data_6O9G
#
_model_server_result.job_id            iqiv9dW_E7Ld81TNf0oIxQ 
_model_server_result.datetime_utc      '2024-11-02 20:25:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o9g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1303}' 
#
_entry.id    6O9G 
#
_exptl.entry_id    6O9G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              636.787 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~1~-{5-[(3-{[3-(L-arginylamino)propyl]amino}propyl)amino]pentyl}-N~2~-[(2,4-dihydroxyphenyl)acetyl]-L-aspartamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6O9G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O9G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 858 A CYS 1039 1_555 A SG CYS 886 A CYS 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 A SG CYS 885 A CYS 1066 1_555 A SG CYS 895 A CYS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 B SG CYS 858 B CYS 1039 1_555 B SG CYS 886 B CYS 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 B SG CYS 885 B CYS 1066 1_555 B SG CYS 895 B CYS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf10 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf11 C SG CYS 858 C CYS 1039 1_555 C SG CYS 886 C CYS 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf12 C SG CYS 885 C CYS 1066 1_555 C SG CYS 895 C CYS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf13 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf14 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 D SG CYS 858 D CYS 1039 1_555 D SG CYS 886 D CYS 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf16 D SG CYS 885 D CYS 1066 1_555 D SG CYS 895 D CYS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C29 H52 N10 O6' 
_chem_comp.formula_weight    636.787 
_chem_comp.id                LU7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~1~-{5-[(3-{[3-(L-arginylamino)propyl]amino}propyl)amino]pentyl}-N~2~-[(2,4-dihydroxyphenyl)acetyl]-L-aspartamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Argiotoxin 636' 
#
_atom_sites.entry_id                     6O9G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GLU A 1 1301 1301 GLU GLU . 
F 3 CYZ A 1 1302 1302 CYZ CYZ . 
G 2 GLU B 1 1301 1301 GLU GLU . 
H 3 CYZ B 1 1302 1302 CYZ CYZ . 
I 2 GLU C 1 1301 1301 GLU GLU . 
J 3 CYZ C 1 1302 1302 CYZ CYZ . 
K 2 GLU D 1 1301 1301 GLU GLU . 
L 3 CYZ D 1 1302 1302 CYZ CYZ . 
M 4 LU7 D 1 1303 1 LU7 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAH LU7 . . . M 4 161.234 159.868 113.679 1 20 ? OAH LU7 1303 D 1 
HETATM 2 C CAD LU7 . . . M 4 161.636 161.198 113.847 1 20 ? CAD LU7 1303 D 1 
HETATM 3 C CAE LU7 . . . M 4 162.156 161.617 115.06 1 20 ? CAE LU7 1303 D 1 
HETATM 4 C CAF LU7 . . . M 4 162.553 162.933 115.226 1 20 ? CAF LU7 1303 D 1 
HETATM 5 O OAG LU7 . . . M 4 163.079 163.356 116.454 1 20 ? OAG LU7 1303 D 1 
HETATM 6 C CAA LU7 . . . M 4 162.431 163.831 114.179 1 20 ? CAA LU7 1303 D 1 
HETATM 7 C CAB LU7 . . . M 4 161.911 163.413 112.965 1 20 ? CAB LU7 1303 D 1 
HETATM 8 C CAC LU7 . . . M 4 161.513 162.096 112.799 1 20 ? CAC LU7 1303 D 1 
HETATM 9 C CAI LU7 . . . M 4 160.938 161.634 111.46 1 20 ? CAI LU7 1303 D 1 
HETATM 10 C CAJ LU7 . . . M 4 161.812 162.045 110.275 1 20 ? CAJ LU7 1303 D 1 
HETATM 11 O OAK LU7 . . . M 4 162.779 162.706 110.452 1 20 ? OAK LU7 1303 D 1 
HETATM 12 N N LU7 . . . M 4 161.451 161.623 108.931 1 20 ? N LU7 1303 D 1 
HETATM 13 C CA LU7 . . . M 4 162.274 162.008 107.797 1 20 ? CA LU7 1303 D 1 
HETATM 14 C CB LU7 . . . M 4 163.657 161.374 107.931 1 20 ? CB LU7 1303 D 1 
HETATM 15 C CG LU7 . . . M 4 163.917 160.466 109.132 1 20 ? CG LU7 1303 D 1 
HETATM 16 O OD1 LU7 . . . M 4 163.589 159.328 109.096 1 20 ? OD1 LU7 1303 D 1 
HETATM 17 N ND2 LU7 . . . M 4 164.567 160.997 110.318 1 20 ? ND2 LU7 1303 D 1 
HETATM 18 C C LU7 . . . M 4 161.618 161.524 106.505 1 20 ? C LU7 1303 D 1 
HETATM 19 O O LU7 . . . M 4 160.72 160.754 106.549 1 20 ? O LU7 1303 D 1 
HETATM 20 N NAT LU7 . . . M 4 162.095 162.006 105.222 1 20 ? NAT LU7 1303 D 1 
HETATM 21 C CAU LU7 . . . M 4 161.467 161.542 103.998 1 20 ? CAU LU7 1303 D 1 
HETATM 22 C CAV LU7 . . . M 4 162.178 162.12 102.776 1 20 ? CAV LU7 1303 D 1 
HETATM 23 C CAW LU7 . . . M 4 161.415 161.839 101.482 1 20 ? CAW LU7 1303 D 1 
HETATM 24 C CAX LU7 . . . M 4 162.208 162.231 100.236 1 20 ? CAX LU7 1303 D 1 
HETATM 25 C CAY LU7 . . . M 4 161.598 161.652 98.96 1 20 ? CAY LU7 1303 D 1 
HETATM 26 N NAZ LU7 . . . M 4 162.068 162.377 97.792 1 20 ? NAZ LU7 1303 D 1 
HETATM 27 C CBA LU7 . . . M 4 161.754 161.612 96.597 1 20 ? CBA LU7 1303 D 1 
HETATM 28 C CBB LU7 . . . M 4 161.724 162.519 95.369 1 20 ? CBB LU7 1303 D 1 
HETATM 29 C CBC LU7 . . . M 4 162.058 161.761 94.088 1 20 ? CBC LU7 1303 D 1 
HETATM 30 N NBD LU7 . . . M 4 161.355 162.336 92.955 1 20 ? NBD LU7 1303 D 1 
HETATM 31 C CBE LU7 . . . M 4 162.11 162.079 91.742 1 20 ? CBE LU7 1303 D 1 
HETATM 32 C CBF LU7 . . . M 4 161.183 162.069 90.527 1 20 ? CBF LU7 1303 D 1 
HETATM 33 C CBG LU7 . . . M 4 161.928 162.408 89.237 1 20 ? CBG LU7 1303 D 1 
HETATM 34 N NBH LU7 . . . M 4 161.229 161.865 88.086 1 20 ? NBH LU7 1303 D 1 
HETATM 35 C CBI LU7 . . . M 4 161.611 162.281 86.748 1 20 ? CBI LU7 1303 D 1 
HETATM 36 O OBJ LU7 . . . M 4 162.49 163.061 86.6 1 20 ? OBJ LU7 1303 D 1 
HETATM 37 C CBK LU7 . . . M 4 160.883 161.715 85.531 1 20 ? CBK LU7 1303 D 1 
HETATM 38 N NBS LU7 . . . M 4 159.5 162.154 85.544 1 20 ? NBS LU7 1303 D 1 
HETATM 39 C CBL LU7 . . . M 4 161.566 162.217 84.261 1 20 ? CBL LU7 1303 D 1 
HETATM 40 C CBM LU7 . . . M 4 161.024 161.543 83.002 1 20 ? CBM LU7 1303 D 1 
HETATM 41 C CBN LU7 . . . M 4 161.531 162.214 81.727 1 20 ? CBN LU7 1303 D 1 
HETATM 42 N NBO LU7 . . . M 4 161.577 161.259 80.636 1 20 ? NBO LU7 1303 D 1 
HETATM 43 C CBP LU7 . . . M 4 161.454 161.719 79.264 1 20 ? CBP LU7 1303 D 1 
HETATM 44 N NBR LU7 . . . M 4 161.309 162.94 79.024 1 20 ? NBR LU7 1303 D 1 
HETATM 45 N NBQ LU7 . . . M 4 161.494 160.896 78.322 1 20 ? NBQ LU7 1303 D 1 
HETATM 46 H HAH1 LU7 . . . M 4 161.207 159.482 114.436 1 20 ? HAH1 LU7 1303 D 1 
HETATM 47 H HAE1 LU7 . . . M 4 162.238 161.014 115.763 1 20 ? HAE1 LU7 1303 D 1 
HETATM 48 H HAG1 LU7 . . . M 4 162.578 163.086 117.085 1 20 ? HAG1 LU7 1303 D 1 
HETATM 49 H HAA1 LU7 . . . M 4 162.698 164.715 114.291 1 20 ? HAA1 LU7 1303 D 1 
HETATM 50 H HAB1 LU7 . . . M 4 161.828 164.015 112.262 1 20 ? HAB1 LU7 1303 D 1 
HETATM 51 H HAI1 LU7 . . . M 4 160.858 160.667 111.469 1 20 ? HAI1 LU7 1303 D 1 
HETATM 52 H HAI2 LU7 . . . M 4 160.056 162.021 111.347 1 20 ? HAI2 LU7 1303 D 1 
HETATM 53 H H LU7 . . . M 4 160.749 161.143 108.807 1 20 ? H LU7 1303 D 1 
HETATM 54 H HA LU7 . . . M 4 162.361 162.974 107.774 1 20 ? HA LU7 1303 D 1 
HETATM 55 H HB2 LU7 . . . M 4 164.308 162.093 107.958 1 20 ? HB2 LU7 1303 D 1 
HETATM 56 H HB3 LU7 . . . M 4 163.82 160.854 107.129 1 20 ? HB3 LU7 1303 D 1 
HETATM 57 H HD23 LU7 . . . M 4 164.806 161.823 110.345 1 20 ? HD23 LU7 1303 D 1 
HETATM 58 H HD22 LU7 . . . M 4 164.713 160.486 110.994 1 20 ? HD22 LU7 1303 D 1 
HETATM 59 H HAT1 LU7 . . . M 4 162.747 162.565 105.187 1 20 ? HAT1 LU7 1303 D 1 
HETATM 60 H HAU1 LU7 . . . M 4 161.509 160.574 103.964 1 20 ? HAU1 LU7 1303 D 1 
HETATM 61 H HAU2 LU7 . . . M 4 160.538 161.822 103.989 1 20 ? HAU2 LU7 1303 D 1 
HETATM 62 H HAV1 LU7 . . . M 4 162.266 163.079 102.887 1 20 ? HAV1 LU7 1303 D 1 
HETATM 63 H HAV2 LU7 . . . M 4 163.063 161.727 102.711 1 20 ? HAV2 LU7 1303 D 1 
HETATM 64 H HAW1 LU7 . . . M 4 161.211 160.891 101.438 1 20 ? HAW1 LU7 1303 D 1 
HETATM 65 H HAW2 LU7 . . . M 4 160.583 162.338 101.494 1 20 ? HAW2 LU7 1303 D 1 
HETATM 66 H HAX2 LU7 . . . M 4 162.226 163.198 100.166 1 20 ? HAX2 LU7 1303 D 1 
HETATM 67 H HAX1 LU7 . . . M 4 163.117 161.905 100.327 1 20 ? HAX1 LU7 1303 D 1 
HETATM 68 H HAY2 LU7 . . . M 4 161.851 160.719 98.88 1 20 ? HAY2 LU7 1303 D 1 
HETATM 69 H HAY1 LU7 . . . M 4 160.632 161.718 99.01 1 20 ? HAY1 LU7 1303 D 1 
HETATM 70 H HBA2 LU7 . . . M 4 162.428 160.926 96.471 1 20 ? HBA2 LU7 1303 D 1 
HETATM 71 H HBA1 LU7 . . . M 4 160.887 161.192 96.705 1 20 ? HBA1 LU7 1303 D 1 
HETATM 72 H HBB1 LU7 . . . M 4 160.838 162.906 95.285 1 20 ? HBB1 LU7 1303 D 1 
HETATM 73 H HBB2 LU7 . . . M 4 162.369 163.234 95.49 1 20 ? HBB2 LU7 1303 D 1 
HETATM 74 H HBC1 LU7 . . . M 4 163.014 161.808 93.928 1 20 ? HBC1 LU7 1303 D 1 
HETATM 75 H HBC2 LU7 . . . M 4 161.796 160.832 94.189 1 20 ? HBC2 LU7 1303 D 1 
HETATM 76 H HBE2 LU7 . . . M 4 162.779 162.772 91.628 1 20 ? HBE2 LU7 1303 D 1 
HETATM 77 H HBE1 LU7 . . . M 4 162.55 161.218 91.815 1 20 ? HBE1 LU7 1303 D 1 
HETATM 78 H HBF1 LU7 . . . M 4 160.787 161.188 90.44 1 20 ? HBF1 LU7 1303 D 1 
HETATM 79 H HBF2 LU7 . . . M 4 160.478 162.72 90.664 1 20 ? HBF2 LU7 1303 D 1 
HETATM 80 H HBG1 LU7 . . . M 4 161.99 163.372 89.147 1 20 ? HBG1 LU7 1303 D 1 
HETATM 81 H HBG2 LU7 . . . M 4 162.821 162.033 89.275 1 20 ? HBG2 LU7 1303 D 1 
HETATM 82 H HBH1 LU7 . . . M 4 160.591 161.299 88.196 1 20 ? HBH1 LU7 1303 D 1 
HETATM 83 H HBK1 LU7 . . . M 4 160.916 160.746 85.556 1 20 ? HBK1 LU7 1303 D 1 
HETATM 84 H HBS2 LU7 . . . M 4 159.008 161.597 85.054 1 20 ? HBS2 LU7 1303 D 1 
HETATM 85 H HBL2 LU7 . . . M 4 161.428 163.174 84.188 1 20 ? HBL2 LU7 1303 D 1 
HETATM 86 H HBL1 LU7 . . . M 4 162.518 162.04 84.326 1 20 ? HBL1 LU7 1303 D 1 
HETATM 87 H HBM2 LU7 . . . M 4 161.299 160.613 82.999 1 20 ? HBM2 LU7 1303 D 1 
HETATM 88 H HBM1 LU7 . . . M 4 160.055 161.584 83.015 1 20 ? HBM1 LU7 1303 D 1 
HETATM 89 H HBN2 LU7 . . . M 4 160.936 162.943 81.49 1 20 ? HBN2 LU7 1303 D 1 
HETATM 90 H HBN1 LU7 . . . M 4 162.422 162.566 81.883 1 20 ? HBN1 LU7 1303 D 1 
HETATM 91 H HBO1 LU7 . . . M 4 161.677 160.421 80.802 1 20 ? HBO1 LU7 1303 D 1 
HETATM 92 H HBR2 LU7 . . . M 4 161.282 163.506 79.671 1 20 ? HBR2 LU7 1303 D 1 
HETATM 93 H HBQ1 LU7 . . . M 4 161.418 161.177 77.481 1 20 ? HBQ1 LU7 1303 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           93 
#