data_6O9S # _model_server_result.job_id qU1TtUd-pARdh6UU88aqsQ _model_server_result.datetime_utc '2025-09-01 01:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6O9S # _exptl.entry_id 6O9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O9S _cell.length_a 58.672 _cell.length_b 58.672 _cell.length_c 147.602 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 61 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 391 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.351 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 224 n n CAJ CAO NXL sing 225 n n CAJ N NXL sing 226 n n OAL SAR NXL sing 227 n n CAO CAH NXL sing 228 n n CAN N NXL sing 229 n n CAN OAC NXL doub 230 n n OAG SAR NXL doub 231 n n N CA NXL sing 232 n n SAR OAE NXL doub 233 n n SAR OAD NXL sing 234 n n O C NXL doub 235 n n CAH CB NXL sing 236 n n CA C NXL sing 237 n n CA CB NXL sing 238 n n C NAA NXL sing 239 n n NAK OAL NXL sing 240 n n CAN H1 NXL sing 241 n n CAJ H2 NXL sing 242 n n CAJ H3 NXL sing 243 n n CA H4 NXL sing 244 n n NAA H5 NXL sing 245 n n NAA H6 NXL sing 246 n n CB H7 NXL sing 247 n n CB H8 NXL sing 248 n n CAH H9 NXL sing 249 n n CAH H10 NXL sing 250 n n CAO H11 NXL sing 251 n n NAK H12 NXL sing 252 n n OAD H13 NXL sing 253 n n # _atom_sites.entry_id 6O9S _atom_sites.fract_transf_matrix[1][1] 0.017044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 601 1 NXL NXL . C 3 SO4 A 1 602 1 SO4 SO4 . D 4 HOH A 1 701 83 HOH HOH . D 4 HOH A 2 702 234 HOH HOH . D 4 HOH A 3 703 231 HOH HOH . D 4 HOH A 4 704 200 HOH HOH . D 4 HOH A 5 705 52 HOH HOH . D 4 HOH A 6 706 43 HOH HOH . D 4 HOH A 7 707 86 HOH HOH . D 4 HOH A 8 708 221 HOH HOH . D 4 HOH A 9 709 75 HOH HOH . D 4 HOH A 10 710 150 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 93 HOH HOH . D 4 HOH A 13 713 160 HOH HOH . D 4 HOH A 14 714 164 HOH HOH . D 4 HOH A 15 715 206 HOH HOH . D 4 HOH A 16 716 27 HOH HOH . D 4 HOH A 17 717 123 HOH HOH . D 4 HOH A 18 718 80 HOH HOH . D 4 HOH A 19 719 236 HOH HOH . D 4 HOH A 20 720 133 HOH HOH . D 4 HOH A 21 721 122 HOH HOH . D 4 HOH A 22 722 209 HOH HOH . D 4 HOH A 23 723 18 HOH HOH . D 4 HOH A 24 724 205 HOH HOH . D 4 HOH A 25 725 15 HOH HOH . D 4 HOH A 26 726 41 HOH HOH . D 4 HOH A 27 727 201 HOH HOH . D 4 HOH A 28 728 104 HOH HOH . D 4 HOH A 29 729 1 HOH HOH . D 4 HOH A 30 730 20 HOH HOH . D 4 HOH A 31 731 66 HOH HOH . D 4 HOH A 32 732 79 HOH HOH . D 4 HOH A 33 733 16 HOH HOH . D 4 HOH A 34 734 6 HOH HOH . D 4 HOH A 35 735 3 HOH HOH . D 4 HOH A 36 736 49 HOH HOH . D 4 HOH A 37 737 51 HOH HOH . D 4 HOH A 38 738 69 HOH HOH . D 4 HOH A 39 739 19 HOH HOH . D 4 HOH A 40 740 159 HOH HOH . D 4 HOH A 41 741 116 HOH HOH . D 4 HOH A 42 742 34 HOH HOH . D 4 HOH A 43 743 105 HOH HOH . D 4 HOH A 44 744 8 HOH HOH . D 4 HOH A 45 745 229 HOH HOH . D 4 HOH A 46 746 101 HOH HOH . D 4 HOH A 47 747 233 HOH HOH . D 4 HOH A 48 748 50 HOH HOH . D 4 HOH A 49 749 198 HOH HOH . D 4 HOH A 50 750 9 HOH HOH . D 4 HOH A 51 751 2 HOH HOH . D 4 HOH A 52 752 153 HOH HOH . D 4 HOH A 53 753 25 HOH HOH . D 4 HOH A 54 754 21 HOH HOH . D 4 HOH A 55 755 106 HOH HOH . D 4 HOH A 56 756 143 HOH HOH . D 4 HOH A 57 757 111 HOH HOH . D 4 HOH A 58 758 64 HOH HOH . D 4 HOH A 59 759 129 HOH HOH . D 4 HOH A 60 760 119 HOH HOH . D 4 HOH A 61 761 38 HOH HOH . D 4 HOH A 62 762 35 HOH HOH . D 4 HOH A 63 763 239 HOH HOH . D 4 HOH A 64 764 30 HOH HOH . D 4 HOH A 65 765 157 HOH HOH . D 4 HOH A 66 766 78 HOH HOH . D 4 HOH A 67 767 17 HOH HOH . D 4 HOH A 68 768 165 HOH HOH . D 4 HOH A 69 769 37 HOH HOH . D 4 HOH A 70 770 22 HOH HOH . D 4 HOH A 71 771 68 HOH HOH . D 4 HOH A 72 772 63 HOH HOH . D 4 HOH A 73 773 55 HOH HOH . D 4 HOH A 74 774 237 HOH HOH . D 4 HOH A 75 775 192 HOH HOH . D 4 HOH A 76 776 13 HOH HOH . D 4 HOH A 77 777 125 HOH HOH . D 4 HOH A 78 778 158 HOH HOH . D 4 HOH A 79 779 23 HOH HOH . D 4 HOH A 80 780 4 HOH HOH . D 4 HOH A 81 781 204 HOH HOH . D 4 HOH A 82 782 29 HOH HOH . D 4 HOH A 83 783 39 HOH HOH . D 4 HOH A 84 784 73 HOH HOH . D 4 HOH A 85 785 7 HOH HOH . D 4 HOH A 86 786 47 HOH HOH . D 4 HOH A 87 787 87 HOH HOH . D 4 HOH A 88 788 147 HOH HOH . D 4 HOH A 89 789 67 HOH HOH . D 4 HOH A 90 790 71 HOH HOH . D 4 HOH A 91 791 207 HOH HOH . D 4 HOH A 92 792 89 HOH HOH . D 4 HOH A 93 793 132 HOH HOH . D 4 HOH A 94 794 238 HOH HOH . D 4 HOH A 95 795 53 HOH HOH . D 4 HOH A 96 796 5 HOH HOH . D 4 HOH A 97 797 72 HOH HOH . D 4 HOH A 98 798 142 HOH HOH . D 4 HOH A 99 799 44 HOH HOH . D 4 HOH A 100 800 216 HOH HOH . D 4 HOH A 101 801 76 HOH HOH . D 4 HOH A 102 802 57 HOH HOH . D 4 HOH A 103 803 12 HOH HOH . D 4 HOH A 104 804 179 HOH HOH . D 4 HOH A 105 805 40 HOH HOH . D 4 HOH A 106 806 240 HOH HOH . D 4 HOH A 107 807 28 HOH HOH . D 4 HOH A 108 808 60 HOH HOH . D 4 HOH A 109 809 98 HOH HOH . D 4 HOH A 110 810 31 HOH HOH . D 4 HOH A 111 811 36 HOH HOH . D 4 HOH A 112 812 14 HOH HOH . D 4 HOH A 113 813 91 HOH HOH . D 4 HOH A 114 814 45 HOH HOH . D 4 HOH A 115 815 151 HOH HOH . D 4 HOH A 116 816 77 HOH HOH . D 4 HOH A 117 817 58 HOH HOH . D 4 HOH A 118 818 61 HOH HOH . D 4 HOH A 119 819 59 HOH HOH . D 4 HOH A 120 820 48 HOH HOH . D 4 HOH A 121 821 32 HOH HOH . D 4 HOH A 122 822 140 HOH HOH . D 4 HOH A 123 823 187 HOH HOH . D 4 HOH A 124 824 54 HOH HOH . D 4 HOH A 125 825 220 HOH HOH . D 4 HOH A 126 826 24 HOH HOH . D 4 HOH A 127 827 136 HOH HOH . D 4 HOH A 128 828 148 HOH HOH . D 4 HOH A 129 829 131 HOH HOH . D 4 HOH A 130 830 161 HOH HOH . D 4 HOH A 131 831 42 HOH HOH . D 4 HOH A 132 832 189 HOH HOH . D 4 HOH A 133 833 70 HOH HOH . D 4 HOH A 134 834 190 HOH HOH . D 4 HOH A 135 835 92 HOH HOH . D 4 HOH A 136 836 10 HOH HOH . D 4 HOH A 137 837 102 HOH HOH . D 4 HOH A 138 838 232 HOH HOH . D 4 HOH A 139 839 141 HOH HOH . D 4 HOH A 140 840 226 HOH HOH . D 4 HOH A 141 841 128 HOH HOH . D 4 HOH A 142 842 88 HOH HOH . D 4 HOH A 143 843 199 HOH HOH . D 4 HOH A 144 844 162 HOH HOH . D 4 HOH A 145 845 74 HOH HOH . D 4 HOH A 146 846 134 HOH HOH . D 4 HOH A 147 847 230 HOH HOH . D 4 HOH A 148 848 84 HOH HOH . D 4 HOH A 149 849 85 HOH HOH . D 4 HOH A 150 850 227 HOH HOH . D 4 HOH A 151 851 96 HOH HOH . D 4 HOH A 152 852 174 HOH HOH . D 4 HOH A 153 853 117 HOH HOH . D 4 HOH A 154 854 135 HOH HOH . D 4 HOH A 155 855 224 HOH HOH . D 4 HOH A 156 856 186 HOH HOH . D 4 HOH A 157 857 172 HOH HOH . D 4 HOH A 158 858 81 HOH HOH . D 4 HOH A 159 859 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 65.021 77.727 155.223 1 14.7 ? OAC NXL 601 A 1 HETATM 2 C CAN NXL . . . B 2 65.457 78.438 154.338 1 16.12 ? CAN NXL 601 A 1 HETATM 3 N N NXL . . . B 2 66.277 77.857 153.277 1 18.96 ? N NXL 601 A 1 HETATM 4 C CAJ NXL . . . B 2 66.83 78.602 152.141 1 24.59 ? CAJ NXL 601 A 1 HETATM 5 C CA NXL . . . B 2 66.532 76.449 153.361 1 22.48 ? CA NXL 601 A 1 HETATM 6 C C NXL . . . B 2 67.986 76.279 153.831 1 34.31 ? C NXL 601 A 1 HETATM 7 O O NXL . . . B 2 68.854 77.088 153.556 1 30.61 ? O NXL 601 A 1 HETATM 8 N NAA NXL . . . B 2 68.324 75.19 154.703 1 51.88 ? NAA NXL 601 A 1 HETATM 9 C CB NXL . . . B 2 66.132 75.841 152.017 1 27.44 ? CB NXL 601 A 1 HETATM 10 C CAH NXL . . . B 2 66.473 76.628 150.756 1 29.31 ? CAH NXL 601 A 1 HETATM 11 C CAO NXL . . . B 2 66.046 78.074 150.882 1 20.74 ? CAO NXL 601 A 1 HETATM 12 N NAK NXL . . . B 2 64.597 78.155 150.825 1 29.66 ? NAK NXL 601 A 1 HETATM 13 O OAL NXL . . . B 2 63.986 77.497 151.833 1 53.31 ? OAL NXL 601 A 1 HETATM 14 S SAR NXL . . . B 2 62.554 77.945 152.045 1 32.55 ? SAR NXL 601 A 1 HETATM 15 O OAD NXL . . . B 2 61.9 76.887 152.948 1 28.24 ? OAD NXL 601 A 1 HETATM 16 O OAE NXL . . . B 2 61.8 78.112 150.752 1 55.04 ? OAE NXL 601 A 1 HETATM 17 O OAG NXL . . . B 2 62.55 79.197 152.871 1 74.16 ? OAG NXL 601 A 1 HETATM 18 H H2 NXL . . . B 2 66.685 79.592 152.261 1 29.56 ? H2 NXL 601 A 1 HETATM 19 H H3 NXL . . . B 2 67.817 78.423 152.046 1 29.56 ? H3 NXL 601 A 1 HETATM 20 H H4 NXL . . . B 2 66.126 75.935 154.054 1 27.03 ? H4 NXL 601 A 1 HETATM 21 H H5 NXL . . . B 2 69.196 75.102 155.021 1 62.31 ? H5 NXL 601 A 1 HETATM 22 H H6 NXL . . . B 2 67.672 74.572 154.95 1 62.31 ? H6 NXL 601 A 1 HETATM 23 H H7 NXL . . . B 2 65.147 75.709 152.031 1 32.98 ? H7 NXL 601 A 1 HETATM 24 H H8 NXL . . . B 2 66.578 74.955 151.946 1 32.98 ? H8 NXL 601 A 1 HETATM 25 H H9 NXL . . . B 2 67.441 76.59 150.604 1 35.22 ? H9 NXL 601 A 1 HETATM 26 H H10 NXL . . . B 2 66.013 76.222 149.989 1 35.22 ? H10 NXL 601 A 1 HETATM 27 H H11 NXL . . . B 2 66.244 78.681 150.156 1 24.94 ? H11 NXL 601 A 1 HETATM 28 H H12 NXL . . . B 2 64.309 77.755 149.991 1 35.64 ? H12 NXL 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #