data_6OB7 # _model_server_result.job_id wuMO_OqUMdAVEZx9WBb1pw _model_server_result.datetime_utc '2024-11-22 18:15:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ob7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":617}' # _entry.id 6OB7 # _exptl.entry_id 6OB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OB7 _cell.length_a 72.04 _cell.length_b 72.04 _cell.length_c 173.371 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 326 n n C10 C9 OLC doub 327 n n C10 C11 OLC sing 328 n n C9 C8 OLC sing 329 n n C17 C16 OLC sing 330 z n C11 C12 OLC sing 331 n n C8 C7 OLC sing 332 n n C24 C22 OLC sing 333 n n C24 O25 OLC sing 334 n n C16 C15 OLC sing 335 n n C12 C13 OLC sing 336 n n C7 C6 OLC sing 337 n n C15 C14 OLC sing 338 n n C13 C14 OLC sing 339 n n C6 C5 OLC sing 340 n n C5 C4 OLC sing 341 n n C4 C3 OLC sing 342 n n C3 C2 OLC sing 343 n n C2 C1 OLC sing 344 n n C21 C22 OLC sing 345 n n C21 O20 OLC sing 346 n n C1 O19 OLC doub 347 n n C1 O20 OLC sing 348 n n C22 O23 OLC sing 349 n n C18 H18 OLC sing 350 n n C18 H18A OLC sing 351 n n C18 H18B OLC sing 352 n n C10 H10 OLC sing 353 n n C9 H9 OLC sing 354 n n C17 H17 OLC sing 355 n n C17 H17A OLC sing 356 n n C11 H11 OLC sing 357 n n C11 H11A OLC sing 358 n n C8 H8 OLC sing 359 n n C8 H8A OLC sing 360 n n C24 H24 OLC sing 361 n n C24 H24A OLC sing 362 n n C16 H16 OLC sing 363 n n C16 H16A OLC sing 364 n n C12 H12 OLC sing 365 n n C12 H12A OLC sing 366 n n C7 H7 OLC sing 367 n n C7 H7A OLC sing 368 n n C15 H15 OLC sing 369 n n C15 H15A OLC sing 370 n n C13 H13 OLC sing 371 n n C13 H13A OLC sing 372 n n C6 H6 OLC sing 373 n n C6 H6A OLC sing 374 n n C14 H14 OLC sing 375 n n C14 H14A OLC sing 376 n n C5 H5 OLC sing 377 n n C5 H5A OLC sing 378 n n C4 H4 OLC sing 379 n n C4 H4A OLC sing 380 n n C3 H3 OLC sing 381 n n C3 H3A OLC sing 382 n n C2 H2 OLC sing 383 n n C2 H2A OLC sing 384 n n C21 H21 OLC sing 385 n n C21 H21A OLC sing 386 n n C22 H22 OLC sing 387 n n O25 HO25 OLC sing 388 n n O23 HO23 OLC sing 389 n n # _atom_sites.entry_id 6OB7 _atom_sites.fract_transf_matrix[1][1] 0.013881 _atom_sites.fract_transf_matrix[1][2] 0.008014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 601 601 OLC OLC . C 2 OLC A 1 602 701 OLC OLC . D 2 OLC A 1 603 801 OLC OLC . E 2 OLC A 1 604 901 OLC OLC . F 2 OLC A 1 605 1001 OLC OLC . G 2 OLC A 1 606 1101 OLC OLC . H 2 OLC A 1 607 1201 OLC OLC . I 2 OLC A 1 608 1301 OLC OLC . J 2 OLC A 1 609 1501 OLC OLC . K 2 OLC A 1 610 1601 OLC OLC . L 2 OLC A 1 611 1701 OLC OLC . M 2 OLC A 1 612 1801 OLC OLC . N 2 OLC A 1 613 1901 OLC OLC . O 2 OLC A 1 614 2001 OLC OLC . P 2 OLC A 1 615 2101 OLC OLC . Q 2 OLC A 1 616 2201 OLC OLC . R 2 OLC A 1 617 2301 OLC OLC . S 2 OLC A 1 618 2401 OLC OLC . T 3 8DZ A 1 619 2501 8DZ 8DZ . U 4 HOH A 1 701 93 HOH HOH . U 4 HOH A 2 702 29 HOH HOH . U 4 HOH A 3 703 74 HOH HOH . U 4 HOH A 4 704 45 HOH HOH . U 4 HOH A 5 705 109 HOH HOH . U 4 HOH A 6 706 9 HOH HOH . U 4 HOH A 7 707 83 HOH HOH . U 4 HOH A 8 708 100 HOH HOH . U 4 HOH A 9 709 21 HOH HOH . U 4 HOH A 10 710 101 HOH HOH . U 4 HOH A 11 711 99 HOH HOH . U 4 HOH A 12 712 92 HOH HOH . U 4 HOH A 13 713 94 HOH HOH . U 4 HOH A 14 714 36 HOH HOH . U 4 HOH A 15 715 2 HOH HOH . U 4 HOH A 16 716 79 HOH HOH . U 4 HOH A 17 717 72 HOH HOH . U 4 HOH A 18 718 111 HOH HOH . U 4 HOH A 19 719 104 HOH HOH . U 4 HOH A 20 720 112 HOH HOH . U 4 HOH A 21 721 4 HOH HOH . U 4 HOH A 22 722 7 HOH HOH . U 4 HOH A 23 723 16 HOH HOH . U 4 HOH A 24 724 103 HOH HOH . U 4 HOH A 25 725 17 HOH HOH . U 4 HOH A 26 726 8 HOH HOH . U 4 HOH A 27 727 11 HOH HOH . U 4 HOH A 28 728 108 HOH HOH . U 4 HOH A 29 729 90 HOH HOH . U 4 HOH A 30 730 15 HOH HOH . U 4 HOH A 31 731 82 HOH HOH . U 4 HOH A 32 732 81 HOH HOH . U 4 HOH A 33 733 22 HOH HOH . U 4 HOH A 34 734 40 HOH HOH . U 4 HOH A 35 735 14 HOH HOH . U 4 HOH A 36 736 31 HOH HOH . U 4 HOH A 37 737 85 HOH HOH . U 4 HOH A 38 738 97 HOH HOH . U 4 HOH A 39 739 20 HOH HOH . U 4 HOH A 40 740 19 HOH HOH . U 4 HOH A 41 741 80 HOH HOH . U 4 HOH A 42 742 106 HOH HOH . U 4 HOH A 43 743 110 HOH HOH . U 4 HOH A 44 744 3 HOH HOH . U 4 HOH A 45 745 1 HOH HOH . U 4 HOH A 46 746 96 HOH HOH . U 4 HOH A 47 747 34 HOH HOH . U 4 HOH A 48 748 18 HOH HOH . U 4 HOH A 49 749 10 HOH HOH . U 4 HOH A 50 750 51 HOH HOH . U 4 HOH A 51 751 24 HOH HOH . U 4 HOH A 52 752 84 HOH HOH . U 4 HOH A 53 753 37 HOH HOH . U 4 HOH A 54 754 107 HOH HOH . U 4 HOH A 55 755 33 HOH HOH . U 4 HOH A 56 756 95 HOH HOH . U 4 HOH A 57 757 102 HOH HOH . U 4 HOH A 58 758 98 HOH HOH . U 4 HOH A 59 759 88 HOH HOH . U 4 HOH A 60 760 89 HOH HOH . U 4 HOH A 61 761 87 HOH HOH . U 4 HOH A 62 762 105 HOH HOH . U 4 HOH A 63 763 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . R 2 -34.729 -37.917 25.996 1 38.97 ? C10 OLC 617 A 1 HETATM 2 C C9 OLC . . . R 2 -34.266 -37.754 27.225 1 31.51 ? C9 OLC 617 A 1 HETATM 3 C C11 OLC . . . R 2 -35.938 -37.12 25.499 1 32.15 ? C11 OLC 617 A 1 HETATM 4 C C8 OLC . . . R 2 -34.925 -36.758 28.18 1 27.33 ? C8 OLC 617 A 1 HETATM 5 C C12 OLC . . . R 2 -35.917 -37.01 23.976 1 41.2 ? C12 OLC 617 A 1 HETATM 6 C C7 OLC . . . R 2 -34.468 -36.992 29.619 1 39.09 ? C7 OLC 617 A 1 HETATM 7 C C13 OLC . . . R 2 -37.187 -36.294 23.517 1 36.06 ? C13 OLC 617 A 1 HETATM 8 C C6 OLC . . . R 2 -35.597 -36.591 30.569 1 40.84 ? C6 OLC 617 A 1 HETATM 9 C C5 OLC . . . R 2 -35.048 -35.746 31.717 1 37.66 ? C5 OLC 617 A 1 HETATM 10 C C4 OLC . . . R 2 -36.194 -35.369 32.655 1 36.2 ? C4 OLC 617 A 1 HETATM 11 C C3 OLC . . . R 2 -35.64 -35.059 34.044 1 31.97 ? C3 OLC 617 A 1 HETATM 12 H H10 OLC . . . R 2 -34.296 -38.55 25.402 1 38.97 ? H10 OLC 617 A 1 HETATM 13 H H9 OLC . . . R 2 -33.501 -38.271 27.523 1 31.51 ? H9 OLC 617 A 1 HETATM 14 H H11 OLC . . . R 2 -35.932 -36.234 25.893 1 32.15 ? H11 OLC 617 A 1 HETATM 15 H H11A OLC . . . R 2 -36.757 -37.552 25.786 1 32.15 ? H11A OLC 617 A 1 HETATM 16 H H8 OLC . . . R 2 -35.89 -36.843 28.126 1 27.33 ? H8 OLC 617 A 1 HETATM 17 H H8A OLC . . . R 2 -34.705 -35.853 27.911 1 27.33 ? H8A OLC 617 A 1 HETATM 18 H H12 OLC . . . R 2 -35.865 -37.892 23.576 1 41.2 ? H12 OLC 617 A 1 HETATM 19 H H12A OLC . . . R 2 -35.132 -36.52 23.685 1 41.2 ? H12A OLC 617 A 1 HETATM 20 H H7 OLC . . . R 2 -33.671 -36.472 29.807 1 39.09 ? H7 OLC 617 A 1 HETATM 21 H H7A OLC . . . R 2 -34.235 -37.925 29.75 1 39.09 ? H7A OLC 617 A 1 HETATM 22 H H6 OLC . . . R 2 -36.029 -37.385 30.921 1 40.84 ? H6 OLC 617 A 1 HETATM 23 H H6A OLC . . . R 2 -36.273 -36.091 30.085 1 40.84 ? H6A OLC 617 A 1 HETATM 24 H H5 OLC . . . R 2 -34.623 -34.946 31.37 1 37.66 ? H5 OLC 617 A 1 HETATM 25 H H5A OLC . . . R 2 -34.369 -36.241 32.201 1 37.66 ? H5A OLC 617 A 1 HETATM 26 H H4 OLC . . . R 2 -36.834 -36.096 32.707 1 36.2 ? H4 OLC 617 A 1 HETATM 27 H H4A OLC . . . R 2 -36.669 -34.598 32.307 1 36.2 ? H4A OLC 617 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #