data_6ODB # _model_server_result.job_id 1qPtWv3gHM3SnjeCCyINcw _model_server_result.datetime_utc '2024-10-19 14:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6odb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 6ODB # _exptl.entry_id 6ODB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.1 _cell.angle_gamma 90 _cell.entry_id 6ODB _cell.length_a 87.915 _cell.length_b 90.95 _cell.length_c 93.067 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ODB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,T 1 1 B,K,L,M,N,O,U 2 1 C,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 200 A ASP 176 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc2 A OD1 ASP 200 A ASP 176 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc3 A OD1 ASP 202 A ASP 178 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 A O ASP 202 A ASP 178 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc5 A ND1 HIS 204 A HIS 180 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 A O HIS 204 A HIS 180 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc7 A O PHE 213 A PHE 189 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc8 A O THR 216 A THR 192 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc9 A O VAL 219 A VAL 195 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc10 A OG SER 223 A SER 199 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc11 A O LEU 224 A LEU 200 1_555 G K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc12 A O TYR 249 A TYR 225 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc13 A OD2 ASP 291 A ASP 267 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc14 D O42 M8G . A M8G 401 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc15 D N43 M8G . A M8G 401 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc16 D O45 M8G . A M8G 401 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc17 F K K . A K 403 1_555 T O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc18 F K K . A K 403 1_555 T O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc19 B O ASP 200 B ASP 176 1_555 N K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc20 B OD1 ASP 200 B ASP 176 1_555 N K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc21 B OD1 ASP 202 B ASP 178 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc22 B O ASP 202 B ASP 178 1_555 N K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc23 B ND1 HIS 204 B HIS 180 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc24 B O HIS 204 B HIS 180 1_555 N K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc25 B O PHE 213 B PHE 189 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc26 B O THR 216 B THR 192 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc27 B O VAL 219 B VAL 195 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc28 B OG SER 223 B SER 199 1_555 N K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc29 B O LEU 224 B LEU 200 1_555 N K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc30 B O TYR 249 B TYR 225 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc31 B OD2 ASP 291 B ASP 267 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc32 K O42 M8G . B M8G 401 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc33 K N43 M8G . B M8G 401 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc34 K O45 M8G . B M8G 401 1_555 L ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc35 M K K . B K 403 1_555 U O HOH . B HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc36 C O ASP 200 C ASP 176 1_555 S K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc37 C OD1 ASP 200 C ASP 176 1_555 S K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc38 C OD1 ASP 202 C ASP 178 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc39 C O ASP 202 C ASP 178 1_555 S K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc40 C ND1 HIS 204 C HIS 180 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc41 C O HIS 204 C HIS 180 1_555 S K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc42 C O PHE 213 C PHE 189 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc43 C O THR 216 C THR 192 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc44 C O VAL 219 C VAL 195 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc45 C OG SER 223 C SER 199 1_555 S K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc46 C O LEU 224 C LEU 200 1_555 S K K . C K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc47 C O TYR 249 C TYR 225 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc48 C OD2 ASP 291 C ASP 267 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc49 P O42 M8G . C M8G 401 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc50 P O45 M8G . C M8G 401 1_555 Q ZN ZN . C ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc51 R K K . C K 403 1_555 V O HOH . C HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ODB _atom_sites.fract_transf_matrix[1][1] 0.011375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000815 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 M8G A 1 401 1 M8G C08 . E 3 ZN A 1 402 1 ZN ZN . F 4 K A 1 403 1 K K . G 4 K A 1 404 2 K K . H 5 GOL A 1 405 2 GOL GOL . I 5 GOL A 1 406 3 GOL GOL . J 5 GOL A 1 407 4 GOL GOL . K 2 M8G B 1 401 3 M8G C08 . L 3 ZN B 1 402 2 ZN ZN . M 4 K B 1 403 3 K K . N 4 K B 1 404 4 K K . O 5 GOL B 1 405 1 GOL GOL . P 2 M8G C 1 401 2 M8G C08 . Q 3 ZN C 1 402 3 ZN ZN . R 4 K C 1 403 5 K K . S 4 K C 1 404 6 K K . T 6 HOH A 1 501 69 HOH HOH . T 6 HOH A 2 502 73 HOH HOH . T 6 HOH A 3 503 19 HOH HOH . T 6 HOH A 4 504 8 HOH HOH . T 6 HOH A 5 505 78 HOH HOH . T 6 HOH A 6 506 43 HOH HOH . T 6 HOH A 7 507 55 HOH HOH . T 6 HOH A 8 508 71 HOH HOH . T 6 HOH A 9 509 67 HOH HOH . T 6 HOH A 10 510 51 HOH HOH . T 6 HOH A 11 511 58 HOH HOH . T 6 HOH A 12 512 26 HOH HOH . T 6 HOH A 13 513 33 HOH HOH . T 6 HOH A 14 514 10 HOH HOH . T 6 HOH A 15 515 9 HOH HOH . T 6 HOH A 16 516 16 HOH HOH . T 6 HOH A 17 517 2 HOH HOH . T 6 HOH A 18 518 21 HOH HOH . T 6 HOH A 19 519 91 HOH HOH . T 6 HOH A 20 520 46 HOH HOH . T 6 HOH A 21 521 11 HOH HOH . T 6 HOH A 22 522 87 HOH HOH . T 6 HOH A 23 523 57 HOH HOH . T 6 HOH A 24 524 28 HOH HOH . T 6 HOH A 25 525 79 HOH HOH . T 6 HOH A 26 526 17 HOH HOH . T 6 HOH A 27 527 12 HOH HOH . T 6 HOH A 28 528 86 HOH HOH . T 6 HOH A 29 529 56 HOH HOH . T 6 HOH A 30 530 24 HOH HOH . T 6 HOH A 31 531 22 HOH HOH . T 6 HOH A 32 532 85 HOH HOH . T 6 HOH A 33 533 35 HOH HOH . T 6 HOH A 34 534 25 HOH HOH . T 6 HOH A 35 535 7 HOH HOH . T 6 HOH A 36 536 80 HOH HOH . T 6 HOH A 37 537 77 HOH HOH . T 6 HOH A 38 538 1 HOH HOH . T 6 HOH A 39 539 13 HOH HOH . T 6 HOH A 40 540 20 HOH HOH . T 6 HOH A 41 541 15 HOH HOH . T 6 HOH A 42 542 14 HOH HOH . T 6 HOH A 43 543 34 HOH HOH . T 6 HOH A 44 544 49 HOH HOH . T 6 HOH A 45 545 27 HOH HOH . T 6 HOH A 46 546 53 HOH HOH . T 6 HOH A 47 547 23 HOH HOH . T 6 HOH A 48 548 84 HOH HOH . T 6 HOH A 49 549 89 HOH HOH . T 6 HOH A 50 550 88 HOH HOH . T 6 HOH A 51 551 48 HOH HOH . U 6 HOH B 1 501 62 HOH HOH . U 6 HOH B 2 502 52 HOH HOH . U 6 HOH B 3 503 4 HOH HOH . U 6 HOH B 4 504 36 HOH HOH . U 6 HOH B 5 505 65 HOH HOH . U 6 HOH B 6 506 82 HOH HOH . U 6 HOH B 7 507 39 HOH HOH . U 6 HOH B 8 508 72 HOH HOH . U 6 HOH B 9 509 37 HOH HOH . U 6 HOH B 10 510 60 HOH HOH . U 6 HOH B 11 511 74 HOH HOH . U 6 HOH B 12 512 50 HOH HOH . U 6 HOH B 13 513 44 HOH HOH . U 6 HOH B 14 514 45 HOH HOH . U 6 HOH B 15 515 54 HOH HOH . U 6 HOH B 16 516 83 HOH HOH . U 6 HOH B 17 517 61 HOH HOH . U 6 HOH B 18 518 3 HOH HOH . U 6 HOH B 19 519 42 HOH HOH . U 6 HOH B 20 520 38 HOH HOH . U 6 HOH B 21 521 6 HOH HOH . U 6 HOH B 22 522 75 HOH HOH . U 6 HOH B 23 523 40 HOH HOH . U 6 HOH B 24 524 59 HOH HOH . U 6 HOH B 25 525 41 HOH HOH . V 6 HOH C 1 501 66 HOH HOH . V 6 HOH C 2 502 18 HOH HOH . V 6 HOH C 3 503 64 HOH HOH . V 6 HOH C 4 504 70 HOH HOH . V 6 HOH C 5 505 68 HOH HOH . V 6 HOH C 6 506 5 HOH HOH . V 6 HOH C 7 507 29 HOH HOH . V 6 HOH C 8 508 31 HOH HOH . V 6 HOH C 9 509 63 HOH HOH . V 6 HOH C 10 510 76 HOH HOH . V 6 HOH C 11 511 90 HOH HOH . V 6 HOH C 12 512 47 HOH HOH . V 6 HOH C 13 513 81 HOH HOH . V 6 HOH C 14 514 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 125.453 _atom_site.Cartn_y -12.423 _atom_site.Cartn_z -51.036 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #