data_6O9T # _model_server_result.job_id IHtt6b4wEJVoOp0_AsZo1Q _model_server_result.datetime_utc '2025-02-28 21:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6o9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6O9T # _exptl.entry_id 6O9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3,5,6-tetramethyl-1H,7H-pyrazolo[1,2-a]pyrazole-1,7-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6O9T _cell.length_a 103.11 _cell.length_b 103.11 _cell.length_c 89.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6O9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -103.11 0 3 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 -51.555 -51.555 0 4 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 51.555 -51.555 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 133 A CYS 133 1_555 D C8 6E3 . A 6E3 403 3_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? covale ? covale2 A SG CYS 136 A CYS 136 1_555 D C7 6E3 . A 6E3 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc1 A O THR 96 A THR 96 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A O THR 96 A THR 96 1_555 C K K . A K 402 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 A O GLY 98 A GLY 98 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A O GLY 98 A GLY 98 1_555 B K K . A K 401 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 A O TYR 99 A TYR 99 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.459 ? metalc ? metalc6 A O TYR 99 A TYR 99 1_555 B K K . A K 401 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.459 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id 6E3 _chem_comp.mon_nstd_flag . _chem_comp.name 2,3,5,6-tetramethyl-1H,7H-pyrazolo[1,2-a]pyrazole-1,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C1 6E3 sing 1 n n C8 C2 6E3 sing 2 n n C6 C4 6E3 sing 3 n n C7 C3 6E3 sing 4 n n C2 C1 6E3 doub 5 n n C2 N 6E3 sing 6 n n C1 C 6E3 sing 7 n n C4 C3 6E3 doub 8 n n C4 C5 6E3 sing 9 n n C3 N 6E3 sing 10 n n C5 O1 6E3 doub 11 n n C5 N1 6E3 sing 12 n n N N1 6E3 sing 13 n n C N1 6E3 sing 14 n n C O 6E3 doub 15 n n C7 H4 6E3 sing 16 n n C7 H3 6E3 sing 17 n n C7 H11 6E3 sing 18 n n C8 H6 6E3 sing 19 n n C8 H5 6E3 sing 20 n n C8 H7 6E3 sing 21 n n C9 H9 6E3 sing 22 n n C9 H10 6E3 sing 23 n n C9 H8 6E3 sing 24 n n C6 H2 6E3 sing 25 n n C6 H1 6E3 sing 26 n n C6 H 6E3 sing 27 n n # _atom_sites.entry_id 6O9T _atom_sites.fract_transf_matrix[1][1] 0.009698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 401 1 K K . C 2 K A 1 402 4 K K . D 3 6E3 A 1 403 500 6E3 6E3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6E3 . . . D 3 8.458 -43.757 22.872 1 222.94 ? O1 6E3 403 A 1 HETATM 2 C C7 6E3 . . . D 3 4.687 -46.53 24.145 1 222.56 ? C7 6E3 403 A 1 HETATM 3 C C8 6E3 . . . D 3 5.729 -46.167 27.46 1 225.96 ? C8 6E3 403 A 1 HETATM 4 C C9 6E3 . . . D 3 8.468 -44.779 28.301 1 227.13 ? C9 6E3 403 A 1 HETATM 5 N N 6E3 . . . D 3 6.111 -44.722 25.235 1 225.4 ? N 6E3 403 A 1 HETATM 6 C C3 6E3 . . . D 3 5.794 -45.549 24.137 1 223.28 ? C3 6E3 403 A 1 HETATM 7 C C4 6E3 . . . D 3 6.605 -45.307 23.126 1 222.61 ? C4 6E3 403 A 1 HETATM 8 C C5 6E3 . . . D 3 7.548 -44.265 23.503 1 223.62 ? C5 6E3 403 A 1 HETATM 9 C C6 6E3 . . . D 3 6.568 -45.975 21.829 1 222.21 ? C6 6E3 403 A 1 HETATM 10 C C1 6E3 . . . D 3 7.701 -44.624 27.006 1 227.81 ? C1 6E3 403 A 1 HETATM 11 N N1 6E3 . . . D 3 7.199 -43.912 24.86 1 226.07 ? N1 6E3 403 A 1 HETATM 12 C C 6E3 . . . D 3 8.184 -43.779 25.918 1 228.33 ? C 6E3 403 A 1 HETATM 13 O O 6E3 . . . D 3 9.211 -43.11 25.864 1 229.6 ? O 6E3 403 A 1 HETATM 14 C C2 6E3 . . . D 3 6.519 -45.192 26.588 1 226.87 ? C2 6E3 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #