data_6OCU # _model_server_result.job_id R2PU9BkzrSiAtrx91-eVFA _model_server_result.datetime_utc '2024-11-27 19:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ocu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 6OCU # _exptl.entry_id 6OCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.432 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{(3R)-3-methyl-4-[(1R,2R)-2-methylcyclopropane-1-carbonyl]piperazin-1-yl}-3-(1-methyl-1H-pyrazol-4-yl)pyrazine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OCU _cell.length_a 90.998 _cell.length_b 109.407 _cell.length_c 142.592 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N7 O' _chem_comp.formula_weight 365.432 _chem_comp.id M5D _chem_comp.mon_nstd_flag . _chem_comp.name 5-{(3R)-3-methyl-4-[(1R,2R)-2-methylcyclopropane-1-carbonyl]piperazin-1-yl}-3-(1-methyl-1H-pyrazol-4-yl)pyrazine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N24 C23 M5D trip 216 n n C18 C16 M5D sing 217 n n C18 C19 M5D sing 218 n n C21 C19 M5D sing 219 n n C23 C2 M5D sing 220 n n C16 C19 M5D sing 221 n n C16 C14 M5D sing 222 n n C30 N28 M5D sing 223 n n N28 N27 M5D sing 224 n y N28 C29 M5D sing 225 n y C2 N3 M5D doub 226 n y C2 C1 M5D sing 227 n y N27 C26 M5D doub 228 n y C29 C25 M5D doub 229 n y C26 C25 M5D sing 230 n y C25 C1 M5D sing 231 n n N3 C4 M5D sing 232 n y C1 N6 M5D doub 233 n y C14 O15 M5D doub 234 n n C14 N11 M5D sing 235 n n C4 C5 M5D doub 236 n y N6 C5 M5D sing 237 n y C5 N7 M5D sing 238 n n C9 N11 M5D sing 239 n n C9 C22 M5D sing 240 n n C9 C8 M5D sing 241 n n N11 C12 M5D sing 242 n n N7 C8 M5D sing 243 n n N7 C13 M5D sing 244 n n C13 C12 M5D sing 245 n n C4 H1 M5D sing 246 n n C8 H2 M5D sing 247 n n C8 H3 M5D sing 248 n n C12 H4 M5D sing 249 n n C12 H5 M5D sing 250 n n C16 H6 M5D sing 251 n n C18 H7 M5D sing 252 n n C18 H8 M5D sing 253 n n C19 H9 M5D sing 254 n n C21 H10 M5D sing 255 n n C21 H11 M5D sing 256 n n C21 H12 M5D sing 257 n n C30 H13 M5D sing 258 n n C30 H14 M5D sing 259 n n C30 H15 M5D sing 260 n n C9 H16 M5D sing 261 n n C13 H17 M5D sing 262 n n C13 H18 M5D sing 263 n n C22 H19 M5D sing 264 n n C22 H20 M5D sing 265 n n C22 H21 M5D sing 266 n n C26 H22 M5D sing 267 n n C29 H23 M5D sing 268 n n # _atom_sites.entry_id 6OCU _atom_sites.fract_transf_matrix[1][1] 0.010989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id M5D _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id M5D _pdbx_nonpoly_scheme.auth_mon_id INX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 M5D . . . C 3 36.205 14.221 33.567 1 73.32 ? C1 M5D 1101 A 1 HETATM 2 C C2 M5D . . . C 3 35.886 12.909 33.123 1 83.2 ? C2 M5D 1101 A 1 HETATM 3 C C4 M5D . . . C 3 37.861 12.125 34.041 1 74.31 ? C4 M5D 1101 A 1 HETATM 4 C C5 M5D . . . C 3 38.209 13.418 34.498 1 88.62 ? C5 M5D 1101 A 1 HETATM 5 C C8 M5D . . . C 3 39.904 15.081 35.385 1 86.83 ? C8 M5D 1101 A 1 HETATM 6 C C12 M5D . . . C 3 41.708 13.118 35.942 1 88.51 ? C12 M5D 1101 A 1 HETATM 7 C C16 M5D . . . C 3 43.326 14.412 32.646 1 89.57 ? C16 M5D 1101 A 1 HETATM 8 C C18 M5D . . . C 3 44.622 14.103 31.891 1 84.7 ? C18 M5D 1101 A 1 HETATM 9 C C19 M5D . . . C 3 44.535 15.343 32.788 1 84.25 ? C19 M5D 1101 A 1 HETATM 10 C C21 M5D . . . C 3 44.521 16.707 32.097 1 79.62 ? C21 M5D 1101 A 1 HETATM 11 C C23 M5D . . . C 3 34.692 12.583 32.408 1 84.14 ? C23 M5D 1101 A 1 HETATM 12 C C30 M5D . . . C 3 32.291 17.27 32.864 1 67.67 ? C30 M5D 1101 A 1 HETATM 13 N N3 M5D . . . C 3 36.736 11.917 33.386 1 77.52 ? N3 M5D 1101 A 1 HETATM 14 N N6 M5D . . . C 3 37.346 14.408 34.239 1 74.05 ? N6 M5D 1101 A 1 HETATM 15 N N7 M5D . . . C 3 39.407 13.69 35.192 1 99.05 ? N7 M5D 1101 A 1 HETATM 16 C C9 M5D . . . C 3 41.261 15.224 34.655 1 76.09 ? C9 M5D 1101 A 1 HETATM 17 N N11 M5D . . . C 3 42.035 13.963 34.771 1 78.77 ? N11 M5D 1101 A 1 HETATM 18 C C13 M5D . . . C 3 40.267 12.613 35.753 1 91.63 ? C13 M5D 1101 A 1 HETATM 19 C C14 M5D . . . C 3 42.972 13.571 33.855 1 94.16 ? C14 M5D 1101 A 1 HETATM 20 O O15 M5D . . . C 3 43.566 12.515 33.998 1 88.41 ? O15 M5D 1101 A 1 HETATM 21 C C22 M5D . . . C 3 42.064 16.406 35.207 1 77.1 ? C22 M5D 1101 A 1 HETATM 22 N N24 M5D . . . C 3 33.795 12.185 31.833 1 101.67 ? N24 M5D 1101 A 1 HETATM 23 C C25 M5D . . . C 3 35.346 15.415 33.357 1 69.93 ? C25 M5D 1101 A 1 HETATM 24 C C26 M5D . . . C 3 35.822 16.741 33.332 1 78.58 ? C26 M5D 1101 A 1 HETATM 25 N N27 M5D . . . C 3 34.811 17.546 33.153 1 81.63 ? N27 M5D 1101 A 1 HETATM 26 N N28 M5D . . . C 3 33.653 16.773 33.058 1 83.37 ? N28 M5D 1101 A 1 HETATM 27 C C29 M5D . . . C 3 33.988 15.481 33.191 1 77.38 ? C29 M5D 1101 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #