data_6ODL
#
_model_server_result.job_id            VjOr2ZzdP-ylDop-Z8wTSg 
_model_server_result.datetime_utc      '2024-11-05 00:38:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6odl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    6ODL 
#
_exptl.entry_id    6ODL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.246 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2R)-2-[(S)-amino(carboxy)methyl]-1-butylcyclopropane-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ODL 
_cell.length_a            52.094 
_cell.length_b            52.094 
_cell.length_c            197.804 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ODL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 32 1_555 A SG CYS 52 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 33 A CYS 39 1_555 A SG CYS 53 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 223 A CYS 229 1_555 A SG CYS 278 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 26 B CYS 32 1_555 B SG CYS 52 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 B SG CYS 33 B CYS 39 1_555 B SG CYS 53 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 B SG CYS 223 B CYS 229 1_555 B SG CYS 278 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C10 H17 N O4' 
_chem_comp.formula_weight    215.246 
_chem_comp.id                M7V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2R)-2-[(S)-amino(carboxy)methyl]-1-butylcyclopropane-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C09 M7V sing 218 n n 
C09 C08 M7V sing 219 n n 
C08 C04 M7V sing 220 n n 
C04 C03 M7V sing 221 n n 
O04 C05 M7V doub 222 n n 
C03 C05 M7V sing 223 n n 
C03 C02 M7V sing 224 n n 
C03 C01 M7V sing 225 n n 
C05 O03 M7V sing 226 n n 
C02 C01 M7V sing 227 n n 
C01 C06 M7V sing 228 n n 
O01 C07 M7V doub 229 n n 
C06 C07 M7V sing 230 n n 
C06 N01 M7V sing 231 n n 
C07 O02 M7V sing 232 n n 
C10 H1 M7V sing 233 n n 
C10 H2 M7V sing 234 n n 
C10 H3 M7V sing 235 n n 
C01 H4 M7V sing 236 n n 
C02 H5 M7V sing 237 n n 
C02 H6 M7V sing 238 n n 
C04 H7 M7V sing 239 n n 
C04 H8 M7V sing 240 n n 
C06 H9 M7V sing 241 n n 
C08 H10 M7V sing 242 n n 
C08 H11 M7V sing 243 n n 
C09 H12 M7V sing 244 n n 
C09 H13 M7V sing 245 n n 
N01 H14 M7V sing 246 n n 
N01 H15 M7V sing 247 n n 
O02 H17 M7V sing 248 n n 
O03 H18 M7V sing 249 n n 
#
_atom_sites.entry_id                     6ODL 
_atom_sites.fract_transf_matrix[1][1]    0.019196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019196 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 M7V A 1 301 286 M7V BCG . 
D 2 M7V B 1 301 286 M7V BCG . 
E 3 HOH A 1 401 359 HOH HOH . 
E 3 HOH A 2 402 354 HOH HOH . 
E 3 HOH A 3 403 362 HOH HOH . 
E 3 HOH A 4 404 344 HOH HOH . 
E 3 HOH A 5 405 313 HOH HOH . 
E 3 HOH A 6 406 337 HOH HOH . 
E 3 HOH A 7 407 348 HOH HOH . 
E 3 HOH A 8 408 324 HOH HOH . 
E 3 HOH A 9 409 312 HOH HOH . 
E 3 HOH A 10 410 347 HOH HOH . 
E 3 HOH A 11 411 336 HOH HOH . 
E 3 HOH A 12 412 307 HOH HOH . 
E 3 HOH A 13 413 350 HOH HOH . 
E 3 HOH A 14 414 353 HOH HOH . 
E 3 HOH A 15 415 290 HOH HOH . 
E 3 HOH A 16 416 352 HOH HOH . 
E 3 HOH A 17 417 332 HOH HOH . 
E 3 HOH A 18 418 288 HOH HOH . 
E 3 HOH A 19 419 298 HOH HOH . 
E 3 HOH A 20 420 361 HOH HOH . 
E 3 HOH A 21 421 333 HOH HOH . 
E 3 HOH A 22 422 325 HOH HOH . 
E 3 HOH A 23 423 355 HOH HOH . 
E 3 HOH A 24 424 338 HOH HOH . 
E 3 HOH A 25 425 365 HOH HOH . 
E 3 HOH A 26 426 303 HOH HOH . 
E 3 HOH A 27 427 339 HOH HOH . 
E 3 HOH A 28 428 343 HOH HOH . 
E 3 HOH A 29 429 342 HOH HOH . 
E 3 HOH A 30 430 340 HOH HOH . 
E 3 HOH A 31 431 351 HOH HOH . 
E 3 HOH A 32 432 363 HOH HOH . 
E 3 HOH A 33 433 300 HOH HOH . 
E 3 HOH A 34 434 358 HOH HOH . 
E 3 HOH A 35 435 293 HOH HOH . 
E 3 HOH A 36 436 349 HOH HOH . 
E 3 HOH A 37 437 311 HOH HOH . 
E 3 HOH A 38 438 372 HOH HOH . 
E 3 HOH A 39 439 305 HOH HOH . 
E 3 HOH A 40 440 368 HOH HOH . 
E 3 HOH A 41 441 335 HOH HOH . 
E 3 HOH A 42 442 294 HOH HOH . 
E 3 HOH A 43 443 299 HOH HOH . 
E 3 HOH A 44 444 292 HOH HOH . 
E 3 HOH A 45 445 316 HOH HOH . 
E 3 HOH A 46 446 367 HOH HOH . 
E 3 HOH A 47 447 302 HOH HOH . 
E 3 HOH A 48 448 327 HOH HOH . 
E 3 HOH A 49 449 346 HOH HOH . 
E 3 HOH A 50 450 318 HOH HOH . 
E 3 HOH A 51 451 345 HOH HOH . 
E 3 HOH A 52 452 287 HOH HOH . 
E 3 HOH A 53 453 364 HOH HOH . 
E 3 HOH A 54 454 328 HOH HOH . 
E 3 HOH A 55 455 304 HOH HOH . 
E 3 HOH A 56 456 357 HOH HOH . 
E 3 HOH A 57 457 329 HOH HOH . 
E 3 HOH A 58 458 366 HOH HOH . 
E 3 HOH A 59 459 356 HOH HOH . 
E 3 HOH A 60 460 291 HOH HOH . 
E 3 HOH A 61 461 323 HOH HOH . 
E 3 HOH A 62 462 315 HOH HOH . 
E 3 HOH A 63 463 334 HOH HOH . 
E 3 HOH A 64 464 289 HOH HOH . 
E 3 HOH A 65 465 301 HOH HOH . 
E 3 HOH A 66 466 297 HOH HOH . 
E 3 HOH A 67 467 296 HOH HOH . 
E 3 HOH A 68 468 306 HOH HOH . 
E 3 HOH A 69 469 326 HOH HOH . 
E 3 HOH A 70 470 320 HOH HOH . 
E 3 HOH A 71 471 322 HOH HOH . 
E 3 HOH A 72 472 309 HOH HOH . 
E 3 HOH A 73 473 330 HOH HOH . 
E 3 HOH A 74 474 321 HOH HOH . 
E 3 HOH A 75 475 295 HOH HOH . 
E 3 HOH A 76 476 317 HOH HOH . 
E 3 HOH A 77 477 360 HOH HOH . 
E 3 HOH A 78 478 331 HOH HOH . 
E 3 HOH A 79 479 371 HOH HOH . 
E 3 HOH A 80 480 310 HOH HOH . 
E 3 HOH A 81 481 308 HOH HOH . 
E 3 HOH A 82 482 370 HOH HOH . 
E 3 HOH A 83 483 341 HOH HOH . 
E 3 HOH A 84 484 314 HOH HOH . 
E 3 HOH A 85 485 367 HOH HOH . 
E 3 HOH A 86 486 338 HOH HOH . 
F 3 HOH B 1 401 364 HOH HOH . 
F 3 HOH B 2 402 366 HOH HOH . 
F 3 HOH B 3 403 302 HOH HOH . 
F 3 HOH B 4 404 331 HOH HOH . 
F 3 HOH B 5 405 347 HOH HOH . 
F 3 HOH B 6 406 323 HOH HOH . 
F 3 HOH B 7 407 304 HOH HOH . 
F 3 HOH B 8 408 321 HOH HOH . 
F 3 HOH B 9 409 354 HOH HOH . 
F 3 HOH B 10 410 345 HOH HOH . 
F 3 HOH B 11 411 320 HOH HOH . 
F 3 HOH B 12 412 353 HOH HOH . 
F 3 HOH B 13 413 358 HOH HOH . 
F 3 HOH B 14 414 306 HOH HOH . 
F 3 HOH B 15 415 351 HOH HOH . 
F 3 HOH B 16 416 314 HOH HOH . 
F 3 HOH B 17 417 315 HOH HOH . 
F 3 HOH B 18 418 326 HOH HOH . 
F 3 HOH B 19 419 343 HOH HOH . 
F 3 HOH B 20 420 356 HOH HOH . 
F 3 HOH B 21 421 297 HOH HOH . 
F 3 HOH B 22 422 362 HOH HOH . 
F 3 HOH B 23 423 324 HOH HOH . 
F 3 HOH B 24 424 342 HOH HOH . 
F 3 HOH B 25 425 344 HOH HOH . 
F 3 HOH B 26 426 311 HOH HOH . 
F 3 HOH B 27 427 335 HOH HOH . 
F 3 HOH B 28 428 341 HOH HOH . 
F 3 HOH B 29 429 313 HOH HOH . 
F 3 HOH B 30 430 300 HOH HOH . 
F 3 HOH B 31 431 294 HOH HOH . 
F 3 HOH B 32 432 296 HOH HOH . 
F 3 HOH B 33 433 369 HOH HOH . 
F 3 HOH B 34 434 363 HOH HOH . 
F 3 HOH B 35 435 327 HOH HOH . 
F 3 HOH B 36 436 322 HOH HOH . 
F 3 HOH B 37 437 308 HOH HOH . 
F 3 HOH B 38 438 330 HOH HOH . 
F 3 HOH B 39 439 352 HOH HOH . 
F 3 HOH B 40 440 316 HOH HOH . 
F 3 HOH B 41 441 290 HOH HOH . 
F 3 HOH B 42 442 359 HOH HOH . 
F 3 HOH B 43 443 288 HOH HOH . 
F 3 HOH B 44 444 340 HOH HOH . 
F 3 HOH B 45 445 299 HOH HOH . 
F 3 HOH B 46 446 348 HOH HOH . 
F 3 HOH B 47 447 295 HOH HOH . 
F 3 HOH B 48 448 319 HOH HOH . 
F 3 HOH B 49 449 318 HOH HOH . 
F 3 HOH B 50 450 365 HOH HOH . 
F 3 HOH B 51 451 298 HOH HOH . 
F 3 HOH B 52 452 293 HOH HOH . 
F 3 HOH B 53 453 292 HOH HOH . 
F 3 HOH B 54 454 301 HOH HOH . 
F 3 HOH B 55 455 310 HOH HOH . 
F 3 HOH B 56 456 329 HOH HOH . 
F 3 HOH B 57 457 355 HOH HOH . 
F 3 HOH B 58 458 303 HOH HOH . 
F 3 HOH B 59 459 309 HOH HOH . 
F 3 HOH B 60 460 317 HOH HOH . 
F 3 HOH B 61 461 346 HOH HOH . 
F 3 HOH B 62 462 332 HOH HOH . 
F 3 HOH B 63 463 361 HOH HOH . 
F 3 HOH B 64 464 291 HOH HOH . 
F 3 HOH B 65 465 339 HOH HOH . 
F 3 HOH B 66 466 357 HOH HOH . 
F 3 HOH B 67 467 336 HOH HOH . 
F 3 HOH B 68 468 305 HOH HOH . 
F 3 HOH B 69 469 287 HOH HOH . 
F 3 HOH B 70 470 350 HOH HOH . 
F 3 HOH B 71 471 337 HOH HOH . 
F 3 HOH B 72 472 328 HOH HOH . 
F 3 HOH B 73 473 325 HOH HOH . 
F 3 HOH B 74 474 333 HOH HOH . 
F 3 HOH B 75 475 289 HOH HOH . 
F 3 HOH B 76 476 312 HOH HOH . 
F 3 HOH B 77 477 334 HOH HOH . 
F 3 HOH B 78 478 349 HOH HOH . 
F 3 HOH B 79 479 307 HOH HOH . 
F 3 HOH B 80 480 360 HOH HOH . 
F 3 HOH B 81 481 369 HOH HOH . 
F 3 HOH B 82 482 368 HOH HOH . 
F 3 HOH B 83 483 319 HOH HOH . 
F 3 HOH B 84 484 370 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 M7V . . . C 2 24.661 11.347 -18.013 1 26.75 ? C10 M7V 301 A 1 
HETATM 2 C C01 M7V . . . C 2 24.39 10.112 -13.407 1 31.17 ? C01 M7V 301 A 1 
HETATM 3 C C02 M7V . . . C 2 23.391 9.289 -13.778 1 28.77 ? C02 M7V 301 A 1 
HETATM 4 C C03 M7V . . . C 2 24.523 9.394 -14.547 1 32.2 ? C03 M7V 301 A 1 
HETATM 5 C C04 M7V . . . C 2 24.683 9.876 -15.666 1 29.02 ? C04 M7V 301 A 1 
HETATM 6 C C05 M7V . . . C 2 25.451 8.161 -14.509 1 30.57 ? C05 M7V 301 A 1 
HETATM 7 C C06 M7V . . . C 2 25.048 10.1 -12.322 1 27.7 ? C06 M7V 301 A 1 
HETATM 8 C C07 M7V . . . C 2 26.093 11.306 -12.322 1 25.71 ? C07 M7V 301 A 1 
HETATM 9 C C08 M7V . . . C 2 23.377 9.76 -16.492 1 28.85 ? C08 M7V 301 A 1 
HETATM 10 C C09 M7V . . . C 2 23.277 10.885 -17.544 1 30.35 ? C09 M7V 301 A 1 
HETATM 11 N N01 M7V . . . C 2 24.087 10.282 -11.175 1 26.16 ? N01 M7V 301 A 1 
HETATM 12 O O01 M7V . . . C 2 27.004 11.351 -13.195 1 29 -1 O01 M7V 301 A 1 
HETATM 13 O O02 M7V . . . C 2 26.008 12.214 -11.447 1 21.14 ? O02 M7V 301 A 1 
HETATM 14 O O03 M7V . . . C 2 25.269 7.253 -13.643 1 28.97 ? O03 M7V 301 A 1 
HETATM 15 O O04 M7V . . . C 2 26.395 8.046 -15.345 1 27.08 -1 O04 M7V 301 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#