data_6ODA # _model_server_result.job_id '_dEgnIicq0anzQaPL7bXOg' _model_server_result.datetime_utc '2024-11-21 17:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6ODA # _exptl.entry_id 6ODA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.308 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.09 _cell.angle_gamma 90 _cell.entry_id 6ODA _cell.length_a 87.75 _cell.length_b 91.29 _cell.length_c 92.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ODA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,P 1 1 B,H,I,J,K,Q 2 1 C,L,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 200 A ASP 176 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc2 A OD1 ASP 200 A ASP 176 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc3 A OD1 ASP 202 A ASP 178 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A O ASP 202 A ASP 178 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc5 A ND1 HIS 204 A HIS 180 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc6 A O HIS 204 A HIS 180 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc7 A O PHE 213 A PHE 189 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc8 A O THR 216 A THR 192 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc9 A O VAL 219 A VAL 195 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc10 A OG SER 223 A SER 199 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc11 A O LEU 224 A LEU 200 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc12 A O TYR 249 A TYR 225 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc13 A OD2 ASP 291 A ASP 267 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc14 D OAK C7 . A C7 401 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc15 D OAL C7 . A C7 401 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc16 B O ASP 200 B ASP 176 1_555 K K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc17 B OD1 ASP 200 B ASP 176 1_555 K K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc18 B OD1 ASP 202 B ASP 178 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc19 B O ASP 202 B ASP 178 1_555 K K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc20 B ND1 HIS 204 B HIS 180 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc21 B O HIS 204 B HIS 180 1_555 K K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc22 B O PHE 213 B PHE 189 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc23 B O THR 216 B THR 192 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc24 B O VAL 219 B VAL 195 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc25 B OG SER 223 B SER 199 1_555 K K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc26 B O LEU 224 B LEU 200 1_555 K K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc27 B O TYR 249 B TYR 225 1_555 J K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc28 B OD2 ASP 291 B ASP 267 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc29 H OAK C7 . B C7 401 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc30 H OAL C7 . B C7 401 1_555 I ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc31 C O ASP 200 C ASP 176 1_555 O K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc32 C OD1 ASP 200 C ASP 176 1_555 O K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc33 C OD1 ASP 202 C ASP 178 1_555 M ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc34 C O ASP 202 C ASP 178 1_555 O K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc35 C ND1 HIS 204 C HIS 180 1_555 M ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc36 C O HIS 204 C HIS 180 1_555 O K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc37 C O PHE 213 C PHE 189 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc38 C O THR 216 C THR 192 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc39 C O VAL 219 C VAL 195 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc40 C OG SER 223 C SER 199 1_555 O K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc41 C O LEU 224 C LEU 200 1_555 O K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc42 C O TYR 249 C TYR 225 1_555 N K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc43 C OD2 ASP 291 C ASP 267 1_555 M ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc44 L OAK C7 . C C7 401 1_555 M ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc45 L OAL C7 . C C7 401 1_555 M ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C17 H15 F3 N2 O3' _chem_comp.formula_weight 352.308 _chem_comp.id C7 _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[3-(hydroxyamino)-3-oxopropyl]phenyl}-3-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAC C7 doub 70 n y CAB CAA C7 sing 71 n y CAC CAD C7 sing 72 n y CAA CAF C7 doub 73 n y CAD CAE C7 doub 74 n y CAE CAF C7 sing 75 n y CAE CAG C7 sing 76 n n CAF NAM C7 sing 77 n n OAP CAN C7 doub 78 n n NAM CAN C7 sing 79 n n CAG CAH C7 sing 80 n n CAH CAI C7 sing 81 n n CAN CAO C7 sing 82 n n CAI NAJ C7 sing 83 n n CAI OAK C7 doub 84 n n NAJ OAL C7 sing 85 n n CAO CAQ C7 doub 86 n y CAO CAU C7 sing 87 n y CAQ CAR C7 sing 88 n y FAY CAV C7 sing 89 n n CAU CAT C7 doub 90 n y CAR CAV C7 sing 91 n n CAR CAS C7 doub 92 n y CAV FAX C7 sing 93 n n CAV FAW C7 sing 94 n n CAT CAS C7 sing 95 n y NAJ H1 C7 sing 96 n n OAL H2 C7 sing 97 n n CAH H3 C7 sing 98 n n CAH H4 C7 sing 99 n n CAG H5 C7 sing 100 n n CAG H6 C7 sing 101 n n CAD H7 C7 sing 102 n n CAC H8 C7 sing 103 n n CAB H9 C7 sing 104 n n CAA H10 C7 sing 105 n n NAM H11 C7 sing 106 n n CAQ H12 C7 sing 107 n n CAU H13 C7 sing 108 n n CAT H14 C7 sing 109 n n CAS H15 C7 sing 110 n n # _atom_sites.entry_id 6ODA _atom_sites.fract_transf_matrix[1][1] 0.011396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000815 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 C7 A 1 401 2 C7 C7 . E 3 ZN A 1 402 388 ZN ZN . F 4 K A 1 403 1 K K . G 4 K A 1 404 2 K K . H 2 C7 B 1 401 1 C7 C7 . I 3 ZN B 1 402 1388 ZN ZN . J 4 K B 1 403 3 K K . K 4 K B 1 404 4 K K . L 2 C7 C 1 401 3 C7 C7 . M 3 ZN C 1 402 2388 ZN ZN . N 4 K C 1 403 5 K K . O 4 K C 1 404 6 K K . P 5 HOH A 1 501 2 HOH HOH . Q 5 HOH B 1 501 1 HOH HOH . R 5 HOH C 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAK C7 . . . D 2 94.055 16.873 -58.156 1 55.55 ? OAK C7 401 A 1 HETATM 2 C CAI C7 . . . D 2 95.242 16.771 -58.429 1 65.49 ? CAI C7 401 A 1 HETATM 3 N NAJ C7 . . . D 2 95.829 15.587 -58.369 1 60.26 ? NAJ C7 401 A 1 HETATM 4 O OAL C7 . . . D 2 95.08 14.479 -58.001 1 53.74 ? OAL C7 401 A 1 HETATM 5 C CAH C7 . . . D 2 96.186 17.898 -58.835 1 75.76 ? CAH C7 401 A 1 HETATM 6 C CAG C7 . . . D 2 95.641 19.324 -58.942 1 83.7 ? CAG C7 401 A 1 HETATM 7 C CAE C7 . . . D 2 95.5 20.105 -60.216 1 90.89 ? CAE C7 401 A 1 HETATM 8 C CAD C7 . . . D 2 95.841 19.513 -61.446 1 94.27 ? CAD C7 401 A 1 HETATM 9 C CAC C7 . . . D 2 95.706 20.201 -62.645 1 95.85 ? CAC C7 401 A 1 HETATM 10 C CAB C7 . . . D 2 95.225 21.496 -62.65 1 95.89 ? CAB C7 401 A 1 HETATM 11 C CAA C7 . . . D 2 94.881 22.099 -61.451 1 94.99 ? CAA C7 401 A 1 HETATM 12 C CAF C7 . . . D 2 95.007 21.432 -60.21 1 93.89 ? CAF C7 401 A 1 HETATM 13 N NAM C7 . . . D 2 94.662 22.037 -59.014 1 96.77 ? NAM C7 401 A 1 HETATM 14 C CAN C7 . . . D 2 94.177 23.281 -58.796 1 101.93 ? CAN C7 401 A 1 HETATM 15 O OAP C7 . . . D 2 93.971 24.074 -59.7 1 105.66 ? OAP C7 401 A 1 HETATM 16 C CAO C7 . . . D 2 93.851 23.79 -57.407 1 103.38 ? CAO C7 401 A 1 HETATM 17 C CAQ C7 . . . D 2 93.352 25.098 -57.257 1 108.69 ? CAQ C7 401 A 1 HETATM 18 C CAU C7 . . . D 2 94.031 23.009 -56.262 1 100.66 ? CAU C7 401 A 1 HETATM 19 C CAT C7 . . . D 2 93.711 23.544 -55.012 1 101.18 ? CAT C7 401 A 1 HETATM 20 C CAS C7 . . . D 2 93.215 24.829 -54.87 1 104.78 ? CAS C7 401 A 1 HETATM 21 C CAR C7 . . . D 2 93.036 25.622 -55.996 1 114.58 ? CAR C7 401 A 1 HETATM 22 C CAV C7 . . . D 2 92.495 27.019 -55.814 1 123.91 ? CAV C7 401 A 1 HETATM 23 F FAW C7 . . . D 2 93.18 27.633 -54.861 1 131.42 ? FAW C7 401 A 1 HETATM 24 F FAX C7 . . . D 2 91.226 26.919 -55.453 1 131.5 ? FAX C7 401 A 1 HETATM 25 F FAY C7 . . . D 2 92.577 27.738 -56.924 1 128.18 ? FAY C7 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #