data_6OCF # _model_server_result.job_id mVPDBKsQOIzSCeBNS5u4SQ _model_server_result.datetime_utc '2024-11-08 03:56:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ocf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6OCF # _exptl.entry_id 6OCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OCF _cell.length_a 100.558 _cell.length_b 100.558 _cell.length_c 206.73 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 19 A ARG 76 1_555 A N MSE 20 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 20 A MSE 77 1_555 A N TRP 21 A TRP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A C LEU 96 A LEU 153 1_555 A N MSE 97 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 97 A MSE 154 1_555 A N ASP 98 A ASP 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C GLU 102 A GLU 159 1_555 A N MSE 103 A MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 103 A MSE 160 1_555 A N THR 104 A THR 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C SER 125 A SER 182 1_555 A N MSE 126 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 126 A MSE 183 1_555 A N PRO 127 A PRO 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale9 A C GLY 162 A GLY 219 1_555 A N MSE 163 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C MSE 163 A MSE 220 1_555 A N SER 164 A SER 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C LEU 169 A LEU 226 1_555 A N MSE 170 A MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 A C MSE 170 A MSE 227 1_555 A N TYR 171 A TYR 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 A C ASP 243 A ASP 300 1_555 A N MSE 244 A MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 244 A MSE 301 1_555 A N ARG 245 A ARG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 B C VAL 28 B VAL 45 1_555 B N MSE 29 B MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 B C MSE 29 B MSE 46 1_555 B N THR 30 B THR 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 B C GLN 43 B GLN 60 1_555 B N MSE 44 B MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale18 B C MSE 44 B MSE 61 1_555 B N GLN 45 B GLN 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6OCF _atom_sites.fract_transf_matrix[1][1] 0.009945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 4 CL A 1 402 1 CL CL . E 5 HOH A 1 501 129 HOH HOH . E 5 HOH A 2 502 36 HOH HOH . E 5 HOH A 3 503 13 HOH HOH . E 5 HOH A 4 504 170 HOH HOH . E 5 HOH A 5 505 125 HOH HOH . E 5 HOH A 6 506 72 HOH HOH . E 5 HOH A 7 507 32 HOH HOH . E 5 HOH A 8 508 14 HOH HOH . E 5 HOH A 9 509 33 HOH HOH . E 5 HOH A 10 510 56 HOH HOH . E 5 HOH A 11 511 107 HOH HOH . E 5 HOH A 12 512 163 HOH HOH . E 5 HOH A 13 513 4 HOH HOH . E 5 HOH A 14 514 96 HOH HOH . E 5 HOH A 15 515 29 HOH HOH . E 5 HOH A 16 516 132 HOH HOH . E 5 HOH A 17 517 3 HOH HOH . E 5 HOH A 18 518 31 HOH HOH . E 5 HOH A 19 519 26 HOH HOH . E 5 HOH A 20 520 45 HOH HOH . E 5 HOH A 21 521 123 HOH HOH . E 5 HOH A 22 522 8 HOH HOH . E 5 HOH A 23 523 76 HOH HOH . E 5 HOH A 24 524 46 HOH HOH . E 5 HOH A 25 525 7 HOH HOH . E 5 HOH A 26 526 55 HOH HOH . E 5 HOH A 27 527 1 HOH HOH . E 5 HOH A 28 528 53 HOH HOH . E 5 HOH A 29 529 77 HOH HOH . E 5 HOH A 30 530 172 HOH HOH . E 5 HOH A 31 531 50 HOH HOH . E 5 HOH A 32 532 24 HOH HOH . E 5 HOH A 33 533 62 HOH HOH . E 5 HOH A 34 534 120 HOH HOH . E 5 HOH A 35 535 2 HOH HOH . E 5 HOH A 36 536 126 HOH HOH . E 5 HOH A 37 537 90 HOH HOH . E 5 HOH A 38 538 61 HOH HOH . E 5 HOH A 39 539 69 HOH HOH . E 5 HOH A 40 540 12 HOH HOH . E 5 HOH A 41 541 21 HOH HOH . E 5 HOH A 42 542 75 HOH HOH . E 5 HOH A 43 543 28 HOH HOH . E 5 HOH A 44 544 116 HOH HOH . E 5 HOH A 45 545 11 HOH HOH . E 5 HOH A 46 546 44 HOH HOH . E 5 HOH A 47 547 167 HOH HOH . E 5 HOH A 48 548 5 HOH HOH . E 5 HOH A 49 549 95 HOH HOH . E 5 HOH A 50 550 20 HOH HOH . E 5 HOH A 51 551 92 HOH HOH . E 5 HOH A 52 552 39 HOH HOH . E 5 HOH A 53 553 133 HOH HOH . E 5 HOH A 54 554 156 HOH HOH . E 5 HOH A 55 555 139 HOH HOH . E 5 HOH A 56 556 51 HOH HOH . E 5 HOH A 57 557 52 HOH HOH . E 5 HOH A 58 558 16 HOH HOH . E 5 HOH A 59 559 58 HOH HOH . E 5 HOH A 60 560 160 HOH HOH . E 5 HOH A 61 561 104 HOH HOH . E 5 HOH A 62 562 9 HOH HOH . E 5 HOH A 63 563 43 HOH HOH . E 5 HOH A 64 564 23 HOH HOH . E 5 HOH A 65 565 109 HOH HOH . E 5 HOH A 66 566 110 HOH HOH . E 5 HOH A 67 567 67 HOH HOH . E 5 HOH A 68 568 112 HOH HOH . E 5 HOH A 69 569 97 HOH HOH . E 5 HOH A 70 570 17 HOH HOH . E 5 HOH A 71 571 143 HOH HOH . E 5 HOH A 72 572 93 HOH HOH . E 5 HOH A 73 573 79 HOH HOH . E 5 HOH A 74 574 106 HOH HOH . E 5 HOH A 75 575 6 HOH HOH . E 5 HOH A 76 576 78 HOH HOH . E 5 HOH A 77 577 119 HOH HOH . E 5 HOH A 78 578 30 HOH HOH . E 5 HOH A 79 579 73 HOH HOH . E 5 HOH A 80 580 71 HOH HOH . E 5 HOH A 81 581 18 HOH HOH . E 5 HOH A 82 582 124 HOH HOH . E 5 HOH A 83 583 108 HOH HOH . E 5 HOH A 84 584 42 HOH HOH . E 5 HOH A 85 585 22 HOH HOH . E 5 HOH A 86 586 147 HOH HOH . E 5 HOH A 87 587 88 HOH HOH . E 5 HOH A 88 588 68 HOH HOH . E 5 HOH A 89 589 144 HOH HOH . E 5 HOH A 90 590 49 HOH HOH . E 5 HOH A 91 591 15 HOH HOH . E 5 HOH A 92 592 128 HOH HOH . E 5 HOH A 93 593 173 HOH HOH . E 5 HOH A 94 594 127 HOH HOH . E 5 HOH A 95 595 59 HOH HOH . E 5 HOH A 96 596 158 HOH HOH . E 5 HOH A 97 597 41 HOH HOH . E 5 HOH A 98 598 57 HOH HOH . E 5 HOH A 99 599 89 HOH HOH . E 5 HOH A 100 600 70 HOH HOH . E 5 HOH A 101 601 113 HOH HOH . E 5 HOH A 102 602 166 HOH HOH . E 5 HOH A 103 603 115 HOH HOH . E 5 HOH A 104 604 153 HOH HOH . E 5 HOH A 105 605 117 HOH HOH . E 5 HOH A 106 606 65 HOH HOH . E 5 HOH A 107 607 171 HOH HOH . E 5 HOH A 108 608 151 HOH HOH . E 5 HOH A 109 609 168 HOH HOH . E 5 HOH A 110 610 121 HOH HOH . E 5 HOH A 111 611 114 HOH HOH . E 5 HOH A 112 612 60 HOH HOH . E 5 HOH A 113 613 118 HOH HOH . E 5 HOH A 114 614 101 HOH HOH . E 5 HOH A 115 615 87 HOH HOH . E 5 HOH A 116 616 83 HOH HOH . E 5 HOH A 117 617 94 HOH HOH . E 5 HOH A 118 618 35 HOH HOH . E 5 HOH A 119 619 148 HOH HOH . E 5 HOH A 120 620 100 HOH HOH . E 5 HOH A 121 621 63 HOH HOH . E 5 HOH A 122 622 103 HOH HOH . E 5 HOH A 123 623 64 HOH HOH . E 5 HOH A 124 624 134 HOH HOH . E 5 HOH A 125 625 146 HOH HOH . E 5 HOH A 126 626 81 HOH HOH . E 5 HOH A 127 627 157 HOH HOH . E 5 HOH A 128 628 162 HOH HOH . E 5 HOH A 129 629 85 HOH HOH . E 5 HOH A 130 630 74 HOH HOH . E 5 HOH A 131 631 136 HOH HOH . E 5 HOH A 132 632 105 HOH HOH . E 5 HOH A 133 633 66 HOH HOH . E 5 HOH A 134 634 165 HOH HOH . E 5 HOH A 135 635 130 HOH HOH . E 5 HOH A 136 636 99 HOH HOH . E 5 HOH A 137 637 102 HOH HOH . F 5 HOH B 1 101 152 HOH HOH . F 5 HOH B 2 102 80 HOH HOH . F 5 HOH B 3 103 149 HOH HOH . F 5 HOH B 4 104 98 HOH HOH . F 5 HOH B 5 105 34 HOH HOH . F 5 HOH B 6 106 10 HOH HOH . F 5 HOH B 7 107 154 HOH HOH . F 5 HOH B 8 108 38 HOH HOH . F 5 HOH B 9 109 27 HOH HOH . F 5 HOH B 10 110 19 HOH HOH . F 5 HOH B 11 111 25 HOH HOH . F 5 HOH B 12 112 91 HOH HOH . F 5 HOH B 13 113 155 HOH HOH . F 5 HOH B 14 114 142 HOH HOH . F 5 HOH B 15 115 48 HOH HOH . F 5 HOH B 16 116 37 HOH HOH . F 5 HOH B 17 117 82 HOH HOH . F 5 HOH B 18 118 140 HOH HOH . F 5 HOH B 19 119 169 HOH HOH . F 5 HOH B 20 120 150 HOH HOH . F 5 HOH B 21 121 164 HOH HOH . F 5 HOH B 22 122 47 HOH HOH . F 5 HOH B 23 123 111 HOH HOH . F 5 HOH B 24 124 84 HOH HOH . F 5 HOH B 25 125 40 HOH HOH . F 5 HOH B 26 126 86 HOH HOH . F 5 HOH B 27 127 138 HOH HOH . F 5 HOH B 28 128 137 HOH HOH . F 5 HOH B 29 129 141 HOH HOH . F 5 HOH B 30 130 54 HOH HOH . F 5 HOH B 31 131 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 117.902 103.341 7.128 1 31.44 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 117.734 102.865 8.396 1 23.91 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 118.917 102.42 6.455 1 35.56 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 118.363 101.274 5.933 1 20.87 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 119.555 103.311 5.359 1 41.24 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 120.927 103.249 5.617 1 31.28 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . C 3 117.078 103.346 6.616 1 37.85 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . C 3 118.231 104.254 7.11 1 37.85 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . C 3 117.453 103.517 8.864 1 28.81 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . C 3 119.565 102.105 7.104 1 42.79 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . C 3 117.784 101.504 5.356 1 25.16 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . C 3 119.305 102.98 4.482 1 49.6 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . C 3 119.186 104.206 5.41 1 49.6 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . C 3 121.16 104.021 5.885 1 37.66 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 14 #