data_6OAH # _model_server_result.job_id BodgsQgQloOe3JOUD-OGSg _model_server_result.datetime_utc '2024-10-19 15:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6OAH # _exptl.entry_id 6OAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OAH _cell.length_a 111.33 _cell.length_b 111.33 _cell.length_c 70 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6OAH _atom_sites.fract_transf_matrix[1][1] 0.008982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL F 1 401 401 GOL GOL . C 3 M2V F 1 402 501 M2V DRG . D 3 M2V F 1 403 601 M2V DRG . E 4 PO4 F 1 404 1 PO4 PO4 . F 5 HOH F 1 501 57 HOH HOH . F 5 HOH F 2 502 3 HOH HOH . F 5 HOH F 3 503 29 HOH HOH . F 5 HOH F 4 504 81 HOH HOH . F 5 HOH F 5 505 72 HOH HOH . F 5 HOH F 6 506 68 HOH HOH . F 5 HOH F 7 507 4 HOH HOH . F 5 HOH F 8 508 43 HOH HOH . F 5 HOH F 9 509 22 HOH HOH . F 5 HOH F 10 510 11 HOH HOH . F 5 HOH F 11 511 75 HOH HOH . F 5 HOH F 12 512 42 HOH HOH . F 5 HOH F 13 513 13 HOH HOH . F 5 HOH F 14 514 39 HOH HOH . F 5 HOH F 15 515 45 HOH HOH . F 5 HOH F 16 516 10 HOH HOH . F 5 HOH F 17 517 40 HOH HOH . F 5 HOH F 18 518 73 HOH HOH . F 5 HOH F 19 519 69 HOH HOH . F 5 HOH F 20 520 60 HOH HOH . F 5 HOH F 21 521 17 HOH HOH . F 5 HOH F 22 522 21 HOH HOH . F 5 HOH F 23 523 8 HOH HOH . F 5 HOH F 24 524 86 HOH HOH . F 5 HOH F 25 525 54 HOH HOH . F 5 HOH F 26 526 6 HOH HOH . F 5 HOH F 27 527 51 HOH HOH . F 5 HOH F 28 528 23 HOH HOH . F 5 HOH F 29 529 44 HOH HOH . F 5 HOH F 30 530 78 HOH HOH . F 5 HOH F 31 531 25 HOH HOH . F 5 HOH F 32 532 66 HOH HOH . F 5 HOH F 33 533 37 HOH HOH . F 5 HOH F 34 534 7 HOH HOH . F 5 HOH F 35 535 89 HOH HOH . F 5 HOH F 36 536 46 HOH HOH . F 5 HOH F 37 537 27 HOH HOH . F 5 HOH F 38 538 5 HOH HOH . F 5 HOH F 39 539 53 HOH HOH . F 5 HOH F 40 540 65 HOH HOH . F 5 HOH F 41 541 83 HOH HOH . F 5 HOH F 42 542 2 HOH HOH . F 5 HOH F 43 543 33 HOH HOH . F 5 HOH F 44 544 52 HOH HOH . F 5 HOH F 45 545 58 HOH HOH . F 5 HOH F 46 546 48 HOH HOH . F 5 HOH F 47 547 79 HOH HOH . F 5 HOH F 48 548 38 HOH HOH . F 5 HOH F 49 549 41 HOH HOH . F 5 HOH F 50 550 84 HOH HOH . F 5 HOH F 51 551 88 HOH HOH . F 5 HOH F 52 552 31 HOH HOH . F 5 HOH F 53 553 82 HOH HOH . F 5 HOH F 54 554 28 HOH HOH . F 5 HOH F 55 555 85 HOH HOH . F 5 HOH F 56 556 18 HOH HOH . F 5 HOH F 57 557 12 HOH HOH . F 5 HOH F 58 558 76 HOH HOH . F 5 HOH F 59 559 36 HOH HOH . F 5 HOH F 60 560 19 HOH HOH . F 5 HOH F 61 561 16 HOH HOH . F 5 HOH F 62 562 9 HOH HOH . F 5 HOH F 63 563 59 HOH HOH . F 5 HOH F 64 564 77 HOH HOH . F 5 HOH F 65 565 30 HOH HOH . F 5 HOH F 66 566 87 HOH HOH . F 5 HOH F 67 567 71 HOH HOH . F 5 HOH F 68 568 74 HOH HOH . F 5 HOH F 69 569 20 HOH HOH . F 5 HOH F 70 570 80 HOH HOH . F 5 HOH F 71 571 61 HOH HOH . F 5 HOH F 72 572 32 HOH HOH . F 5 HOH F 73 573 35 HOH HOH . F 5 HOH F 74 574 70 HOH HOH . F 5 HOH F 75 575 63 HOH HOH . F 5 HOH F 76 576 56 HOH HOH . F 5 HOH F 77 577 50 HOH HOH . F 5 HOH F 78 578 15 HOH HOH . F 5 HOH F 79 579 1 HOH HOH . F 5 HOH F 80 580 47 HOH HOH . F 5 HOH F 81 581 26 HOH HOH . F 5 HOH F 82 582 49 HOH HOH . F 5 HOH F 83 583 62 HOH HOH . F 5 HOH F 84 584 55 HOH HOH . F 5 HOH F 85 585 14 HOH HOH . F 5 HOH F 86 586 24 HOH HOH . F 5 HOH F 87 587 67 HOH HOH . F 5 HOH F 88 588 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 11.097 10.841 6.536 1 68.85 ? C1 GOL 401 F 1 HETATM 2 O O1 GOL . . . B 2 9.981 11.151 5.707 1 66.45 ? O1 GOL 401 F 1 HETATM 3 C C2 GOL . . . B 2 11.05 11.579 7.859 1 72.51 ? C2 GOL 401 F 1 HETATM 4 O O2 GOL . . . B 2 10.429 10.768 8.857 1 70.35 ? O2 GOL 401 F 1 HETATM 5 C C3 GOL . . . B 2 12.42 11.993 8.35 1 74.68 ? C3 GOL 401 F 1 HETATM 6 O O3 GOL . . . B 2 12.703 13.356 8.055 1 72.5 ? O3 GOL 401 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #