data_6OCJ
#
_model_server_result.job_id            BVFs7doVjASITG25b_jepA 
_model_server_result.datetime_utc      '2024-11-06 02:00:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ocj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6OCJ 
#
_exptl.entry_id    6OCJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6OCJ 
_cell.length_a            95.261 
_cell.length_b            95.261 
_cell.length_c            144.533 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OCJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 255 n n 
C1 C3 MLI sing 256 n n 
C1 H11 MLI sing 257 n n 
C1 H12 MLI sing 258 n n 
C2 O6 MLI doub 259 n n 
C2 O7 MLI sing 260 n n 
C3 O8 MLI doub 261 n n 
C3 O9 MLI sing 262 n n 
#
_atom_sites.entry_id                     6OCJ 
_atom_sites.fract_transf_matrix[1][1]    0.010497 
_atom_sites.fract_transf_matrix[1][2]    0.006061 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012121 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 M5A A 1 601 1 M5A sup . 
C 3 MLI A 1 602 1 MLI MLI . 
D 4 SIN A 1 603 1 SIN SIN . 
E 5 ACT A 1 604 1 ACT ACT . 
F 6 HOH A 1 701 61 HOH HOH . 
F 6 HOH A 2 702 46 HOH HOH . 
F 6 HOH A 3 703 28 HOH HOH . 
F 6 HOH A 4 704 2 HOH HOH . 
F 6 HOH A 5 705 23 HOH HOH . 
F 6 HOH A 6 706 13 HOH HOH . 
F 6 HOH A 7 707 21 HOH HOH . 
F 6 HOH A 8 708 71 HOH HOH . 
F 6 HOH A 9 709 34 HOH HOH . 
F 6 HOH A 10 710 63 HOH HOH . 
F 6 HOH A 11 711 7 HOH HOH . 
F 6 HOH A 12 712 69 HOH HOH . 
F 6 HOH A 13 713 32 HOH HOH . 
F 6 HOH A 14 714 42 HOH HOH . 
F 6 HOH A 15 715 29 HOH HOH . 
F 6 HOH A 16 716 59 HOH HOH . 
F 6 HOH A 17 717 16 HOH HOH . 
F 6 HOH A 18 718 68 HOH HOH . 
F 6 HOH A 19 719 47 HOH HOH . 
F 6 HOH A 20 720 33 HOH HOH . 
F 6 HOH A 21 721 64 HOH HOH . 
F 6 HOH A 22 722 43 HOH HOH . 
F 6 HOH A 23 723 11 HOH HOH . 
F 6 HOH A 24 724 50 HOH HOH . 
F 6 HOH A 25 725 62 HOH HOH . 
F 6 HOH A 26 726 65 HOH HOH . 
F 6 HOH A 27 727 24 HOH HOH . 
F 6 HOH A 28 728 36 HOH HOH . 
F 6 HOH A 29 729 66 HOH HOH . 
F 6 HOH A 30 730 58 HOH HOH . 
F 6 HOH A 31 731 12 HOH HOH . 
F 6 HOH A 32 732 27 HOH HOH . 
F 6 HOH A 33 733 4 HOH HOH . 
F 6 HOH A 34 734 30 HOH HOH . 
F 6 HOH A 35 735 67 HOH HOH . 
F 6 HOH A 36 736 22 HOH HOH . 
F 6 HOH A 37 737 8 HOH HOH . 
F 6 HOH A 38 738 18 HOH HOH . 
F 6 HOH A 39 739 57 HOH HOH . 
F 6 HOH A 40 740 44 HOH HOH . 
F 6 HOH A 41 741 70 HOH HOH . 
F 6 HOH A 42 742 25 HOH HOH . 
F 6 HOH A 43 743 39 HOH HOH . 
F 6 HOH A 44 744 48 HOH HOH . 
F 6 HOH A 45 745 52 HOH HOH . 
F 6 HOH A 46 746 35 HOH HOH . 
F 6 HOH A 47 747 51 HOH HOH . 
F 6 HOH A 48 748 38 HOH HOH . 
F 6 HOH A 49 749 49 HOH HOH . 
F 6 HOH A 50 750 56 HOH HOH . 
F 6 HOH A 51 751 60 HOH HOH . 
F 6 HOH A 52 752 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . C 3 36.96 -4.479 54.233 1 50.88 ? C1 MLI 602 A 1 
HETATM 2 C C2 MLI . . . C 3 36.552 -3.548 53.095 1 49.44 ? C2 MLI 602 A 1 
HETATM 3 C C3 MLI . . . C 3 35.804 -4.98 55.112 1 56.26 ? C3 MLI 602 A 1 
HETATM 4 O O6 MLI . . . C 3 37.51 -3.242 52.319 1 55.27 ? O6 MLI 602 A 1 
HETATM 5 O O7 MLI . . . C 3 35.344 -3.119 52.963 1 32.28 ? O7 MLI 602 A 1 
HETATM 6 O O8 MLI . . . C 3 34.7 -4.352 55.106 1 46.13 ? O8 MLI 602 A 1 
HETATM 7 O O9 MLI . . . C 3 36.006 -6.019 55.832 1 59.11 ? O9 MLI 602 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#