data_6OBY # _model_server_result.job_id rANwnnXXsRcK6hQyTSKhIA _model_server_result.datetime_utc '2024-11-22 05:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6OBY # _exptl.entry_id 6OBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.09 _cell.angle_gamma 90 _cell.entry_id 6OBY _cell.length_a 51.44 _cell.length_b 67.682 _cell.length_c 79.403 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 23 A VAL 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C MSE 24 A MSE 24 1_555 A N SER 25 A SER 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C VAL 92 A VAL 92 1_555 A N MSE 93 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MSE 93 A MSE 93 1_555 A N SER 94 A SER 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C GLY 115 A GLY 115 1_555 A N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 A C MSE 116 A MSE 116 1_555 A N ILE 117 A ILE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C VAL 147 A VAL 147 1_555 A N MSE 148 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C MSE 148 A MSE 148 1_555 A N GLN 149 A GLN 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 A C THR 175 A THR 175 1_555 A N MSE 176 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale10 A C MSE 176 A MSE 176 1_555 A N ALA 177 A ALA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 A C ASN 190 A ASN 190 1_555 A N MSE 191 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 191 A MSE 191 1_555 A N ALA 192 A ALA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C VAL 23 B VAL 23 1_555 B N MSE 24 B MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale14 B C MSE 24 B MSE 24 1_555 B N SER 25 B SER 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 B C VAL 92 B VAL 92 1_555 B N MSE 93 B MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 B C MSE 93 B MSE 93 1_555 B N SER 94 B SER 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 B C GLY 115 B GLY 115 1_555 B N MSE 116 B MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 B C MSE 116 B MSE 116 1_555 B N ILE 117 B ILE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale19 B C VAL 147 B VAL 147 1_555 B N MSE 148 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MSE 148 B MSE 148 1_555 B N GLN 149 B GLN 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale21 B C THR 175 B THR 175 1_555 B N MSE 176 B MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale22 B C MSE 176 B MSE 176 1_555 B N ALA 177 B ALA 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale23 B C ASN 190 B ASN 190 1_555 B N MSE 191 B MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 B C MSE 191 B MSE 191 1_555 B N ALA 192 B ALA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OBY _atom_sites.fract_transf_matrix[1][1] 0.01944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 3 CO A 1 302 1 CO CO . E 2 ADP B 1 301 301 ADP ADP . F 4 HOH A 1 401 275 HOH HOH . F 4 HOH A 2 402 277 HOH HOH . F 4 HOH A 3 403 271 HOH HOH . F 4 HOH A 4 404 274 HOH HOH . G 4 HOH B 1 401 270 HOH HOH . G 4 HOH B 2 402 271 HOH HOH . G 4 HOH B 3 403 275 HOH HOH . G 4 HOH B 4 404 274 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.78 _atom_site.Cartn_y -13.909 _atom_site.Cartn_z 19.961 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #