data_6OEB
#
_model_server_result.job_id            o6IKcnRz4qQszGfUbIzRBA 
_model_server_result.datetime_utc      '2024-10-19 17:37:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oeb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":101}' 
#
_entry.id    6OEB 
#
_exptl.entry_id    6OEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.77 
_cell.angle_gamma         90 
_cell.entry_id            6OEB 
_cell.length_a            55.728 
_cell.length_b            51.151 
_cell.length_c            149.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 
B,C,S,T,V,W 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_444 -x-1/2,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 -24.25858 -25.5755 -74.51783 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N3 DC 2 B DC 2 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N4 DC 2 B DC 2 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O2 DC 2 B DC 2 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 DA 3 B DA 3 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N6 DA 3 B DA 3 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N1 DG 4 B DG 4 1_555 C N3 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N2 DG 4 B DG 4 1_555 C O2 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O6 DG 4 B DG 4 1_555 C N4 DC 3 C DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N1 DA 5 B DA 5 1_555 C N3 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N6 DA 5 B DA 5 1_555 C O4 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N3 DC 6 B DC 6 1_555 C N1 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N4 DC 6 B DC 6 1_555 C O6 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B O2 DC 6 B DC 6 1_555 C N2 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 232 n n 
C1 C2 EDO sing 233 n n 
C1 H11 EDO sing 234 n n 
C1 H12 EDO sing 235 n n 
O1 HO1 EDO sing 236 n n 
C2 O2 EDO sing 237 n n 
C2 H21 EDO sing 238 n n 
C2 H22 EDO sing 239 n n 
O2 HO2 EDO sing 240 n n 
#
_atom_sites.entry_id                     6OEB 
_atom_sites.fract_transf_matrix[1][1]    0.017944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000868 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 301 301 EDO EDO . 
E 4 EDO A 1 302 401 EDO EDO . 
F 4 EDO A 1 303 501 EDO EDO . 
G 4 EDO A 1 304 601 EDO EDO . 
H 4 EDO A 1 305 701 EDO EDO . 
I 5 UNX A 1 306 1 UNX UNX . 
J 5 UNX A 1 307 2 UNX UNX . 
K 5 UNX A 1 308 3 UNX UNX . 
L 5 UNX A 1 309 6 UNX UNX . 
M 5 UNX A 1 310 7 UNX UNX . 
N 5 UNX A 1 311 16 UNX UNX . 
O 5 UNX A 1 312 17 UNX UNX . 
P 5 UNX A 1 313 18 UNX UNX . 
Q 5 UNX A 1 314 19 UNX UNX . 
R 5 UNX A 1 315 20 UNX UNX . 
S 5 UNX B 1 101 8 UNX UNX . 
T 4 EDO C 1 101 101 EDO EDO . 
U 6 HOH A 1 401 28 HOH HOH . 
U 6 HOH A 2 402 46 HOH HOH . 
U 6 HOH A 3 403 22 HOH HOH . 
U 6 HOH A 4 404 8 HOH HOH . 
U 6 HOH A 5 405 20 HOH HOH . 
U 6 HOH A 6 406 13 HOH HOH . 
U 6 HOH A 7 407 31 HOH HOH . 
U 6 HOH A 8 408 38 HOH HOH . 
U 6 HOH A 9 409 43 HOH HOH . 
U 6 HOH A 10 410 54 HOH HOH . 
U 6 HOH A 11 411 47 HOH HOH . 
U 6 HOH A 12 412 52 HOH HOH . 
U 6 HOH A 13 413 83 HOH HOH . 
U 6 HOH A 14 414 5 HOH HOH . 
U 6 HOH A 15 415 11 HOH HOH . 
U 6 HOH A 16 416 12 HOH HOH . 
U 6 HOH A 17 417 78 HOH HOH . 
U 6 HOH A 18 418 19 HOH HOH . 
U 6 HOH A 19 419 59 HOH HOH . 
U 6 HOH A 20 420 3 HOH HOH . 
U 6 HOH A 21 421 41 HOH HOH . 
U 6 HOH A 22 422 80 HOH HOH . 
U 6 HOH A 23 423 48 HOH HOH . 
U 6 HOH A 24 424 73 HOH HOH . 
U 6 HOH A 25 425 68 HOH HOH . 
U 6 HOH A 26 426 27 HOH HOH . 
U 6 HOH A 27 427 23 HOH HOH . 
U 6 HOH A 28 428 55 HOH HOH . 
U 6 HOH A 29 429 84 HOH HOH . 
U 6 HOH A 30 430 18 HOH HOH . 
U 6 HOH A 31 431 36 HOH HOH . 
U 6 HOH A 32 432 4 HOH HOH . 
U 6 HOH A 33 433 79 HOH HOH . 
U 6 HOH A 34 434 2 HOH HOH . 
U 6 HOH A 35 435 14 HOH HOH . 
U 6 HOH A 36 436 34 HOH HOH . 
U 6 HOH A 37 437 6 HOH HOH . 
U 6 HOH A 38 438 51 HOH HOH . 
U 6 HOH A 39 439 29 HOH HOH . 
U 6 HOH A 40 440 1 HOH HOH . 
U 6 HOH A 41 441 63 HOH HOH . 
U 6 HOH A 42 442 56 HOH HOH . 
U 6 HOH A 43 443 74 HOH HOH . 
U 6 HOH A 44 444 66 HOH HOH . 
U 6 HOH A 45 445 72 HOH HOH . 
U 6 HOH A 46 446 40 HOH HOH . 
U 6 HOH A 47 447 42 HOH HOH . 
U 6 HOH A 48 448 17 HOH HOH . 
U 6 HOH A 49 449 71 HOH HOH . 
U 6 HOH A 50 450 53 HOH HOH . 
U 6 HOH A 51 451 65 HOH HOH . 
U 6 HOH A 52 452 33 HOH HOH . 
U 6 HOH A 53 453 7 HOH HOH . 
U 6 HOH A 54 454 35 HOH HOH . 
U 6 HOH A 55 455 67 HOH HOH . 
U 6 HOH A 56 456 45 HOH HOH . 
U 6 HOH A 57 457 58 HOH HOH . 
U 6 HOH A 58 458 24 HOH HOH . 
U 6 HOH A 59 459 44 HOH HOH . 
U 6 HOH A 60 460 64 HOH HOH . 
U 6 HOH A 61 461 50 HOH HOH . 
U 6 HOH A 62 462 32 HOH HOH . 
U 6 HOH A 63 463 57 HOH HOH . 
U 6 HOH A 64 464 10 HOH HOH . 
U 6 HOH A 65 465 9 HOH HOH . 
U 6 HOH A 66 466 60 HOH HOH . 
U 6 HOH A 67 467 30 HOH HOH . 
U 6 HOH A 68 468 25 HOH HOH . 
U 6 HOH A 69 469 85 HOH HOH . 
U 6 HOH A 70 470 86 HOH HOH . 
U 6 HOH A 71 471 82 HOH HOH . 
V 6 HOH B 1 201 26 HOH HOH . 
V 6 HOH B 2 202 61 HOH HOH . 
V 6 HOH B 3 203 15 HOH HOH . 
V 6 HOH B 4 204 16 HOH HOH . 
W 6 HOH C 1 201 69 HOH HOH . 
W 6 HOH C 2 202 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . T 4 -15.418 -8.914 -44.156 1 81.67 ? C1 EDO 101 C 1 
HETATM 2 O O1 EDO . . . T 4 -16.254 -8.091 -43.359 1 73.67 ? O1 EDO 101 C 1 
HETATM 3 C C2 EDO . . . T 4 -15.94 -10.308 -44.261 1 79.63 ? C2 EDO 101 C 1 
HETATM 4 O O2 EDO . . . T 4 -17.358 -10.381 -44.157 1 76.4 ? O2 EDO 101 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#