data_6OCO # _model_server_result.job_id gTYjWOrZ7GzonhWveJrThw _model_server_result.datetime_utc '2024-11-27 04:02:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 6OCO # _exptl.entry_id 6OCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.853 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(1S,4S)-5-(3-chlorophenyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]-2-(pyridin-3-yl)pyrimidine-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OCO _cell.length_a 91.017 _cell.length_b 108.981 _cell.length_c 142.394 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H17 Cl N6' _chem_comp.formula_weight 388.853 _chem_comp.id M5V _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(1S,4S)-5-(3-chlorophenyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]-2-(pyridin-3-yl)pyrimidine-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 M5V doub 218 n y C10 C9 M5V sing 219 n y C11 C12 M5V sing 220 n y C9 C8 M5V doub 221 n y C12 CL1 M5V sing 222 n n C12 C14 M5V doub 223 n y C26 C27 M5V doub 224 n y C26 N25 M5V sing 225 n y C27 C28 M5V sing 226 n y N25 C24 M5V doub 227 n y C28 C23 M5V doub 228 n y C24 C23 M5V sing 229 n y C23 C17 M5V sing 230 n n C8 C14 M5V sing 231 n y C8 N7 M5V sing 232 n n N18 C17 M5V doub 233 n y N18 C19 M5V sing 234 n y C17 N16 M5V sing 235 n y C19 C20 M5V doub 236 n y C6 N7 M5V sing 237 n n C6 C5 M5V sing 238 n n N16 C15 M5V doub 239 n y N7 C3 M5V sing 240 n n C20 C15 M5V sing 241 n y C20 C21 M5V sing 242 n n C15 N1 M5V sing 243 n n C21 N22 M5V trip 244 n n C5 N1 M5V sing 245 n n C5 C4 M5V sing 246 n n C2 N1 M5V sing 247 n n C2 C3 M5V sing 248 n n C3 C4 M5V sing 249 n n C2 H1 M5V sing 250 n n C2 H2 M5V sing 251 n n C3 H3 M5V sing 252 n n C4 H4 M5V sing 253 n n C4 H5 M5V sing 254 n n C5 H6 M5V sing 255 n n C6 H7 M5V sing 256 n n C6 H8 M5V sing 257 n n C11 H9 M5V sing 258 n n C19 H10 M5V sing 259 n n C24 H11 M5V sing 260 n n C27 H12 M5V sing 261 n n C9 H13 M5V sing 262 n n C10 H14 M5V sing 263 n n C14 H15 M5V sing 264 n n C26 H16 M5V sing 265 n n C28 H17 M5V sing 266 n n # _atom_sites.entry_id 6OCO _atom_sites.fract_transf_matrix[1][1] 0.010987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 M5V A 1 1101 1 M5V INX . D 4 HOH A 1 1201 2 HOH HOH . D 4 HOH A 2 1202 10 HOH HOH . D 4 HOH A 3 1203 5 HOH HOH . D 4 HOH A 4 1204 3 HOH HOH . D 4 HOH A 5 1205 13 HOH HOH . D 4 HOH A 6 1206 12 HOH HOH . D 4 HOH A 7 1207 1 HOH HOH . D 4 HOH A 8 1208 6 HOH HOH . D 4 HOH A 9 1209 7 HOH HOH . D 4 HOH A 10 1210 9 HOH HOH . D 4 HOH A 11 1211 14 HOH HOH . E 4 HOH B 1 701 8 HOH HOH . E 4 HOH B 2 702 4 HOH HOH . E 4 HOH B 3 703 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 M5V . . . C 3 41.08 13.078 35.611 1 76.38 ? C2 M5V 1101 A 1 HETATM 2 C C3 M5V . . . C 3 42.098 14.251 35.817 1 79.03 ? C3 M5V 1101 A 1 HETATM 3 C C4 M5V . . . C 3 41.192 15.287 36.576 1 79.55 ? C4 M5V 1101 A 1 HETATM 4 C C5 M5V . . . C 3 39.999 15.191 35.561 1 78.37 ? C5 M5V 1101 A 1 HETATM 5 C C6 M5V . . . C 3 40.781 15.42 34.221 1 80.34 ? C6 M5V 1101 A 1 HETATM 6 C C8 M5V . . . C 3 42.959 14.533 33.467 1 87.55 ? C8 M5V 1101 A 1 HETATM 7 C C11 M5V . . . C 3 44.506 13.698 31.286 1 91.49 ? C11 M5V 1101 A 1 HETATM 8 C C12 M5V . . . C 3 44.356 12.874 32.391 1 90.89 ? C12 M5V 1101 A 1 HETATM 9 C C15 M5V . . . C 3 38.678 13.2 34.94 1 72.94 ? C15 M5V 1101 A 1 HETATM 10 C C17 M5V . . . C 3 36.695 13.668 33.754 1 63.73 ? C17 M5V 1101 A 1 HETATM 11 C C19 M5V . . . C 3 37.34 11.452 33.89 1 73.09 ? C19 M5V 1101 A 1 HETATM 12 C C21 M5V . . . C 3 39.33 10.743 35.057 1 77 ? C21 M5V 1101 A 1 HETATM 13 N N22 M5V . . . C 3 40.045 9.926 35.398 1 80.55 ? N22 M5V 1101 A 1 HETATM 14 C C23 M5V . . . C 3 35.722 14.684 33.277 1 57.42 ? C23 M5V 1101 A 1 HETATM 15 C C24 M5V . . . C 3 36.086 16.034 33.136 1 54.89 ? C24 M5V 1101 A 1 HETATM 16 C C27 M5V . . . C 3 33.52 15.279 32.513 1 54.66 ? C27 M5V 1101 A 1 HETATM 17 N N1 M5V . . . C 3 39.74 13.715 35.694 1 75.63 ? N1 M5V 1101 A 1 HETATM 18 N N7 M5V . . . C 3 42.174 15.016 34.534 1 81.23 ? N7 M5V 1101 A 1 HETATM 19 C C9 M5V . . . C 3 43.127 15.36 32.349 1 90.63 ? C9 M5V 1101 A 1 HETATM 20 C C10 M5V . . . C 3 43.89 14.94 31.269 1 91.22 ? C10 M5V 1101 A 1 HETATM 21 CL CL1 M5V . . . C 3 45.118 11.321 32.436 1 94.88 ? CL1 M5V 1101 A 1 HETATM 22 C C14 M5V . . . C 3 43.598 13.281 33.475 1 89.72 ? C14 M5V 1101 A 1 HETATM 23 N N16 M5V . . . C 3 37.753 14.053 34.472 1 69.09 ? N16 M5V 1101 A 1 HETATM 24 N N18 M5V . . . C 3 36.492 12.38 33.469 1 67.08 ? N18 M5V 1101 A 1 HETATM 25 C C20 M5V . . . C 3 38.471 11.812 34.648 1 73.05 ? C20 M5V 1101 A 1 HETATM 26 N N25 M5V . . . C 3 35.207 16.928 32.707 1 53.72 ? N25 M5V 1101 A 1 HETATM 27 C C26 M5V . . . C 3 33.962 16.589 32.404 1 53.86 ? C26 M5V 1101 A 1 HETATM 28 C C28 M5V . . . C 3 34.401 14.305 32.955 1 56.3 ? C28 M5V 1101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #