data_6OAU
#
_model_server_result.job_id            bV9KhergZPZjfLipcvFpNQ 
_model_server_result.datetime_utc      '2024-11-21 17:46:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oau 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":503}' 
#
_entry.id    6OAU 
#
_exptl.entry_id    6OAU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.47 
_cell.angle_gamma         90 
_cell.entry_id            6OAU 
_cell.length_a            177.48 
_cell.length_b            97.25 
_cell.length_c            77.21 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OAU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,L,N 1 1 
B,D,I,J,K,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 54 1_555 A SG CYS 40 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 A SG CYS 216 A CYS 243 1_555 A SG CYS 239 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 A SG CYS 264 A CYS 291 1_555 A SG CYS 275 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 278 A CYS 305 1_555 A SG CYS 283 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 A SG CYS 418 A CYS 445 1_555 A SG CYS 438 A CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf6 B SG CYS 27 B CYS 54 1_555 B SG CYS 40 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf7 B SG CYS 216 B CYS 243 1_555 B SG CYS 239 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 B SG CYS 264 B CYS 291 1_555 B SG CYS 275 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 B SG CYS 278 B CYS 305 1_555 B SG CYS 283 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf10 B SG CYS 418 B CYS 445 1_555 B SG CYS 438 B CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf11 C SG CYS 45 C CYS 65 1_555 C SG CYS 69 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 C SG CYS 48 C CYS 68 1_555 C SG CYS 57 C CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 C SG CYS 63 C CYS 83 1_555 C SG CYS 90 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 C SG CYS 94 C CYS 114 1_555 C SG CYS 110 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf15 C SG CYS 111 C CYS 131 1_555 C SG CYS 116 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 D SG CYS 45 D CYS 65 1_555 D SG CYS 69 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf17 D SG CYS 48 D CYS 68 1_555 D SG CYS 57 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf18 D SG CYS 63 D CYS 83 1_555 D SG CYS 90 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf19 D SG CYS 94 D CYS 114 1_555 D SG CYS 110 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf20 D SG CYS 111 D CYS 131 1_555 D SG CYS 116 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A ND2 ASN 43 A ASN 70 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
covale ? covale2 A ND2 ASN 359 A ASN 386 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 B ND2 ASN 43 B ASN 70 1_555 J C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale4 B ND2 ASN 359 B ASN 386 1_555 I C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
metalc ? metalc1 A O ALA 167 A ALA 194 1_555 H CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 A O ARG 170 A ARG 197 1_555 H CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc3 A OD1 ASP 175 A ASP 202 1_555 H CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc4 A OD2 ASP 175 A ASP 202 1_555 H CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc5 B O ALA 167 B ALA 194 1_555 K CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc6 B O ARG 170 B ARG 197 1_555 K CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? 
metalc ? metalc7 B OD1 ASP 175 B ASP 202 1_555 K CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc8 B OD2 ASP 175 B ASP 202 1_555 K CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc9 K CA CA . B CA 503 1_555 M O HOH . B HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     6OAU 
_atom_sites.fract_transf_matrix[1][1]    0.005634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000342 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012975 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 501 500 NAG NAG . 
F 3 NAG A 1 502 502 NAG NAG . 
G 4 MLI A 1 503 1 MLI MLI . 
H 5 CA A 1 504 1 CA CA . 
I 3 NAG B 1 501 500 NAG NAG . 
J 3 NAG B 1 502 502 NAG NAG . 
K 5 CA B 1 503 2 CA CA . 
L 6 HOH A 1 601 37 HOH HOH . 
L 6 HOH A 2 602 38 HOH HOH . 
L 6 HOH A 3 603 51 HOH HOH . 
L 6 HOH A 4 604 83 HOH HOH . 
L 6 HOH A 5 605 26 HOH HOH . 
L 6 HOH A 6 606 50 HOH HOH . 
L 6 HOH A 7 607 52 HOH HOH . 
L 6 HOH A 8 608 60 HOH HOH . 
L 6 HOH A 9 609 69 HOH HOH . 
L 6 HOH A 10 610 49 HOH HOH . 
L 6 HOH A 11 611 17 HOH HOH . 
L 6 HOH A 12 612 79 HOH HOH . 
L 6 HOH A 13 613 48 HOH HOH . 
L 6 HOH A 14 614 77 HOH HOH . 
L 6 HOH A 15 615 41 HOH HOH . 
L 6 HOH A 16 616 33 HOH HOH . 
L 6 HOH A 17 617 23 HOH HOH . 
L 6 HOH A 18 618 68 HOH HOH . 
L 6 HOH A 19 619 55 HOH HOH . 
L 6 HOH A 20 620 46 HOH HOH . 
L 6 HOH A 21 621 54 HOH HOH . 
L 6 HOH A 22 622 9 HOH HOH . 
L 6 HOH A 23 623 4 HOH HOH . 
L 6 HOH A 24 624 74 HOH HOH . 
L 6 HOH A 25 625 16 HOH HOH . 
L 6 HOH A 26 626 78 HOH HOH . 
L 6 HOH A 27 627 66 HOH HOH . 
L 6 HOH A 28 628 56 HOH HOH . 
L 6 HOH A 29 629 6 HOH HOH . 
L 6 HOH A 30 630 65 HOH HOH . 
L 6 HOH A 31 631 47 HOH HOH . 
L 6 HOH A 32 632 32 HOH HOH . 
L 6 HOH A 33 633 30 HOH HOH . 
L 6 HOH A 34 634 76 HOH HOH . 
L 6 HOH A 35 635 10 HOH HOH . 
L 6 HOH A 36 636 3 HOH HOH . 
L 6 HOH A 37 637 75 HOH HOH . 
L 6 HOH A 38 638 35 HOH HOH . 
L 6 HOH A 39 639 29 HOH HOH . 
M 6 HOH B 1 601 85 HOH HOH . 
M 6 HOH B 2 602 43 HOH HOH . 
M 6 HOH B 3 603 28 HOH HOH . 
M 6 HOH B 4 604 70 HOH HOH . 
M 6 HOH B 5 605 58 HOH HOH . 
M 6 HOH B 6 606 24 HOH HOH . 
M 6 HOH B 7 607 42 HOH HOH . 
M 6 HOH B 8 608 61 HOH HOH . 
M 6 HOH B 9 609 25 HOH HOH . 
M 6 HOH B 10 610 44 HOH HOH . 
M 6 HOH B 11 611 8 HOH HOH . 
M 6 HOH B 12 612 59 HOH HOH . 
M 6 HOH B 13 613 40 HOH HOH . 
M 6 HOH B 14 614 63 HOH HOH . 
M 6 HOH B 15 615 86 HOH HOH . 
M 6 HOH B 16 616 53 HOH HOH . 
M 6 HOH B 17 617 45 HOH HOH . 
M 6 HOH B 18 618 67 HOH HOH . 
M 6 HOH B 19 619 15 HOH HOH . 
M 6 HOH B 20 620 62 HOH HOH . 
M 6 HOH B 21 621 27 HOH HOH . 
M 6 HOH B 22 622 2 HOH HOH . 
M 6 HOH B 23 623 20 HOH HOH . 
M 6 HOH B 24 624 19 HOH HOH . 
M 6 HOH B 25 625 34 HOH HOH . 
M 6 HOH B 26 626 84 HOH HOH . 
M 6 HOH B 27 627 36 HOH HOH . 
M 6 HOH B 28 628 5 HOH HOH . 
M 6 HOH B 29 629 64 HOH HOH . 
M 6 HOH B 30 630 73 HOH HOH . 
M 6 HOH B 31 631 71 HOH HOH . 
M 6 HOH B 32 632 57 HOH HOH . 
M 6 HOH B 33 633 18 HOH HOH . 
M 6 HOH B 34 634 14 HOH HOH . 
M 6 HOH B 35 635 31 HOH HOH . 
M 6 HOH B 36 636 72 HOH HOH . 
N 6 HOH C 1 201 39 HOH HOH . 
N 6 HOH C 2 202 80 HOH HOH . 
N 6 HOH C 3 203 13 HOH HOH . 
N 6 HOH C 4 204 11 HOH HOH . 
O 6 HOH D 1 201 81 HOH HOH . 
O 6 HOH D 2 202 12 HOH HOH . 
O 6 HOH D 3 203 82 HOH HOH . 
O 6 HOH D 4 204 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . G 4 -7.157 69.407 7.828 1 65.78 ? C1 MLI 503 A 1 
HETATM 2 C C2 MLI . . . G 4 -6.866 69.202 6.345 1 64.21 ? C2 MLI 503 A 1 
HETATM 3 C C3 MLI . . . G 4 -6.045 69.061 8.818 1 70.02 ? C3 MLI 503 A 1 
HETATM 4 O O6 MLI . . . G 4 -7.079 70.166 5.575 1 66.87 ? O6 MLI 503 A 1 
HETATM 5 O O7 MLI . . . G 4 -6.457 68.088 5.959 1 60.45 ? O7 MLI 503 A 1 
HETATM 6 O O8 MLI . . . G 4 -4.965 68.591 8.397 1 70.58 ? O8 MLI 503 A 1 
HETATM 7 O O9 MLI . . . G 4 -6.271 69.233 10.04 1 72.75 ? O9 MLI 503 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#