data_6OAB # _model_server_result.job_id aT7pNfqbAD2t8fD2acZm4g _model_server_result.datetime_utc '2024-11-27 21:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":901}' # _entry.id 6OAB # _exptl.entry_id 6OAB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 V N N ? 3 W N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id O _struct_conn.ptnr1_label_atom_id BE _struct_conn.ptnr1_label_comp_id BEF _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id BEF _struct_conn.ptnr1_auth_seq_id 903 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id Q _struct_conn.ptnr2_label_atom_id O3B _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 905 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.604 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6OAB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ADP D 1 901 901 ADP ADP . H 4 BEF D 1 902 902 BEF BEF . I 4 BEF D 1 903 903 BEF BEF . J 3 ADP D 1 904 901 ADP ADP . K 3 ADP E 1 901 902 ADP ADP . L 3 ADP E 1 902 903 ADP ADP . M 3 ADP B 1 901 902 ADP ADP . N 4 BEF B 1 902 904 BEF BEF . O 4 BEF B 1 903 905 BEF BEF . P 4 BEF B 1 904 906 BEF BEF . Q 3 ADP B 1 905 1001 ADP ADP . R 3 ADP C 1 901 901 ADP ADP . S 3 ADP C 1 902 902 ADP ADP . T 4 BEF C 1 903 903 BEF BEF . U 4 BEF C 1 904 904 BEF BEF . V 3 ADP A 1 901 903 ADP ADP . W 3 ADP A 1 902 901 ADP ADP . X 4 BEF A 1 903 902 BEF BEF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . V 3 160.048 136.787 89.398 1 100.59 ? PB ADP 901 A 1 HETATM 2 O O1B ADP . . . V 3 160.276 135.84 88.245 1 100.59 ? O1B ADP 901 A 1 HETATM 3 O O2B ADP . . . V 3 159.418 138.089 88.967 1 100.59 ? O2B ADP 901 A 1 HETATM 4 O O3B ADP . . . V 3 159.32 136.139 90.55 1 100.59 ? O3B ADP 901 A 1 HETATM 5 P PA ADP . . . V 3 162.798 137.837 89.267 1 100.59 ? PA ADP 901 A 1 HETATM 6 O O1A ADP . . . V 3 162.389 138.422 87.956 1 100.59 ? O1A ADP 901 A 1 HETATM 7 O O2A ADP . . . V 3 163.466 138.727 90.262 1 100.59 ? O2A ADP 901 A 1 HETATM 8 O O3A ADP . . . V 3 161.514 137.167 89.957 1 100.59 ? O3A ADP 901 A 1 HETATM 9 O O5' ADP . . . V 3 163.715 136.546 89.01 1 100.59 ? O5' ADP 901 A 1 HETATM 10 C C5' ADP . . . V 3 163.269 135.56 88.044 1 100.59 ? C5' ADP 901 A 1 HETATM 11 C C4' ADP . . . V 3 164.076 134.296 88.211 1 100.59 ? C4' ADP 901 A 1 HETATM 12 O O4' ADP . . . V 3 165.096 134.242 87.18 1 100.59 ? O4' ADP 901 A 1 HETATM 13 C C3' ADP . . . V 3 164.824 134.146 89.544 1 100.59 ? C3' ADP 901 A 1 HETATM 14 O O3' ADP . . . V 3 164.819 132.796 89.99 1 100.59 ? O3' ADP 901 A 1 HETATM 15 C C2' ADP . . . V 3 166.237 134.617 89.191 1 100.59 ? C2' ADP 901 A 1 HETATM 16 O O2' ADP . . . V 3 167.223 134.07 90.04 1 100.59 ? O2' ADP 901 A 1 HETATM 17 C C1' ADP . . . V 3 166.37 134.097 87.764 1 100.59 ? C1' ADP 901 A 1 HETATM 18 N N9 ADP . . . V 3 167.336 134.831 86.956 1 100.59 ? N9 ADP 901 A 1 HETATM 19 C C8 ADP . . . V 3 167.87 134.435 85.756 1 100.59 ? C8 ADP 901 A 1 HETATM 20 N N7 ADP . . . V 3 168.718 135.297 85.255 1 100.59 ? N7 ADP 901 A 1 HETATM 21 C C5 ADP . . . V 3 168.747 136.329 86.181 1 100.59 ? C5 ADP 901 A 1 HETATM 22 C C6 ADP . . . V 3 169.459 137.544 86.223 1 100.59 ? C6 ADP 901 A 1 HETATM 23 N N6 ADP . . . V 3 170.307 137.937 85.277 1 100.59 ? N6 ADP 901 A 1 HETATM 24 N N1 ADP . . . V 3 169.257 138.349 87.293 1 100.59 ? N1 ADP 901 A 1 HETATM 25 C C2 ADP . . . V 3 168.402 137.948 88.241 1 100.59 ? C2 ADP 901 A 1 HETATM 26 N N3 ADP . . . V 3 167.681 136.833 88.308 1 100.59 ? N3 ADP 901 A 1 HETATM 27 C C4 ADP . . . V 3 167.899 136.054 87.236 1 100.59 ? C4 ADP 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 27 #