data_6OB2 # _model_server_result.job_id 7RZFpOxiNgwXx6rFvIzbqQ _model_server_result.datetime_utc '2024-12-13 13:48:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ob2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1502}' # _entry.id 6OB2 # _exptl.entry_id 6OB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OB2 _cell.length_a 83.728 _cell.length_b 99.736 _cell.length_c 155.514 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,M,N 1 1 C,D,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 F O1G GNP . A GNP 202 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 F O2B GNP . A GNP 202 1_555 G MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc5 G MG MG . A MG 203 1_555 M O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 G MG MG . A MG 203 1_555 M O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 C OG SER 18 C SER 17 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 C OG1 THR 36 C THR 35 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 K O1G GNP . C GNP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc10 K O2B GNP . C GNP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc11 L MG MG . C MG 202 1_555 O O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc12 L MG MG . C MG 202 1_555 O O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 237 n y N1 C5 IMD sing 238 n y N1 HN1 IMD sing 239 n n C2 N3 IMD doub 240 n y C2 H2 IMD sing 241 n n N3 C4 IMD sing 242 n y N3 HN3 IMD sing 243 n n C4 C5 IMD doub 244 n y C4 H4 IMD sing 245 n n C5 H5 IMD sing 246 n n # _atom_sites.entry_id 6OB2 _atom_sites.fract_transf_matrix[1][1] 0.011943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 201 201 GOL GOL . F 4 GNP A 1 202 1 GNP GNP . G 5 MG A 1 203 7 MG MG . H 3 GOL B 1 1501 1501 GOL GOL . I 6 IMD B 1 1502 1601 IMD IMD . J 7 CL B 1 1503 9 CL CL . K 4 GNP C 1 201 2 GNP GNP . L 5 MG C 1 202 8 MG MG . M 8 HOH A 1 301 5 HOH HOH . M 8 HOH A 2 302 1 HOH HOH . M 8 HOH A 3 303 19 HOH HOH . M 8 HOH A 4 304 16 HOH HOH . M 8 HOH A 5 305 32 HOH HOH . M 8 HOH A 6 306 38 HOH HOH . M 8 HOH A 7 307 22 HOH HOH . M 8 HOH A 8 308 40 HOH HOH . M 8 HOH A 9 309 3 HOH HOH . M 8 HOH A 10 310 15 HOH HOH . M 8 HOH A 11 311 24 HOH HOH . M 8 HOH A 12 312 7 HOH HOH . M 8 HOH A 13 313 6 HOH HOH . M 8 HOH A 14 314 29 HOH HOH . M 8 HOH A 15 315 18 HOH HOH . M 8 HOH A 16 316 17 HOH HOH . N 8 HOH B 1 1601 10 HOH HOH . N 8 HOH B 2 1602 33 HOH HOH . N 8 HOH B 3 1603 27 HOH HOH . N 8 HOH B 4 1604 37 HOH HOH . N 8 HOH B 5 1605 34 HOH HOH . N 8 HOH B 6 1606 12 HOH HOH . N 8 HOH B 7 1607 13 HOH HOH . N 8 HOH B 8 1608 23 HOH HOH . N 8 HOH B 9 1609 31 HOH HOH . N 8 HOH B 10 1610 35 HOH HOH . N 8 HOH B 11 1611 30 HOH HOH . N 8 HOH B 12 1612 11 HOH HOH . N 8 HOH B 13 1613 28 HOH HOH . O 8 HOH C 1 301 41 HOH HOH . O 8 HOH C 2 302 42 HOH HOH . O 8 HOH C 3 303 26 HOH HOH . P 8 HOH D 1 1501 14 HOH HOH . P 8 HOH D 2 1502 2 HOH HOH . P 8 HOH D 3 1503 25 HOH HOH . P 8 HOH D 4 1504 8 HOH HOH . P 8 HOH D 5 1505 4 HOH HOH . P 8 HOH D 6 1506 21 HOH HOH . P 8 HOH D 7 1507 9 HOH HOH . P 8 HOH D 8 1508 39 HOH HOH . P 8 HOH D 9 1509 36 HOH HOH . P 8 HOH D 10 1510 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . I 6 10.354 -49.831 -21.992 1 105.09 ? N1 IMD 1502 B 1 HETATM 2 C C2 IMD . . . I 6 9.024 -49.583 -22.074 1 104.21 ? C2 IMD 1502 B 1 HETATM 3 N N3 IMD . . . I 6 8.632 -48.973 -20.928 1 104.56 ? N3 IMD 1502 B 1 HETATM 4 C C4 IMD . . . I 6 9.71 -48.835 -20.118 1 103.47 ? C4 IMD 1502 B 1 HETATM 5 C C5 IMD . . . I 6 10.799 -49.378 -20.796 1 103.62 ? C5 IMD 1502 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #