH A 63 463 75 HOH HOH . V 9 HOH A 64 464 122 HOH HOH . V 9 HOH A 65 465 142 HOH HOH . V 9 HOH A 66 466 87 HOH HOH . V 9 HOH A 67 467 109 HOH HOH . V 9 HOH A 68 468 48 HOH HOH . V 9 HOH A 69 469 52 HOH HOH . V 9 HOH A 70 470 84 HOH HOH . V 9 HOH A 71 471 67 HOH HOH . V 9 HOH A 72 472 23 HOH HOH . V 9 HOH A 73 473 137 HOH HOH . V 9 HOH A 74 474 57 HOH HOH . V 9 HOH A 75 475 141 HOH HOH . V 9 HOH A 76 476 153 HOH HOH . V 9 HOH A 77 477 121 HOH HOH . V 9 HOH A 78 478 157 HOH HOH . V 9 HOH A 79 479 81 HOH HOH . V 9 HOH A 80 480 51 HOH HOH . V 9 HOH A 81 481 107 HOH HOH . V 9 HOH A 82 482 99 HOH HOH . V 9 HOH A 83 483 58 HOH HOH . V 9 HOH A 84 484 73 HOH HOH . V 9 HOH A 85 485 148 HOH HOH . V 9 HOH A 86 486 2 HOH HOH . V 9 HOH A 87 487 96 HOH HOH . V 9 HOH A 88 488 50 HOH HOH . V 9 HOH A 89 489 117 HOH HOH . V 9 HOH A 90 490 156 HOH HOH . V 9 HOH A 91 491 132 HOH HOH . V 9 HOH A 92 492 62 HOH HOH . V 9 HOH A 93 493 145 HOH HOH . V 9 HOH A 94 494 89 HOH HOH . V 9 HOH A 95 495 139 HOH HOH . V 9 HOH A 96 496 49 HOH HOH . V 9 HOH A 97 497 10 HOH HOH . V 9 HOH A 98 498 115 HOH HOH . V 9 HOH A 99 499 46 HOH HOH . V 9 HOH A 100 500 119 HOH HOH . V 9 HOH A 101 501 149 HOH HOH . V 9 HOH A 102 502 30 HOH HOH . V 9 HOH A 103 503 166 HOH HOH . V 9 HOH A 104 504 60 HOH HOH . V 9 HOH A 105 505 95 HOH HOH . V 9 HOH A 106 506 74 HOH HOH . V 9 HOH A 107 507 131 HOH HOH . V 9 HOH A 108 508 22 HOH HOH . V 9 HOH A 109 509 19 HOH HOH . V 9 HOH A 110 510 21 HOH HOH . V 9 HOH A 111 511 129 HOH HOH . V 9 HOH A 112 512 69 HOH HOH . V 9 HOH A 113 513 162 HOH HOH . V 9 HOH A 114 514 152 HOH HOH . V 9 HOH A 115 515 24 HOH HOH . V 9 HOH A 116 516 158 HOH HOH . V 9 HOH A 117 517 71 HOH HOH . W 9 HOH B 1 301 36 HOH HOH . W 9 HOH B 2 302 42 HOH HOH . W 9 HOH B 3 303 45 HOH HOH . W 9 HOH B 4 304 43 HOH HOH . W 9 HOH B 5 305 140 HOH HOH . W 9 HOH B 6 306 90 HOH HOH . W 9 HOH B 7 307 92 HOH HOH . W 9 HOH B 8 308 77 HOH HOH . W 9 HOH B 9 309 80 HOH HOH . W 9 HOH B 10 310 147 HOH HOH . W 9 HOH B 11 311 86 HOH HOH . W 9 HOH B 12 312 124 HOH HOH . W 9 HOH B 13 313 136 HOH HOH . W 9 HOH B 14 314 37 HOH HOH . W 9 HOH B 15 315 135 HOH HOH . W 9 HOH B 16 316 44 HOH HOH . W 9 HOH B 17 317 106 HOH HOH . W 9 HOH B 18 318 97 HOH HOH . W 9 HOH B 19 319 151 HOH HOH . W 9 HOH B 20 320 41 HOH HOH . W 9 HOH B 21 321 83 HOH HOH . W 9 HOH B 22 322 70 HOH HOH . W 9 HOH B 23 323 105 HOH HOH . W 9 HOH B 24 324 68 HOH HOH . W 9 HOH B 25 325 63 HOH HOH . W 9 HOH B 26 326 39 HOH HOH . W 9 HOH B 27 327 40 HOH HOH . W 9 HOH B 28 328 12 HOH HOH . W 9 HOH B 29 329 111 HOH HOH . W 9 HOH B 30 330 72 HOH HOH . W 9 HOH B 31 331 38 HOH HOH . W 9 HOH B 32 332 15 HOH HOH . W 9 HOH B 33 333 55 HOH HOH . W 9 HOH B 34 334 154 HOH HOH . W 9 HOH B 35 335 88 HOH HOH . W 9 HOH B 36 336 114 HOH HOH . W 9 HOH B 37 337 100 HOH HOH . W 9 HOH B 38 338 159 HOH HOH . W 9 HOH B 39 339 160 HOH HOH . W 9 HOH B 40 340 165 HOH HOH . W 9 HOH B 41 341 164 HOH HOH . W 9 HOH B 42 342 161 HOH HOH . W 9 HOH B 43 343 163 HOH HOH . X 9 HOH C 1 101 112 HOH HOH . X 9 HOH C 2 102 3 HOH HOH . X 9 HOH C 3 103 155 HOH HOH . X 9 HOH C 4 104 127 HOH HOH . X 9 HOH C 5 105 128 HOH HOH . X 9 HOH C 6 106 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 8 37.438 46.587 7.006 1 58.62 ? C1 EDO 310 A 1 HETATM 2 O O1 EDO . . . M 8 38.346 45.685 7.627 1 60.55 ? O1 EDO 310 A 1 HETATM 3 C C2 EDO . . . M 8 38.25 47.679 6.387 1 69.29 ? C2 EDO 310 A 1 HETATM 4 O O2 EDO . . . M 8 37.798 48.973 6.737 1 74.38 ? O2 EDO 310 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #