data_6ODC # _model_server_result.job_id 8NNMHq7in5TQJ5goFZO9dg _model_server_result.datetime_utc '2024-10-19 15:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6odc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":407}' # _entry.id 6ODC # _exptl.entry_id 6ODC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.07 _cell.angle_gamma 90 _cell.entry_id 6ODC _cell.length_a 87.54 _cell.length_b 91.161 _cell.length_c 92.574 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ODC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,T 1 1 B,K,L,M,N,O,U 2 1 C,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 200 A ASP 176 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc2 A OD1 ASP 200 A ASP 176 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc3 A OD2 ASP 202 A ASP 178 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 A O ASP 202 A ASP 178 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc5 A ND1 HIS 204 A HIS 180 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 A O HIS 204 A HIS 180 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc7 A O PHE 213 A PHE 189 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc8 A O THR 216 A THR 192 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc9 A O VAL 219 A VAL 195 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc10 A OG SER 223 A SER 199 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 A O LEU 224 A LEU 200 1_555 F K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc12 A O TYR 249 A TYR 225 1_555 E K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc13 A OD2 ASP 291 A ASP 267 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc14 D ZN ZN . A ZN 401 1_555 G O11 M7Y . A M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc15 D ZN ZN . A ZN 401 1_555 G O12 M7Y . A M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc16 E K K . A K 402 1_555 T O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc17 E K K . A K 402 1_555 T O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc18 B O ASP 200 B ASP 176 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc19 B OD1 ASP 200 B ASP 176 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc20 B OD2 ASP 202 B ASP 178 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc21 B O ASP 202 B ASP 178 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc22 B ND1 HIS 204 B HIS 180 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc23 B O HIS 204 B HIS 180 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc24 B O PHE 213 B PHE 189 1_555 L K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc25 B O THR 216 B THR 192 1_555 L K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc26 B O VAL 219 B VAL 195 1_555 L K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc27 B OG SER 223 B SER 199 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc28 B O LEU 224 B LEU 200 1_555 M K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc29 B O TYR 249 B TYR 225 1_555 L K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc30 B OD2 ASP 291 B ASP 267 1_555 K ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc31 K ZN ZN . B ZN 401 1_555 N N10 M7Y . B M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc32 K ZN ZN . B ZN 401 1_555 N O11 M7Y . B M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc33 K ZN ZN . B ZN 401 1_555 N O12 M7Y . B M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc34 L K K . B K 402 1_555 U O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc35 L K K . B K 402 1_555 U O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc36 C O ASP 200 C ASP 176 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc37 C OD1 ASP 200 C ASP 176 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc38 C OD2 ASP 202 C ASP 178 1_555 P ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc39 C O ASP 202 C ASP 178 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc40 C ND1 HIS 204 C HIS 180 1_555 P ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc41 C O HIS 204 C HIS 180 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc42 C O PHE 213 C PHE 189 1_555 Q K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc43 C O THR 216 C THR 192 1_555 Q K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc44 C O VAL 219 C VAL 195 1_555 Q K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc45 C OG SER 223 C SER 199 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc46 C O LEU 224 C LEU 200 1_555 R K K . C K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc47 C O TYR 249 C TYR 225 1_555 Q K K . C K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc48 C OD2 ASP 291 C ASP 267 1_555 P ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc49 P ZN ZN . C ZN 401 1_555 S N10 M7Y . C M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc50 P ZN ZN . C ZN 401 1_555 S O11 M7Y . C M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc51 P ZN ZN . C ZN 401 1_555 S O12 M7Y . C M7Y 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc52 Q K K . C K 402 1_555 V O HOH . C HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc53 Q K K . C K 402 1_555 V O HOH . C HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6ODC _atom_sites.fract_transf_matrix[1][1] 0.011423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000812 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 401 1 ZN ZN . E 3 K A 1 402 1 K K . F 3 K A 1 403 2 K K . G 4 M7Y A 1 404 1 M7Y LIG . H 5 EDO A 1 405 1 EDO EDO . I 5 EDO A 1 406 3 EDO EDO . J 5 EDO A 1 407 4 EDO EDO . K 2 ZN B 1 401 2 ZN ZN . L 3 K B 1 402 3 K K . M 3 K B 1 403 4 K K . N 4 M7Y B 1 404 2 M7Y LIG . O 5 EDO B 1 405 2 EDO EDO . P 2 ZN C 1 401 3 ZN ZN . Q 3 K C 1 402 5 K K . R 3 K C 1 403 6 K K . S 4 M7Y C 1 404 3 M7Y LIG . T 6 HOH A 1 501 59 HOH HOH . T 6 HOH A 2 502 34 HOH HOH . T 6 HOH A 3 503 31 HOH HOH . T 6 HOH A 4 504 15 HOH HOH . T 6 HOH A 5 505 27 HOH HOH . T 6 HOH A 6 506 30 HOH HOH . T 6 HOH A 7 507 61 HOH HOH . T 6 HOH A 8 508 22 HOH HOH . T 6 HOH A 9 509 50 HOH HOH . T 6 HOH A 10 510 43 HOH HOH . U 6 HOH B 1 501 2 HOH HOH . U 6 HOH B 2 502 19 HOH HOH . U 6 HOH B 3 503 26 HOH HOH . U 6 HOH B 4 504 1 HOH HOH . U 6 HOH B 5 505 16 HOH HOH . U 6 HOH B 6 506 28 HOH HOH . U 6 HOH B 7 507 14 HOH HOH . U 6 HOH B 8 508 8 HOH HOH . U 6 HOH B 9 509 20 HOH HOH . U 6 HOH B 10 510 10 HOH HOH . U 6 HOH B 11 511 18 HOH HOH . U 6 HOH B 12 512 6 HOH HOH . U 6 HOH B 13 513 47 HOH HOH . U 6 HOH B 14 514 33 HOH HOH . U 6 HOH B 15 515 17 HOH HOH . U 6 HOH B 16 516 45 HOH HOH . U 6 HOH B 17 517 7 HOH HOH . U 6 HOH B 18 518 23 HOH HOH . U 6 HOH B 19 519 9 HOH HOH . U 6 HOH B 20 520 29 HOH HOH . U 6 HOH B 21 521 13 HOH HOH . U 6 HOH B 22 522 5 HOH HOH . U 6 HOH B 23 523 54 HOH HOH . U 6 HOH B 24 524 46 HOH HOH . U 6 HOH B 25 525 58 HOH HOH . U 6 HOH B 26 526 38 HOH HOH . U 6 HOH B 27 527 24 HOH HOH . U 6 HOH B 28 528 41 HOH HOH . U 6 HOH B 29 529 40 HOH HOH . U 6 HOH B 30 530 51 HOH HOH . U 6 HOH B 31 531 44 HOH HOH . U 6 HOH B 32 532 52 HOH HOH . U 6 HOH B 33 533 60 HOH HOH . U 6 HOH B 34 534 49 HOH HOH . U 6 HOH B 35 535 37 HOH HOH . U 6 HOH B 36 536 25 HOH HOH . U 6 HOH B 37 537 53 HOH HOH . U 6 HOH B 38 538 36 HOH HOH . U 6 HOH B 39 539 55 HOH HOH . V 6 HOH C 1 501 11 HOH HOH . V 6 HOH C 2 502 3 HOH HOH . V 6 HOH C 3 503 57 HOH HOH . V 6 HOH C 4 504 12 HOH HOH . V 6 HOH C 5 505 42 HOH HOH . V 6 HOH C 6 506 32 HOH HOH . V 6 HOH C 7 507 4 HOH HOH . V 6 HOH C 8 508 56 HOH HOH . V 6 HOH C 9 509 39 HOH HOH . V 6 HOH C 10 510 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 5 135.47 -6.358 -38.108 1 77.65 ? C1 EDO 407 A 1 HETATM 2 O O1 EDO . . . J 5 135.263 -5.518 -36.959 1 72.59 ? O1 EDO 407 A 1 HETATM 3 C C2 EDO . . . J 5 136.956 -6.502 -38.483 1 78.51 ? C2 EDO 407 A 1 HETATM 4 O O2 EDO . . . J 5 137.174 -6.25 -39.888 1 76.7 ? O2 EDO 407 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #