data_6OB8 # _model_server_result.job_id Y1DM4FYhDRGorYD5oLhF6w _model_server_result.datetime_utc '2024-10-10 16:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ob8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6OB8 # _exptl.entry_id 6OB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OB8 _cell.length_a 72.059 _cell.length_b 72.059 _cell.length_c 253.804 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 201 A CYS 201 1_555 A SG CYS 274 A CYS 274 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.98 ? disulf ? disulf2 A SG CYS 201 A CYS 201 1_555 A SG CYS 274 A CYS 274 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 241 A CYS 241 1_555 C CAC CYC . A CYC 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.667 ? covale ? covale2 A SG CYS 241 A CYS 241 1_555 C CAC CYC . A CYC 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.682 ? covale ? covale3 B SG CYS 241 B CYS 241 1_555 F CAC CYC . B CYC 401 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.668 ? covale ? covale4 B SG CYS 241 B CYS 241 1_555 F CAC CYC . B CYC 401 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.667 ? metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 D MG MG . A MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A OD1 ASP 13 A ASP 13 1_555 D MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc3 A OD2 ASP 13 A ASP 13 1_555 D MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc4 A OD2 ASP 59 A ASP 59 1_555 D MG MG . A MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 A OD2 ASP 59 A ASP 59 1_555 D MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 D MG MG . A MG 402 1_555 I O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc7 D MG MG . A MG 402 1_555 I O HOH . A HOH 540 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 D MG MG . A MG 402 1_555 I O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc9 D MG MG . A MG 402 1_555 I O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc10 E MG MG . A MG 403 1_555 I O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc11 E MG MG . A MG 403 1_555 I O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc12 E MG MG . A MG 403 1_555 I O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc13 E MG MG . A MG 403 1_555 J O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc14 E MG MG . A MG 403 1_555 J O HOH . B HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc15 E MG MG . A MG 403 1_555 J O HOH . B HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc16 I O HOH . A HOH 507 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc17 I O HOH . A HOH 523 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc18 I O HOH . A HOH 562 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc19 B OD1 ASP 13 B ASP 13 1_555 G MG MG . B MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc20 B OD1 ASP 13 B ASP 13 1_555 G MG MG . B MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc21 B OD2 ASP 59 B ASP 59 1_555 G MG MG . B MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc22 B OD2 ASP 59 B ASP 59 1_555 G MG MG . B MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc23 B O ARG 61 B ARG 61 1_555 G MG MG . B MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc24 B O ARG 61 B ARG 61 1_555 G MG MG . B MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc25 G MG MG . B MG 402 1_555 J O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc26 G MG MG . B MG 402 1_555 J O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc27 G MG MG . B MG 402 1_555 J O HOH . B HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc28 H MG MG . B MG 403 1_555 J O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc29 H MG MG . B MG 403 1_555 J O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OB8 _atom_sites.fract_transf_matrix[1][1] 0.013878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYC A 1 401 900 CYC CYC . D 3 MG A 1 402 1 MG MG . E 3 MG A 1 403 4 MG MG . F 2 CYC B 1 401 900 CYC CYC . G 3 MG B 1 402 2 MG MG . H 3 MG B 1 403 3 MG MG . I 4 HOH A 1 501 14 HOH HOH . I 4 HOH A 2 502 22 HOH HOH . I 4 HOH A 3 503 17 HOH HOH . I 4 HOH A 4 504 57 HOH HOH . I 4 HOH A 5 505 13 HOH HOH . I 4 HOH A 6 506 81 HOH HOH . I 4 HOH A 7 507 103 HOH HOH . I 4 HOH A 8 508 101 HOH HOH . I 4 HOH A 9 509 52 HOH HOH . I 4 HOH A 10 510 1 HOH HOH . I 4 HOH A 11 511 96 HOH HOH . I 4 HOH A 12 512 135 HOH HOH . I 4 HOH A 13 513 83 HOH HOH . I 4 HOH A 14 514 67 HOH HOH . I 4 HOH A 15 515 35 HOH HOH . I 4 HOH A 16 516 21 HOH HOH . I 4 HOH A 17 517 11 HOH HOH . I 4 HOH A 18 518 27 HOH HOH . I 4 HOH A 19 519 94 HOH HOH . I 4 HOH A 20 520 39 HOH HOH . I 4 HOH A 21 521 102 HOH HOH . I 4 HOH A 22 522 16 HOH HOH . I 4 HOH A 23 523 33 HOH HOH . I 4 HOH A 24 524 65 HOH HOH . I 4 HOH A 25 525 105 HOH HOH . I 4 HOH A 26 526 48 HOH HOH . I 4 HOH A 27 527 131 HOH HOH . I 4 HOH A 28 528 26 HOH HOH . I 4 HOH A 29 529 58 HOH HOH . I 4 HOH A 30 530 116 HOH HOH . I 4 HOH A 31 531 64 HOH HOH . I 4 HOH A 32 532 133 HOH HOH . I 4 HOH A 33 533 12 HOH HOH . I 4 HOH A 34 534 40 HOH HOH . I 4 HOH A 35 535 38 HOH HOH . I 4 HOH A 36 536 84 HOH HOH . I 4 HOH A 37 537 123 HOH HOH . I 4 HOH A 38 538 20 HOH HOH . I 4 HOH A 39 539 128 HOH HOH . I 4 HOH A 40 540 3 HOH HOH . I 4 HOH A 41 541 61 HOH HOH . I 4 HOH A 42 542 36 HOH HOH . I 4 HOH A 43 543 23 HOH HOH . I 4 HOH A 44 544 118 HOH HOH . I 4 HOH A 45 545 34 HOH HOH . I 4 HOH A 46 546 4 HOH HOH . I 4 HOH A 47 547 32 HOH HOH . I 4 HOH A 48 548 46 HOH HOH . I 4 HOH A 49 549 139 HOH HOH . I 4 HOH A 50 550 2 HOH HOH . I 4 HOH A 51 551 53 HOH HOH . I 4 HOH A 52 552 54 HOH HOH . I 4 HOH A 53 553 55 HOH HOH . I 4 HOH A 54 554 25 HOH HOH . I 4 HOH A 55 555 132 HOH HOH . I 4 HOH A 56 556 76 HOH HOH . I 4 HOH A 57 557 122 HOH HOH . I 4 HOH A 58 558 37 HOH HOH . I 4 HOH A 59 559 85 HOH HOH . I 4 HOH A 60 560 51 HOH HOH . I 4 HOH A 61 561 49 HOH HOH . I 4 HOH A 62 562 28 HOH HOH . I 4 HOH A 63 563 126 HOH HOH . I 4 HOH A 64 564 77 HOH HOH . I 4 HOH A 65 565 106 HOH HOH . I 4 HOH A 66 566 119 HOH HOH . I 4 HOH A 67 567 78 HOH HOH . I 4 HOH A 68 568 69 HOH HOH . I 4 HOH A 69 569 59 HOH HOH . I 4 HOH A 70 570 91 HOH HOH . I 4 HOH A 71 571 87 HOH HOH . I 4 HOH A 72 572 82 HOH HOH . I 4 HOH A 73 573 99 HOH HOH . I 4 HOH A 74 574 97 HOH HOH . I 4 HOH A 75 575 68 HOH HOH . I 4 HOH A 76 576 95 HOH HOH . J 4 HOH B 1 501 47 HOH HOH . J 4 HOH B 2 502 8 HOH HOH . J 4 HOH B 3 503 72 HOH HOH . J 4 HOH B 4 504 10 HOH HOH . J 4 HOH B 5 505 19 HOH HOH . J 4 HOH B 6 506 6 HOH HOH . J 4 HOH B 7 507 80 HOH HOH . J 4 HOH B 8 508 100 HOH HOH . J 4 HOH B 9 509 9 HOH HOH . J 4 HOH B 10 510 113 HOH HOH . J 4 HOH B 11 511 110 HOH HOH . J 4 HOH B 12 512 112 HOH HOH . J 4 HOH B 13 513 136 HOH HOH . J 4 HOH B 14 514 88 HOH HOH . J 4 HOH B 15 515 63 HOH HOH . J 4 HOH B 16 516 114 HOH HOH . J 4 HOH B 17 517 140 HOH HOH . J 4 HOH B 18 518 120 HOH HOH . J 4 HOH B 19 519 74 HOH HOH . J 4 HOH B 20 520 111 HOH HOH . J 4 HOH B 21 521 90 HOH HOH . J 4 HOH B 22 522 134 HOH HOH . J 4 HOH B 23 523 43 HOH HOH . J 4 HOH B 24 524 42 HOH HOH . J 4 HOH B 25 525 24 HOH HOH . J 4 HOH B 26 526 5 HOH HOH . J 4 HOH B 27 527 15 HOH HOH . J 4 HOH B 28 528 115 HOH HOH . J 4 HOH B 29 529 18 HOH HOH . J 4 HOH B 30 530 7 HOH HOH . J 4 HOH B 31 531 107 HOH HOH . J 4 HOH B 32 532 93 HOH HOH . J 4 HOH B 33 533 73 HOH HOH . J 4 HOH B 34 534 125 HOH HOH . J 4 HOH B 35 535 30 HOH HOH . J 4 HOH B 36 536 29 HOH HOH . J 4 HOH B 37 537 75 HOH HOH . J 4 HOH B 38 538 138 HOH HOH . J 4 HOH B 39 539 56 HOH HOH . J 4 HOH B 40 540 60 HOH HOH . J 4 HOH B 41 541 92 HOH HOH . J 4 HOH B 42 542 121 HOH HOH . J 4 HOH B 43 543 89 HOH HOH . J 4 HOH B 44 544 86 HOH HOH . J 4 HOH B 45 545 66 HOH HOH . J 4 HOH B 46 546 71 HOH HOH . J 4 HOH B 47 547 50 HOH HOH . J 4 HOH B 48 548 31 HOH HOH . J 4 HOH B 49 549 130 HOH HOH . J 4 HOH B 50 550 127 HOH HOH . J 4 HOH B 51 551 98 HOH HOH . J 4 HOH B 52 552 41 HOH HOH . J 4 HOH B 53 553 70 HOH HOH . J 4 HOH B 54 554 108 HOH HOH . J 4 HOH B 55 555 79 HOH HOH . J 4 HOH B 56 556 124 HOH HOH . J 4 HOH B 57 557 45 HOH HOH . J 4 HOH B 58 558 44 HOH HOH . J 4 HOH B 59 559 62 HOH HOH . J 4 HOH B 60 560 129 HOH HOH . J 4 HOH B 61 561 137 HOH HOH . J 4 HOH B 62 562 109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.516 _atom_site.Cartn_y -13.49 _atom_site.Cartn_z 24.314 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #