data_6ODD # _model_server_result.job_id MDfd1YOkTt_LxDyg-rzB-g _model_server_result.datetime_utc '2024-11-30 07:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6odd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6ODD # _exptl.entry_id 6ODD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ODD _cell.length_a 123.19 _cell.length_b 123.19 _cell.length_c 123.19 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ODD _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 123.19 61.595 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 41 A SER 45 1_555 C P24 8Q1 . A 8Q1 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? metalc ? metalc1 A O ASP 79 A ASP 83 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 A OD1 ASP 79 A ASP 83 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc3 A OD1 ASP 79 A ASP 83 1_555 D CA CA . A CA 302 16_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A OD2 ASP 79 A ASP 83 1_555 D CA CA . A CA 302 16_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc5 A OD1 ASP 82 A ASP 86 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 D CA CA . A CA 302 1_555 E O HOH . A HOH 417 16_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc7 D CA CA . A CA 302 1_555 E O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ODD _atom_sites.fract_transf_matrix[1][1] 0.008118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8Q1 A 1 301 301 8Q1 8Q1 . D 4 CA A 1 302 1 CA CA . E 5 HOH A 1 401 2 HOH HOH . E 5 HOH A 2 402 6 HOH HOH . E 5 HOH A 3 403 25 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 22 HOH HOH . E 5 HOH A 6 406 16 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 13 HOH HOH . E 5 HOH A 9 409 8 HOH HOH . E 5 HOH A 10 410 9 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 15 HOH HOH . E 5 HOH A 14 414 1 HOH HOH . E 5 HOH A 15 415 26 HOH HOH . E 5 HOH A 16 416 10 HOH HOH . E 5 HOH A 17 417 24 HOH HOH . E 5 HOH A 18 418 5 HOH HOH . E 5 HOH A 19 419 23 HOH HOH . E 5 HOH A 20 420 18 HOH HOH . E 5 HOH A 21 421 29 HOH HOH . E 5 HOH A 22 422 28 HOH HOH . E 5 HOH A 23 423 33 HOH HOH . F 5 HOH B 1 101 30 HOH HOH . F 5 HOH B 2 102 14 HOH HOH . F 5 HOH B 3 103 3 HOH HOH . F 5 HOH B 4 104 21 HOH HOH . F 5 HOH B 5 105 17 HOH HOH . F 5 HOH B 6 106 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 15.368 _atom_site.Cartn_y 63.479 _atom_site.Cartn_z 30.725 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #