data_6O9I
#
_model_server_result.job_id            dGVhukbUpDe8c2nBNGiR_g 
_model_server_result.datetime_utc      '2024-11-30 21:49:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6o9i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    6O9I 
#
_exptl.entry_id    6O9I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         87.86 
_cell.angle_beta          88.38 
_cell.angle_gamma         81.17 
_cell.entry_id            6O9I 
_cell.length_a            41.43 
_cell.length_b            43.68 
_cell.length_c            133.82 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6O9I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 140 B CYS 140 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 C SG CYS 45 C CYS 17 1_555 C SG CYS 69 C CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 60 C CYS 32 1_555 C SG CYS 102 C CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 83 C CYS 55 1_555 C SG CYS 117 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 D SG CYS 146 D CYS 146 1_555 D SG CYS 201 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf10 E SG CYS 23 E CYS 23 1_555 E SG CYS 93 E CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 E SG CYS 140 E CYS 140 1_555 E SG CYS 200 E CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 D C PCA 1 D PCA 1 1_555 D N VAL 2 D VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6O9I 
_atom_sites.fract_transf_matrix[1][1]    0.024137 
_atom_sites.fract_transf_matrix[1][2]    -0.00375 
_atom_sites.fract_transf_matrix[1][3]    -0.000558 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023168 
_atom_sites.fract_transf_matrix[2][3]    -0.000776 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 EDO A 1 301 3 EDO EDO . 
G 6 EDO B 1 301 1 EDO EDO . 
H 6 EDO D 1 301 4 EDO EDO . 
I 6 EDO D 1 302 5 EDO EDO . 
J 6 EDO E 1 301 2 EDO EDO . 
K 7 HOH A 1 401 151 HOH HOH . 
K 7 HOH A 2 402 206 HOH HOH . 
K 7 HOH A 3 403 130 HOH HOH . 
K 7 HOH A 4 404 114 HOH HOH . 
K 7 HOH A 5 405 143 HOH HOH . 
K 7 HOH A 6 406 136 HOH HOH . 
K 7 HOH A 7 407 55 HOH HOH . 
K 7 HOH A 8 408 26 HOH HOH . 
K 7 HOH A 9 409 23 HOH HOH . 
K 7 HOH A 10 410 34 HOH HOH . 
K 7 HOH A 11 411 209 HOH HOH . 
K 7 HOH A 12 412 105 HOH HOH . 
K 7 HOH A 13 413 215 HOH HOH . 
K 7 HOH A 14 414 8 HOH HOH . 
K 7 HOH A 15 415 46 HOH HOH . 
K 7 HOH A 16 416 197 HOH HOH . 
K 7 HOH A 17 417 43 HOH HOH . 
K 7 HOH A 18 418 92 HOH HOH . 
K 7 HOH A 19 419 36 HOH HOH . 
K 7 HOH A 20 420 188 HOH HOH . 
K 7 HOH A 21 421 90 HOH HOH . 
K 7 HOH A 22 422 39 HOH HOH . 
K 7 HOH A 23 423 42 HOH HOH . 
K 7 HOH A 24 424 64 HOH HOH . 
K 7 HOH A 25 425 47 HOH HOH . 
K 7 HOH A 26 426 194 HOH HOH . 
K 7 HOH A 27 427 37 HOH HOH . 
K 7 HOH A 28 428 158 HOH HOH . 
K 7 HOH A 29 429 12 HOH HOH . 
K 7 HOH A 30 430 40 HOH HOH . 
K 7 HOH A 31 431 38 HOH HOH . 
K 7 HOH A 32 432 138 HOH HOH . 
K 7 HOH A 33 433 5 HOH HOH . 
K 7 HOH A 34 434 106 HOH HOH . 
K 7 HOH A 35 435 95 HOH HOH . 
K 7 HOH A 36 436 83 HOH HOH . 
K 7 HOH A 37 437 142 HOH HOH . 
K 7 HOH A 38 438 27 HOH HOH . 
K 7 HOH A 39 439 160 HOH HOH . 
K 7 HOH A 40 440 187 HOH HOH . 
K 7 HOH A 41 441 21 HOH HOH . 
K 7 HOH A 42 442 13 HOH HOH . 
K 7 HOH A 43 443 139 HOH HOH . 
K 7 HOH A 44 444 9 HOH HOH . 
K 7 HOH A 45 445 29 HOH HOH . 
K 7 HOH A 46 446 171 HOH HOH . 
K 7 HOH A 47 447 52 HOH HOH . 
K 7 HOH A 48 448 16 HOH HOH . 
K 7 HOH A 49 449 145 HOH HOH . 
K 7 HOH A 50 450 129 HOH HOH . 
K 7 HOH A 51 451 96 HOH HOH . 
K 7 HOH A 52 452 186 HOH HOH . 
K 7 HOH A 53 453 112 HOH HOH . 
K 7 HOH A 54 454 185 HOH HOH . 
K 7 HOH A 55 455 98 HOH HOH . 
K 7 HOH A 56 456 107 HOH HOH . 
K 7 HOH A 57 457 11 HOH HOH . 
K 7 HOH A 58 458 177 HOH HOH . 
K 7 HOH A 59 459 120 HOH HOH . 
K 7 HOH A 60 460 176 HOH HOH . 
K 7 HOH A 61 461 148 HOH HOH . 
K 7 HOH A 62 462 108 HOH HOH . 
K 7 HOH A 63 463 44 HOH HOH . 
K 7 HOH A 64 464 141 HOH HOH . 
K 7 HOH A 65 465 181 HOH HOH . 
K 7 HOH A 66 466 169 HOH HOH . 
K 7 HOH A 67 467 60 HOH HOH . 
K 7 HOH A 68 468 119 HOH HOH . 
K 7 HOH A 69 469 216 HOH HOH . 
K 7 HOH A 70 470 31 HOH HOH . 
K 7 HOH A 71 471 163 HOH HOH . 
L 7 HOH B 1 401 123 HOH HOH . 
L 7 HOH B 2 402 200 HOH HOH . 
L 7 HOH B 3 403 7 HOH HOH . 
L 7 HOH B 4 404 30 HOH HOH . 
L 7 HOH B 5 405 131 HOH HOH . 
L 7 HOH B 6 406 65 HOH HOH . 
L 7 HOH B 7 407 122 HOH HOH . 
L 7 HOH B 8 408 22 HOH HOH . 
L 7 HOH B 9 409 25 HOH HOH . 
L 7 HOH B 10 410 167 HOH HOH . 
L 7 HOH B 11 411 2 HOH HOH . 
L 7 HOH B 12 412 81 HOH HOH . 
L 7 HOH B 13 413 3 HOH HOH . 
L 7 HOH B 14 414 69 HOH HOH . 
L 7 HOH B 15 415 4 HOH HOH . 
L 7 HOH B 16 416 104 HOH HOH . 
L 7 HOH B 17 417 66 HOH HOH . 
L 7 HOH B 18 418 161 HOH HOH . 
L 7 HOH B 19 419 49 HOH HOH . 
L 7 HOH B 20 420 59 HOH HOH . 
L 7 HOH B 21 421 51 HOH HOH . 
L 7 HOH B 22 422 75 HOH HOH . 
L 7 HOH B 23 423 18 HOH HOH . 
L 7 HOH B 24 424 6 HOH HOH . 
L 7 HOH B 25 425 180 HOH HOH . 
L 7 HOH B 26 426 85 HOH HOH . 
L 7 HOH B 27 427 102 HOH HOH . 
L 7 HOH B 28 428 35 HOH HOH . 
L 7 HOH B 29 429 68 HOH HOH . 
L 7 HOH B 30 430 208 HOH HOH . 
L 7 HOH B 31 431 134 HOH HOH . 
L 7 HOH B 32 432 28 HOH HOH . 
L 7 HOH B 33 433 150 HOH HOH . 
L 7 HOH B 34 434 56 HOH HOH . 
L 7 HOH B 35 435 110 HOH HOH . 
L 7 HOH B 36 436 203 HOH HOH . 
L 7 HOH B 37 437 72 HOH HOH . 
L 7 HOH B 38 438 93 HOH HOH . 
L 7 HOH B 39 439 73 HOH HOH . 
L 7 HOH B 40 440 135 HOH HOH . 
L 7 HOH B 41 441 164 HOH HOH . 
L 7 HOH B 42 442 32 HOH HOH . 
L 7 HOH B 43 443 97 HOH HOH . 
L 7 HOH B 44 444 10 HOH HOH . 
L 7 HOH B 45 445 201 HOH HOH . 
L 7 HOH B 46 446 58 HOH HOH . 
L 7 HOH B 47 447 20 HOH HOH . 
L 7 HOH B 48 448 24 HOH HOH . 
L 7 HOH B 49 449 126 HOH HOH . 
L 7 HOH B 50 450 14 HOH HOH . 
L 7 HOH B 51 451 168 HOH HOH . 
L 7 HOH B 52 452 17 HOH HOH . 
L 7 HOH B 53 453 71 HOH HOH . 
L 7 HOH B 54 454 41 HOH HOH . 
L 7 HOH B 55 455 133 HOH HOH . 
L 7 HOH B 56 456 132 HOH HOH . 
L 7 HOH B 57 457 159 HOH HOH . 
L 7 HOH B 58 458 174 HOH HOH . 
L 7 HOH B 59 459 149 HOH HOH . 
L 7 HOH B 60 460 91 HOH HOH . 
L 7 HOH B 61 461 195 HOH HOH . 
L 7 HOH B 62 462 153 HOH HOH . 
L 7 HOH B 63 463 152 HOH HOH . 
L 7 HOH B 64 464 179 HOH HOH . 
L 7 HOH B 65 465 80 HOH HOH . 
L 7 HOH B 66 466 173 HOH HOH . 
L 7 HOH B 67 467 170 HOH HOH . 
L 7 HOH B 68 468 172 HOH HOH . 
L 7 HOH B 69 469 117 HOH HOH . 
L 7 HOH B 70 470 165 HOH HOH . 
L 7 HOH B 71 471 199 HOH HOH . 
L 7 HOH B 72 472 147 HOH HOH . 
L 7 HOH B 73 473 213 HOH HOH . 
L 7 HOH B 74 474 202 HOH HOH . 
L 7 HOH B 75 475 67 HOH HOH . 
L 7 HOH B 76 476 182 HOH HOH . 
L 7 HOH B 77 477 190 HOH HOH . 
M 7 HOH C 1 201 166 HOH HOH . 
M 7 HOH C 2 202 113 HOH HOH . 
M 7 HOH C 3 203 77 HOH HOH . 
M 7 HOH C 4 204 15 HOH HOH . 
M 7 HOH C 5 205 111 HOH HOH . 
M 7 HOH C 6 206 155 HOH HOH . 
M 7 HOH C 7 207 211 HOH HOH . 
M 7 HOH C 8 208 88 HOH HOH . 
M 7 HOH C 9 209 218 HOH HOH . 
M 7 HOH C 10 210 193 HOH HOH . 
M 7 HOH C 11 211 57 HOH HOH . 
M 7 HOH C 12 212 63 HOH HOH . 
M 7 HOH C 13 213 76 HOH HOH . 
M 7 HOH C 14 214 86 HOH HOH . 
M 7 HOH C 15 215 178 HOH HOH . 
M 7 HOH C 16 216 118 HOH HOH . 
M 7 HOH C 17 217 184 HOH HOH . 
M 7 HOH C 18 218 128 HOH HOH . 
M 7 HOH C 19 219 53 HOH HOH . 
M 7 HOH C 20 220 50 HOH HOH . 
M 7 HOH C 21 221 103 HOH HOH . 
M 7 HOH C 22 222 74 HOH HOH . 
M 7 HOH C 23 223 125 HOH HOH . 
N 7 HOH D 1 401 191 HOH HOH . 
N 7 HOH D 2 402 79 HOH HOH . 
N 7 HOH D 3 403 70 HOH HOH . 
N 7 HOH D 4 404 115 HOH HOH . 
N 7 HOH D 5 405 100 HOH HOH . 
N 7 HOH D 6 406 144 HOH HOH . 
N 7 HOH D 7 407 48 HOH HOH . 
N 7 HOH D 8 408 183 HOH HOH . 
N 7 HOH D 9 409 62 HOH HOH . 
N 7 HOH D 10 410 45 HOH HOH . 
N 7 HOH D 11 411 33 HOH HOH . 
N 7 HOH D 12 412 19 HOH HOH . 
N 7 HOH D 13 413 156 HOH HOH . 
N 7 HOH D 14 414 1 HOH HOH . 
N 7 HOH D 15 415 61 HOH HOH . 
O 7 HOH E 1 401 157 HOH HOH . 
O 7 HOH E 2 402 78 HOH HOH . 
O 7 HOH E 3 403 54 HOH HOH . 
O 7 HOH E 4 404 94 HOH HOH . 
O 7 HOH E 5 405 212 HOH HOH . 
O 7 HOH E 6 406 124 HOH HOH . 
O 7 HOH E 7 407 154 HOH HOH . 
O 7 HOH E 8 408 140 HOH HOH . 
O 7 HOH E 9 409 146 HOH HOH . 
O 7 HOH E 10 410 196 HOH HOH . 
O 7 HOH E 11 411 84 HOH HOH . 
O 7 HOH E 12 412 82 HOH HOH . 
O 7 HOH E 13 413 116 HOH HOH . 
O 7 HOH E 14 414 89 HOH HOH . 
O 7 HOH E 15 415 189 HOH HOH . 
O 7 HOH E 16 416 87 HOH HOH . 
O 7 HOH E 17 417 192 HOH HOH . 
O 7 HOH E 18 418 198 HOH HOH . 
O 7 HOH E 19 419 204 HOH HOH . 
O 7 HOH E 20 420 137 HOH HOH . 
O 7 HOH E 21 421 109 HOH HOH . 
O 7 HOH E 22 422 175 HOH HOH . 
O 7 HOH E 23 423 210 HOH HOH . 
O 7 HOH E 24 424 205 HOH HOH . 
O 7 HOH E 25 425 121 HOH HOH . 
O 7 HOH E 26 426 99 HOH HOH . 
O 7 HOH E 27 427 207 HOH HOH . 
O 7 HOH E 28 428 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 6 10.137 -7.576 74.865 1 54.72 ? C1 EDO 302 D 1 
HETATM 2 O O1 EDO . . . I 6 10.191 -7.446 73.44 1 54.56 ? O1 EDO 302 D 1 
HETATM 3 C C2 EDO . . . I 6 10.044 -9.051 75.237 1 55.12 ? C2 EDO 302 D 1 
HETATM 4 O O2 EDO . . . I 6 9.989 -9.182 76.662 1 55.41 ? O2 EDO 302 D 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           586 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#