data_6OA0 # _model_server_result.job_id vfuqNj8LwUbAmtPL2-_wig _model_server_result.datetime_utc '2024-10-19 01:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6OA0 # _exptl.entry_id 6OA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.58 _cell.angle_gamma 90 _cell.entry_id 6OA0 _cell.length_a 44.697 _cell.length_b 66.167 _cell.length_c 88.864 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id M1D _chem_comp.mon_nstd_flag . _chem_comp.name '4-(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C M1D doub 218 n n C O1 M1D sing 219 n n C C1 M1D sing 220 n n C1 C2 M1D sing 221 n n C10 N3 M1D sing 222 n n N1 C4 M1D doub 223 n y N1 C5 M1D sing 224 n y N3 C5 M1D sing 225 n n N3 C9 M1D sing 226 n n C2 C3 M1D sing 227 n n C4 N M1D sing 228 n y C5 C6 M1D doub 229 n y O3 C9 M1D doub 230 n n C9 N2 M1D sing 231 n n N C6 M1D sing 232 n y N C3 M1D sing 233 n n C6 C7 M1D sing 234 n n N2 C7 M1D sing 235 n n N2 C8 M1D sing 236 n n C7 O2 M1D doub 237 n n C10 H1 M1D sing 238 n n C10 H2 M1D sing 239 n n C10 H3 M1D sing 240 n n C4 H4 M1D sing 241 n n C8 H5 M1D sing 242 n n C8 H6 M1D sing 243 n n C8 H7 M1D sing 244 n n C3 H8 M1D sing 245 n n C3 H9 M1D sing 246 n n C2 H10 M1D sing 247 n n C2 H11 M1D sing 248 n n C1 H12 M1D sing 249 n n C1 H13 M1D sing 250 n n O1 H14 M1D sing 251 n n # _atom_sites.entry_id 6OA0 _atom_sites.fract_transf_matrix[1][1] 0.022373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M1D A 1 1001 1 M1D J29 . C 3 HOH A 1 1101 108 HOH HOH . C 3 HOH A 2 1102 181 HOH HOH . C 3 HOH A 3 1103 85 HOH HOH . C 3 HOH A 4 1104 175 HOH HOH . C 3 HOH A 5 1105 121 HOH HOH . C 3 HOH A 6 1106 3 HOH HOH . C 3 HOH A 7 1107 77 HOH HOH . C 3 HOH A 8 1108 150 HOH HOH . C 3 HOH A 9 1109 20 HOH HOH . C 3 HOH A 10 1110 67 HOH HOH . C 3 HOH A 11 1111 86 HOH HOH . C 3 HOH A 12 1112 23 HOH HOH . C 3 HOH A 13 1113 158 HOH HOH . C 3 HOH A 14 1114 74 HOH HOH . C 3 HOH A 15 1115 4 HOH HOH . C 3 HOH A 16 1116 92 HOH HOH . C 3 HOH A 17 1117 39 HOH HOH . C 3 HOH A 18 1118 162 HOH HOH . C 3 HOH A 19 1119 35 HOH HOH . C 3 HOH A 20 1120 54 HOH HOH . C 3 HOH A 21 1121 45 HOH HOH . C 3 HOH A 22 1122 149 HOH HOH . C 3 HOH A 23 1123 204 HOH HOH . C 3 HOH A 24 1124 7 HOH HOH . C 3 HOH A 25 1125 53 HOH HOH . C 3 HOH A 26 1126 11 HOH HOH . C 3 HOH A 27 1127 80 HOH HOH . C 3 HOH A 28 1128 68 HOH HOH . C 3 HOH A 29 1129 64 HOH HOH . C 3 HOH A 30 1130 161 HOH HOH . C 3 HOH A 31 1131 21 HOH HOH . C 3 HOH A 32 1132 76 HOH HOH . C 3 HOH A 33 1133 120 HOH HOH . C 3 HOH A 34 1134 15 HOH HOH . C 3 HOH A 35 1135 134 HOH HOH . C 3 HOH A 36 1136 37 HOH HOH . C 3 HOH A 37 1137 207 HOH HOH . C 3 HOH A 38 1138 72 HOH HOH . C 3 HOH A 39 1139 34 HOH HOH . C 3 HOH A 40 1140 107 HOH HOH . C 3 HOH A 41 1141 156 HOH HOH . C 3 HOH A 42 1142 17 HOH HOH . C 3 HOH A 43 1143 148 HOH HOH . C 3 HOH A 44 1144 16 HOH HOH . C 3 HOH A 45 1145 211 HOH HOH . C 3 HOH A 46 1146 51 HOH HOH . C 3 HOH A 47 1147 60 HOH HOH . C 3 HOH A 48 1148 19 HOH HOH . C 3 HOH A 49 1149 62 HOH HOH . C 3 HOH A 50 1150 25 HOH HOH . C 3 HOH A 51 1151 47 HOH HOH . C 3 HOH A 52 1152 157 HOH HOH . C 3 HOH A 53 1153 43 HOH HOH . C 3 HOH A 54 1154 98 HOH HOH . C 3 HOH A 55 1155 97 HOH HOH . C 3 HOH A 56 1156 128 HOH HOH . C 3 HOH A 57 1157 96 HOH HOH . C 3 HOH A 58 1158 143 HOH HOH . C 3 HOH A 59 1159 44 HOH HOH . C 3 HOH A 60 1160 49 HOH HOH . C 3 HOH A 61 1161 170 HOH HOH . C 3 HOH A 62 1162 52 HOH HOH . C 3 HOH A 63 1163 8 HOH HOH . C 3 HOH A 64 1164 63 HOH HOH . C 3 HOH A 65 1165 55 HOH HOH . C 3 HOH A 66 1166 6 HOH HOH . C 3 HOH A 67 1167 36 HOH HOH . C 3 HOH A 68 1168 151 HOH HOH . C 3 HOH A 69 1169 12 HOH HOH . C 3 HOH A 70 1170 168 HOH HOH . C 3 HOH A 71 1171 38 HOH HOH . C 3 HOH A 72 1172 116 HOH HOH . C 3 HOH A 73 1173 111 HOH HOH . C 3 HOH A 74 1174 94 HOH HOH . C 3 HOH A 75 1175 66 HOH HOH . C 3 HOH A 76 1176 118 HOH HOH . C 3 HOH A 77 1177 152 HOH HOH . C 3 HOH A 78 1178 32 HOH HOH . C 3 HOH A 79 1179 29 HOH HOH . C 3 HOH A 80 1180 110 HOH HOH . C 3 HOH A 81 1181 13 HOH HOH . C 3 HOH A 82 1182 5 HOH HOH . C 3 HOH A 83 1183 24 HOH HOH . C 3 HOH A 84 1184 169 HOH HOH . C 3 HOH A 85 1185 65 HOH HOH . C 3 HOH A 86 1186 119 HOH HOH . C 3 HOH A 87 1187 70 HOH HOH . C 3 HOH A 88 1188 172 HOH HOH . C 3 HOH A 89 1189 208 HOH HOH . C 3 HOH A 90 1190 91 HOH HOH . C 3 HOH A 91 1191 155 HOH HOH . C 3 HOH A 92 1192 2 HOH HOH . C 3 HOH A 93 1193 28 HOH HOH . C 3 HOH A 94 1194 82 HOH HOH . C 3 HOH A 95 1195 33 HOH HOH . C 3 HOH A 96 1196 163 HOH HOH . C 3 HOH A 97 1197 83 HOH HOH . C 3 HOH A 98 1198 178 HOH HOH . C 3 HOH A 99 1199 18 HOH HOH . C 3 HOH A 100 1200 50 HOH HOH . C 3 HOH A 101 1201 93 HOH HOH . C 3 HOH A 102 1202 106 HOH HOH . C 3 HOH A 103 1203 30 HOH HOH . C 3 HOH A 104 1204 122 HOH HOH . C 3 HOH A 105 1205 10 HOH HOH . C 3 HOH A 106 1206 154 HOH HOH . C 3 HOH A 107 1207 78 HOH HOH . C 3 HOH A 108 1208 59 HOH HOH . C 3 HOH A 109 1209 87 HOH HOH . C 3 HOH A 110 1210 131 HOH HOH . C 3 HOH A 111 1211 190 HOH HOH . C 3 HOH A 112 1212 126 HOH HOH . C 3 HOH A 113 1213 180 HOH HOH . C 3 HOH A 114 1214 115 HOH HOH . C 3 HOH A 115 1215 191 HOH HOH . C 3 HOH A 116 1216 58 HOH HOH . C 3 HOH A 117 1217 88 HOH HOH . C 3 HOH A 118 1218 102 HOH HOH . C 3 HOH A 119 1219 197 HOH HOH . C 3 HOH A 120 1220 75 HOH HOH . C 3 HOH A 121 1221 135 HOH HOH . C 3 HOH A 122 1222 90 HOH HOH . C 3 HOH A 123 1223 31 HOH HOH . C 3 HOH A 124 1224 164 HOH HOH . C 3 HOH A 125 1225 101 HOH HOH . C 3 HOH A 126 1226 113 HOH HOH . C 3 HOH A 127 1227 1 HOH HOH . C 3 HOH A 128 1228 71 HOH HOH . C 3 HOH A 129 1229 48 HOH HOH . C 3 HOH A 130 1230 132 HOH HOH . C 3 HOH A 131 1231 81 HOH HOH . C 3 HOH A 132 1232 100 HOH HOH . C 3 HOH A 133 1233 189 HOH HOH . C 3 HOH A 134 1234 136 HOH HOH . C 3 HOH A 135 1235 57 HOH HOH . C 3 HOH A 136 1236 130 HOH HOH . C 3 HOH A 137 1237 42 HOH HOH . C 3 HOH A 138 1238 41 HOH HOH . C 3 HOH A 139 1239 140 HOH HOH . C 3 HOH A 140 1240 112 HOH HOH . C 3 HOH A 141 1241 206 HOH HOH . C 3 HOH A 142 1242 40 HOH HOH . C 3 HOH A 143 1243 22 HOH HOH . C 3 HOH A 144 1244 139 HOH HOH . C 3 HOH A 145 1245 69 HOH HOH . C 3 HOH A 146 1246 185 HOH HOH . C 3 HOH A 147 1247 14 HOH HOH . C 3 HOH A 148 1248 165 HOH HOH . C 3 HOH A 149 1249 146 HOH HOH . C 3 HOH A 150 1250 117 HOH HOH . C 3 HOH A 151 1251 89 HOH HOH . C 3 HOH A 152 1252 144 HOH HOH . C 3 HOH A 153 1253 105 HOH HOH . C 3 HOH A 154 1254 124 HOH HOH . C 3 HOH A 155 1255 200 HOH HOH . C 3 HOH A 156 1256 27 HOH HOH . C 3 HOH A 157 1257 9 HOH HOH . C 3 HOH A 158 1258 103 HOH HOH . C 3 HOH A 159 1259 26 HOH HOH . C 3 HOH A 160 1260 167 HOH HOH . C 3 HOH A 161 1261 201 HOH HOH . C 3 HOH A 162 1262 196 HOH HOH . C 3 HOH A 163 1263 214 HOH HOH . C 3 HOH A 164 1264 182 HOH HOH . C 3 HOH A 165 1265 56 HOH HOH . C 3 HOH A 166 1266 125 HOH HOH . C 3 HOH A 167 1267 203 HOH HOH . C 3 HOH A 168 1268 213 HOH HOH . C 3 HOH A 169 1269 188 HOH HOH . C 3 HOH A 170 1270 160 HOH HOH . C 3 HOH A 171 1271 195 HOH HOH . C 3 HOH A 172 1272 192 HOH HOH . C 3 HOH A 173 1273 138 HOH HOH . C 3 HOH A 174 1274 142 HOH HOH . C 3 HOH A 175 1275 199 HOH HOH . C 3 HOH A 176 1276 95 HOH HOH . C 3 HOH A 177 1277 177 HOH HOH . C 3 HOH A 178 1278 141 HOH HOH . C 3 HOH A 179 1279 212 HOH HOH . C 3 HOH A 180 1280 179 HOH HOH . C 3 HOH A 181 1281 147 HOH HOH . C 3 HOH A 182 1282 109 HOH HOH . C 3 HOH A 183 1283 174 HOH HOH . C 3 HOH A 184 1284 99 HOH HOH . C 3 HOH A 185 1285 202 HOH HOH . C 3 HOH A 186 1286 171 HOH HOH . C 3 HOH A 187 1287 173 HOH HOH . C 3 HOH A 188 1288 129 HOH HOH . C 3 HOH A 189 1289 184 HOH HOH . C 3 HOH A 190 1290 187 HOH HOH . C 3 HOH A 191 1291 114 HOH HOH . C 3 HOH A 192 1292 145 HOH HOH . C 3 HOH A 193 1293 133 HOH HOH . C 3 HOH A 194 1294 186 HOH HOH . C 3 HOH A 195 1295 153 HOH HOH . C 3 HOH A 196 1296 210 HOH HOH . C 3 HOH A 197 1297 194 HOH HOH . C 3 HOH A 198 1298 61 HOH HOH . C 3 HOH A 199 1299 137 HOH HOH . C 3 HOH A 200 1300 123 HOH HOH . C 3 HOH A 201 1301 176 HOH HOH . C 3 HOH A 202 1302 46 HOH HOH . C 3 HOH A 203 1303 198 HOH HOH . C 3 HOH A 204 1304 209 HOH HOH . C 3 HOH A 205 1305 193 HOH HOH . C 3 HOH A 206 1306 205 HOH HOH . C 3 HOH A 207 1307 73 HOH HOH . C 3 HOH A 208 1308 79 HOH HOH . C 3 HOH A 209 1309 183 HOH HOH . C 3 HOH A 210 1310 127 HOH HOH . C 3 HOH A 211 1311 104 HOH HOH . C 3 HOH A 212 1312 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 M1D . . . B 2 -3.821 -6.427 23.955 1 34.49 ? O3 M1D 1001 A 1 HETATM 2 C C9 M1D . . . B 2 -4.35 -7.558 23.981 1 32.96 ? C9 M1D 1001 A 1 HETATM 3 N N3 M1D . . . B 2 -5.673 -7.732 23.508 1 33.98 ? N3 M1D 1001 A 1 HETATM 4 C C10 M1D . . . B 2 -6.448 -6.595 22.937 1 32.79 ? C10 M1D 1001 A 1 HETATM 5 C C5 M1D . . . B 2 -6.21 -9.002 23.593 1 34.4 ? C5 M1D 1001 A 1 HETATM 6 N N1 M1D . . . B 2 -7.411 -9.417 23.249 1 35.36 ? N1 M1D 1001 A 1 HETATM 7 C C4 M1D . . . B 2 -7.549 -10.768 23.54 1 38.11 ? C4 M1D 1001 A 1 HETATM 8 N N2 M1D . . . B 2 -3.672 -8.659 24.574 1 32.76 ? N2 M1D 1001 A 1 HETATM 9 C C8 M1D . . . B 2 -2.329 -8.552 25.092 1 32.82 ? C8 M1D 1001 A 1 HETATM 10 C C7 M1D . . . B 2 -4.302 -9.949 24.654 1 37.04 ? C7 M1D 1001 A 1 HETATM 11 O O2 M1D . . . B 2 -3.647 -10.917 25.127 1 30.92 ? O2 M1D 1001 A 1 HETATM 12 C C6 M1D . . . B 2 -5.595 -10.104 24.153 1 36.22 ? C6 M1D 1001 A 1 HETATM 13 N N M1D . . . B 2 -6.399 -11.221 24.06 1 39.37 ? N M1D 1001 A 1 HETATM 14 C C3 M1D . . . B 2 -6.137 -12.587 24.548 1 42.05 ? C3 M1D 1001 A 1 HETATM 15 C C2 M1D . . . B 2 -5.494 -13.477 23.522 1 44.62 ? C2 M1D 1001 A 1 HETATM 16 C C1 M1D . . . B 2 -6.536 -13.86 22.457 1 49.51 ? C1 M1D 1001 A 1 HETATM 17 C C M1D . . . B 2 -5.869 -14.685 21.38 1 52.99 ? C M1D 1001 A 1 HETATM 18 O O1 M1D . . . B 2 -4.943 -15.428 21.746 1 52.52 ? O1 M1D 1001 A 1 HETATM 19 O O M1D . . . B 2 -6.233 -14.614 20.066 1 53.32 ? O M1D 1001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #