data_6OD0 # _model_server_result.job_id yITbfCCk_lnsE3YF19a4Og _model_server_result.datetime_utc '2024-11-22 16:47:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6od0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":203}' # _entry.id 6OD0 # _exptl.entry_id 6OD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.91 _cell.angle_gamma 90 _cell.entry_id 6OD0 _cell.length_a 34.858 _cell.length_b 85.966 _cell.length_c 67.287 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K,M 1 1 B,D,H,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 116 A ASP 116 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 A OD1 ASP 118 A ASP 118 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 G CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc4 A OD1 ASP 120 A ASP 120 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 A O THR 122 A THR 122 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 A OD2 ASP 127 A ASP 127 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A OD1 ASP 161 A ASP 161 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 A OD1 ASP 163 A ASP 163 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A OD1 ASP 165 A ASP 165 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc10 A O THR 167 A THR 167 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 A OE1 GLU 172 A GLU 172 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc12 A OE2 GLU 172 A GLU 172 1_555 F CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc13 E CA CA . A CA 201 1_555 K O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc14 G CA CA . A CA 203 1_555 K O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc15 G CA CA . A CA 203 1_555 L O HOH . B HOH 317 2_647 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc16 G CA CA . A CA 203 1_555 L O HOH . B HOH 346 2_647 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc17 B OD1 ASP 116 B ASP 116 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc18 B OD1 ASP 118 B ASP 118 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc19 B OD1 ASP 120 B ASP 120 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc20 B O THR 122 B THR 122 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc21 B OD2 ASP 127 B ASP 127 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc22 B OD1 ASP 161 B ASP 161 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc23 B OD1 ASP 163 B ASP 163 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc24 B OD1 ASP 165 B ASP 165 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc25 B O THR 167 B THR 167 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc26 B OE1 GLU 172 B GLU 172 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc27 B OE2 GLU 172 B GLU 172 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc28 I CA CA . B CA 202 1_555 L O HOH . B HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc29 J CA CA . B CA 203 1_555 L O HOH . B HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc30 J CA CA . B CA 203 1_555 N O HOH . E HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OD0 _atom_sites.fract_transf_matrix[1][1] 0.028688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000957 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 201 1 CA CA . F 3 CA A 1 202 4 CA CA . G 3 CA A 1 203 5 CA CA . H 3 CA B 1 201 2 CA CA . I 3 CA B 1 202 3 CA CA . J 3 CA B 1 203 6 CA CA . K 4 HOH A 1 301 40 HOH HOH . K 4 HOH A 2 302 4 HOH HOH . K 4 HOH A 3 303 2 HOH HOH . K 4 HOH A 4 304 101 HOH HOH . K 4 HOH A 5 305 72 HOH HOH . K 4 HOH A 6 306 20 HOH HOH . K 4 HOH A 7 307 76 HOH HOH . K 4 HOH A 8 308 92 HOH HOH . K 4 HOH A 9 309 24 HOH HOH . K 4 HOH A 10 310 61 HOH HOH . K 4 HOH A 11 311 9 HOH HOH . K 4 HOH A 12 312 27 HOH HOH . K 4 HOH A 13 313 77 HOH HOH . K 4 HOH A 14 314 55 HOH HOH . K 4 HOH A 15 315 80 HOH HOH . K 4 HOH A 16 316 100 HOH HOH . K 4 HOH A 17 317 10 HOH HOH . K 4 HOH A 18 318 5 HOH HOH . K 4 HOH A 19 319 14 HOH HOH . K 4 HOH A 20 320 77 HOH HOH . K 4 HOH A 21 321 97 HOH HOH . K 4 HOH A 22 322 56 HOH HOH . K 4 HOH A 23 323 70 HOH HOH . K 4 HOH A 24 324 96 HOH HOH . K 4 HOH A 25 325 100 HOH HOH . K 4 HOH A 26 326 58 HOH HOH . K 4 HOH A 27 327 92 HOH HOH . K 4 HOH A 28 328 6 HOH HOH . K 4 HOH A 29 329 23 HOH HOH . K 4 HOH A 30 330 13 HOH HOH . K 4 HOH A 31 331 89 HOH HOH . K 4 HOH A 32 332 15 HOH HOH . K 4 HOH A 33 333 97 HOH HOH . K 4 HOH A 34 334 83 HOH HOH . K 4 HOH A 35 335 82 HOH HOH . K 4 HOH A 36 336 86 HOH HOH . K 4 HOH A 37 337 4 HOH HOH . K 4 HOH A 38 338 18 HOH HOH . K 4 HOH A 39 339 36 HOH HOH . K 4 HOH A 40 340 73 HOH HOH . K 4 HOH A 41 341 87 HOH HOH . K 4 HOH A 42 342 12 HOH HOH . K 4 HOH A 43 343 29 HOH HOH . K 4 HOH A 44 344 51 HOH HOH . K 4 HOH A 45 345 80 HOH HOH . K 4 HOH A 46 346 85 HOH HOH . K 4 HOH A 47 347 66 HOH HOH . K 4 HOH A 48 348 19 HOH HOH . K 4 HOH A 49 349 9 HOH HOH . K 4 HOH A 50 350 2 HOH HOH . K 4 HOH A 51 351 91 HOH HOH . K 4 HOH A 52 352 59 HOH HOH . K 4 HOH A 53 353 57 HOH HOH . K 4 HOH A 54 354 24 HOH HOH . K 4 HOH A 55 355 69 HOH HOH . K 4 HOH A 56 356 50 HOH HOH . K 4 HOH A 57 357 75 HOH HOH . K 4 HOH A 58 358 85 HOH HOH . K 4 HOH A 59 359 98 HOH HOH . K 4 HOH A 60 360 3 HOH HOH . K 4 HOH A 61 361 78 HOH HOH . K 4 HOH A 62 362 33 HOH HOH . K 4 HOH A 63 363 7 HOH HOH . K 4 HOH A 64 364 49 HOH HOH . K 4 HOH A 65 365 84 HOH HOH . K 4 HOH A 66 366 47 HOH HOH . K 4 HOH A 67 367 21 HOH HOH . K 4 HOH A 68 368 15 HOH HOH . K 4 HOH A 69 369 41 HOH HOH . K 4 HOH A 70 370 53 HOH HOH . K 4 HOH A 71 371 48 HOH HOH . K 4 HOH A 72 372 59 HOH HOH . K 4 HOH A 73 373 43 HOH HOH . K 4 HOH A 74 374 39 HOH HOH . K 4 HOH A 75 375 102 HOH HOH . K 4 HOH A 76 376 14 HOH HOH . K 4 HOH A 77 377 63 HOH HOH . K 4 HOH A 78 378 81 HOH HOH . K 4 HOH A 79 379 96 HOH HOH . K 4 HOH A 80 380 71 HOH HOH . K 4 HOH A 81 381 23 HOH HOH . K 4 HOH A 82 382 66 HOH HOH . K 4 HOH A 83 383 99 HOH HOH . L 4 HOH B 1 301 56 HOH HOH . L 4 HOH B 2 302 26 HOH HOH . L 4 HOH B 3 303 29 HOH HOH . L 4 HOH B 4 304 34 HOH HOH . L 4 HOH B 5 305 32 HOH HOH . L 4 HOH B 6 306 93 HOH HOH . L 4 HOH B 7 307 54 HOH HOH . L 4 HOH B 8 308 81 HOH HOH . L 4 HOH B 9 309 93 HOH HOH . L 4 HOH B 10 310 94 HOH HOH . L 4 HOH B 11 311 53 HOH HOH . L 4 HOH B 12 312 88 HOH HOH . L 4 HOH B 13 313 37 HOH HOH . L 4 HOH B 14 314 3 HOH HOH . L 4 HOH B 15 315 33 HOH HOH . L 4 HOH B 16 316 31 HOH HOH . L 4 HOH B 17 317 27 HOH HOH . L 4 HOH B 18 318 63 HOH HOH . L 4 HOH B 19 319 52 HOH HOH . L 4 HOH B 20 320 75 HOH HOH . L 4 HOH B 21 321 1 HOH HOH . L 4 HOH B 22 322 11 HOH HOH . L 4 HOH B 23 323 8 HOH HOH . L 4 HOH B 24 324 28 HOH HOH . L 4 HOH B 25 325 69 HOH HOH . L 4 HOH B 26 326 16 HOH HOH . L 4 HOH B 27 327 30 HOH HOH . L 4 HOH B 28 328 55 HOH HOH . L 4 HOH B 29 329 30 HOH HOH . L 4 HOH B 30 330 7 HOH HOH . L 4 HOH B 31 331 95 HOH HOH . L 4 HOH B 32 332 104 HOH HOH . L 4 HOH B 33 333 65 HOH HOH . L 4 HOH B 34 334 12 HOH HOH . L 4 HOH B 35 335 17 HOH HOH . L 4 HOH B 36 336 95 HOH HOH . L 4 HOH B 37 337 70 HOH HOH . L 4 HOH B 38 338 34 HOH HOH . L 4 HOH B 39 339 8 HOH HOH . L 4 HOH B 40 340 25 HOH HOH . L 4 HOH B 41 341 54 HOH HOH . L 4 HOH B 42 342 74 HOH HOH . L 4 HOH B 43 343 5 HOH HOH . L 4 HOH B 44 344 67 HOH HOH . L 4 HOH B 45 345 60 HOH HOH . L 4 HOH B 46 346 39 HOH HOH . L 4 HOH B 47 347 61 HOH HOH . L 4 HOH B 48 348 19 HOH HOH . L 4 HOH B 49 349 86 HOH HOH . L 4 HOH B 50 350 38 HOH HOH . L 4 HOH B 51 351 83 HOH HOH . L 4 HOH B 52 352 60 HOH HOH . L 4 HOH B 53 353 43 HOH HOH . L 4 HOH B 54 354 88 HOH HOH . L 4 HOH B 55 355 84 HOH HOH . L 4 HOH B 56 356 58 HOH HOH . L 4 HOH B 57 357 67 HOH HOH . L 4 HOH B 58 358 1 HOH HOH . L 4 HOH B 59 359 94 HOH HOH . L 4 HOH B 60 360 25 HOH HOH . L 4 HOH B 61 361 45 HOH HOH . L 4 HOH B 62 362 11 HOH HOH . L 4 HOH B 63 363 13 HOH HOH . L 4 HOH B 64 364 44 HOH HOH . L 4 HOH B 65 365 20 HOH HOH . L 4 HOH B 66 366 51 HOH HOH . L 4 HOH B 67 367 41 HOH HOH . L 4 HOH B 68 368 90 HOH HOH . L 4 HOH B 69 369 82 HOH HOH . L 4 HOH B 70 370 103 HOH HOH . L 4 HOH B 71 371 52 HOH HOH . L 4 HOH B 72 372 16 HOH HOH . L 4 HOH B 73 373 32 HOH HOH . L 4 HOH B 74 374 73 HOH HOH . L 4 HOH B 75 375 62 HOH HOH . L 4 HOH B 76 376 35 HOH HOH . L 4 HOH B 77 377 37 HOH HOH . L 4 HOH B 78 378 31 HOH HOH . L 4 HOH B 79 379 79 HOH HOH . L 4 HOH B 80 380 35 HOH HOH . L 4 HOH B 81 381 64 HOH HOH . L 4 HOH B 82 382 18 HOH HOH . L 4 HOH B 83 383 91 HOH HOH . L 4 HOH B 84 384 76 HOH HOH . L 4 HOH B 85 385 40 HOH HOH . L 4 HOH B 86 386 45 HOH HOH . L 4 HOH B 87 387 46 HOH HOH . L 4 HOH B 88 388 89 HOH HOH . L 4 HOH B 89 389 42 HOH HOH . L 4 HOH B 90 390 106 HOH HOH . L 4 HOH B 91 391 22 HOH HOH . L 4 HOH B 92 392 42 HOH HOH . L 4 HOH B 93 393 107 HOH HOH . M 4 HOH D 1 101 87 HOH HOH . M 4 HOH D 2 102 64 HOH HOH . M 4 HOH D 3 103 68 HOH HOH . M 4 HOH D 4 104 10 HOH HOH . M 4 HOH D 5 105 22 HOH HOH . M 4 HOH D 6 106 62 HOH HOH . M 4 HOH D 7 107 6 HOH HOH . M 4 HOH D 8 108 65 HOH HOH . M 4 HOH D 9 109 46 HOH HOH . M 4 HOH D 10 110 28 HOH HOH . N 4 HOH E 1 101 50 HOH HOH . N 4 HOH E 2 102 17 HOH HOH . N 4 HOH E 3 103 47 HOH HOH . N 4 HOH E 4 104 57 HOH HOH . N 4 HOH E 5 105 26 HOH HOH . N 4 HOH E 6 106 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.651 _atom_site.Cartn_y 13.553 _atom_site.Cartn_z 46.594 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 91.25 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #