data_6OBN # _model_server_result.job_id xMh6d9Rx1kPtkthhgYkeJQ _model_server_result.datetime_utc '2024-10-19 03:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6obn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 6OBN # _exptl.entry_id 6OBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OBN _cell.length_a 94.147 _cell.length_b 94.147 _cell.length_c 545.819 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,O,P,Q,R,S,V,X 1 1 B,D,L,M,N,T,U,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 L N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 97 A ASP 92 1_555 G FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 A OD1 ASN 129 A ASN 124 1_555 G FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A NE2 HIS 178 A HIS 173 1_555 G FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A ND1 HIS 253 A HIS 248 1_555 G FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 E O4 PO4 . A PO4 401 1_555 G FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc6 G FE FE . A FE 403 1_555 V O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 B OD2 ASP 97 B ASP 92 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc8 B OD1 ASN 129 B ASN 124 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 B NE2 HIS 178 B HIS 173 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 B ND1 HIS 253 B HIS 248 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 L O3 PO4 . B PO4 401 1_555 M FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 M FE FE . B FE 402 1_555 W O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 281 n n P O2 PO4 sing 282 n n P O3 PO4 sing 283 n n P O4 PO4 sing 284 n n # _atom_sites.entry_id 6OBN _atom_sites.fract_transf_matrix[1][1] 0.010622 _atom_sites.fract_transf_matrix[1][2] 0.006132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 401 6 PO4 PO4 . F 3 PO4 A 1 402 8 PO4 PO4 . G 4 FE A 1 403 4 FE FE . H 5 CL A 1 404 1 CL CL . I 5 CL A 1 405 3 CL CL . J 6 MPD A 1 406 1 MPD MPD . K 6 MPD A 1 407 2 MPD MPD . L 3 PO4 B 1 401 7 PO4 PO4 . M 4 FE B 1 402 3 FE FE . N 5 CL B 1 403 2 CL CL . O 3 PO4 C 1 401 1 PO4 PO4 . P 3 PO4 C 1 402 4 PO4 PO4 . Q 3 PO4 C 1 403 5 PO4 PO4 . R 6 MPD C 1 404 4 MPD MPD . S 6 MPD C 1 405 5 MPD MPD . T 3 PO4 D 1 401 2 PO4 PO4 . U 3 PO4 D 1 402 3 PO4 PO4 . V 7 HOH A 1 501 6 HOH HOH . V 7 HOH A 2 502 88 HOH HOH . V 7 HOH A 3 503 29 HOH HOH . V 7 HOH A 4 504 25 HOH HOH . V 7 HOH A 5 505 22 HOH HOH . V 7 HOH A 6 506 68 HOH HOH . V 7 HOH A 7 507 13 HOH HOH . V 7 HOH A 8 508 16 HOH HOH . V 7 HOH A 9 509 57 HOH HOH . V 7 HOH A 10 510 8 HOH HOH . V 7 HOH A 11 511 10 HOH HOH . V 7 HOH A 12 512 38 HOH HOH . V 7 HOH A 13 513 84 HOH HOH . V 7 HOH A 14 514 85 HOH HOH . V 7 HOH A 15 515 41 HOH HOH . V 7 HOH A 16 516 15 HOH HOH . V 7 HOH A 17 517 20 HOH HOH . V 7 HOH A 18 518 43 HOH HOH . V 7 HOH A 19 519 90 HOH HOH . V 7 HOH A 20 520 89 HOH HOH . W 7 HOH B 1 501 72 HOH HOH . W 7 HOH B 2 502 59 HOH HOH . W 7 HOH B 3 503 73 HOH HOH . W 7 HOH B 4 504 51 HOH HOH . W 7 HOH B 5 505 12 HOH HOH . W 7 HOH B 6 506 23 HOH HOH . W 7 HOH B 7 507 86 HOH HOH . W 7 HOH B 8 508 56 HOH HOH . W 7 HOH B 9 509 21 HOH HOH . W 7 HOH B 10 510 76 HOH HOH . W 7 HOH B 11 511 58 HOH HOH . W 7 HOH B 12 512 87 HOH HOH . X 7 HOH C 1 501 53 HOH HOH . X 7 HOH C 2 502 33 HOH HOH . X 7 HOH C 3 503 27 HOH HOH . X 7 HOH C 4 504 79 HOH HOH . X 7 HOH C 5 505 82 HOH HOH . X 7 HOH C 6 506 60 HOH HOH . X 7 HOH C 7 507 44 HOH HOH . X 7 HOH C 8 508 74 HOH HOH . X 7 HOH C 9 509 83 HOH HOH . X 7 HOH C 10 510 78 HOH HOH . X 7 HOH C 11 511 80 HOH HOH . X 7 HOH C 12 512 40 HOH HOH . X 7 HOH C 13 513 39 HOH HOH . Y 7 HOH D 1 501 31 HOH HOH . Y 7 HOH D 2 502 19 HOH HOH . Y 7 HOH D 3 503 42 HOH HOH . Y 7 HOH D 4 504 77 HOH HOH . Y 7 HOH D 5 505 3 HOH HOH . Y 7 HOH D 6 506 81 HOH HOH . Y 7 HOH D 7 507 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . O 3 19.672 46.645 1.382 1 85.49 ? P PO4 401 C 1 HETATM 2 O O1 PO4 . . . O 3 20.64 46.757 0.222 1 67.97 ? O1 PO4 401 C 1 HETATM 3 O O2 PO4 . . . O 3 18.303 47.087 0.914 1 73.69 ? O2 PO4 401 C 1 HETATM 4 O O3 PO4 . . . O 3 19.601 45.214 1.86 1 83.43 ? O3 PO4 401 C 1 HETATM 5 O O4 PO4 . . . O 3 20.131 47.498 2.542 1 62.87 ? O4 PO4 401 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #