data_6OF8
#
_model_server_result.job_id            YHI6MVpp-znpLNyvcejMtw 
_model_server_result.datetime_utc      '2024-11-04 22:43:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6of8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    6OF8 
#
_exptl.entry_id    6OF8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.15 
_cell.angle_gamma         90 
_cell.entry_id            6OF8 
_cell.length_a            162.985 
_cell.length_b            121.343 
_cell.length_c            56.239 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OF8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 110.428677 0 160.32236 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 30 F THR 370 1_555 H K K . F K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc2 A O LYS 31 F LYS 371 1_555 H K K . F K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? 
metalc ? metalc3 A O CYS 33 F CYS 373 1_555 H K K . F K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc4 A O MET 37 F MET 377 1_555 I K K . F K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? 
metalc ? metalc5 A O VAL 49 F VAL 389 1_555 I K K . F K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? 
metalc ? metalc6 A O GLY 51 F GLY 391 1_555 I K K . F K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc7 A OE1 GLN 123 F GLN 463 1_555 H K K . F K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc8 H K K . F K 501 4_547 G OE1 GLN 8 D GLN 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc9 I K K . F K 502 1_555 P O HOH . F HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? 
metalc ? metalc10 E O THR 30 E THR 370 1_555 L K K . E K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc11 E O LYS 31 E LYS 371 1_555 L K K . E K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? 
metalc ? metalc12 E O CYS 33 E CYS 373 1_555 L K K . E K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc13 E OE1 GLN 123 E GLN 463 1_555 L K K . E K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc14 L K K . E K 502 4_548 F OE1 GLN 8 A GLN 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc15 L K K . E K 502 1_555 U O HOH . A HOH 605 4_558 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? 
metalc ? metalc16 F O THR 30 A THR 370 1_555 N K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc17 F O LYS 31 A LYS 371 1_555 N K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? 
metalc ? metalc18 F O CYS 33 A CYS 373 1_555 N K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc19 F OE1 GLN 123 A GLN 463 1_555 N K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
metalc ? metalc20 G O THR 30 D THR 370 1_555 O K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
metalc ? metalc21 G O LYS 31 D LYS 371 1_555 O K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc22 G O CYS 33 D CYS 373 1_555 O K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc23 G OE1 GLN 123 D GLN 463 1_555 O K K . D K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6OF8 
_atom_sites.fract_transf_matrix[1][1]    0.006136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002011 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 K F 1 501 1 K K . 
I 2 K F 1 502 5 K K . 
J 3 GOL C 1 501 2 GOL GOL . 
K 3 GOL E 1 501 3 GOL GOL . 
L 2 K E 1 502 4 K K . 
M 3 GOL A 1 501 1 GOL GOL . 
N 2 K A 1 502 3 K K . 
O 2 K D 1 501 2 K K . 
P 4 HOH F 1 601 29 HOH HOH . 
P 4 HOH F 2 602 82 HOH HOH . 
P 4 HOH F 3 603 70 HOH HOH . 
P 4 HOH F 4 604 46 HOH HOH . 
P 4 HOH F 5 605 74 HOH HOH . 
P 4 HOH F 6 606 19 HOH HOH . 
P 4 HOH F 7 607 67 HOH HOH . 
P 4 HOH F 8 608 42 HOH HOH . 
P 4 HOH F 9 609 88 HOH HOH . 
P 4 HOH F 10 610 100 HOH HOH . 
P 4 HOH F 11 611 110 HOH HOH . 
P 4 HOH F 12 612 91 HOH HOH . 
P 4 HOH F 13 613 93 HOH HOH . 
P 4 HOH F 14 614 47 HOH HOH . 
P 4 HOH F 15 615 59 HOH HOH . 
P 4 HOH F 16 616 71 HOH HOH . 
P 4 HOH F 17 617 68 HOH HOH . 
P 4 HOH F 18 618 123 HOH HOH . 
P 4 HOH F 19 619 38 HOH HOH . 
P 4 HOH F 20 620 122 HOH HOH . 
Q 4 HOH B 1 501 25 HOH HOH . 
Q 4 HOH B 2 502 102 HOH HOH . 
Q 4 HOH B 3 503 80 HOH HOH . 
Q 4 HOH B 4 504 27 HOH HOH . 
Q 4 HOH B 5 505 49 HOH HOH . 
Q 4 HOH B 6 506 13 HOH HOH . 
Q 4 HOH B 7 507 85 HOH HOH . 
Q 4 HOH B 8 508 20 HOH HOH . 
Q 4 HOH B 9 509 81 HOH HOH . 
Q 4 HOH B 10 510 121 HOH HOH . 
Q 4 HOH B 11 511 15 HOH HOH . 
Q 4 HOH B 12 512 35 HOH HOH . 
Q 4 HOH B 13 513 112 HOH HOH . 
Q 4 HOH B 14 514 3 HOH HOH . 
Q 4 HOH B 15 515 111 HOH HOH . 
Q 4 HOH B 16 516 28 HOH HOH . 
Q 4 HOH B 17 517 105 HOH HOH . 
Q 4 HOH B 18 518 73 HOH HOH . 
Q 4 HOH B 19 519 14 HOH HOH . 
Q 4 HOH B 20 520 56 HOH HOH . 
Q 4 HOH B 21 521 48 HOH HOH . 
Q 4 HOH B 22 522 113 HOH HOH . 
R 4 HOH C 1 601 17 HOH HOH . 
R 4 HOH C 2 602 52 HOH HOH . 
R 4 HOH C 3 603 53 HOH HOH . 
R 4 HOH C 4 604 64 HOH HOH . 
R 4 HOH C 5 605 40 HOH HOH . 
R 4 HOH C 6 606 114 HOH HOH . 
R 4 HOH C 7 607 58 HOH HOH . 
R 4 HOH C 8 608 79 HOH HOH . 
R 4 HOH C 9 609 84 HOH HOH . 
R 4 HOH C 10 610 83 HOH HOH . 
S 4 HOH G 1 501 120 HOH HOH . 
S 4 HOH G 2 502 117 HOH HOH . 
S 4 HOH G 3 503 101 HOH HOH . 
S 4 HOH G 4 504 23 HOH HOH . 
S 4 HOH G 5 505 44 HOH HOH . 
S 4 HOH G 6 506 37 HOH HOH . 
S 4 HOH G 7 507 39 HOH HOH . 
S 4 HOH G 8 508 76 HOH HOH . 
S 4 HOH G 9 509 60 HOH HOH . 
S 4 HOH G 10 510 119 HOH HOH . 
T 4 HOH E 1 601 78 HOH HOH . 
T 4 HOH E 2 602 66 HOH HOH . 
T 4 HOH E 3 603 61 HOH HOH . 
T 4 HOH E 4 604 57 HOH HOH . 
T 4 HOH E 5 605 18 HOH HOH . 
T 4 HOH E 6 606 16 HOH HOH . 
T 4 HOH E 7 607 96 HOH HOH . 
T 4 HOH E 8 608 95 HOH HOH . 
T 4 HOH E 9 609 45 HOH HOH . 
T 4 HOH E 10 610 31 HOH HOH . 
T 4 HOH E 11 611 11 HOH HOH . 
T 4 HOH E 12 612 24 HOH HOH . 
T 4 HOH E 13 613 54 HOH HOH . 
T 4 HOH E 14 614 106 HOH HOH . 
T 4 HOH E 15 615 104 HOH HOH . 
T 4 HOH E 16 616 90 HOH HOH . 
T 4 HOH E 17 617 116 HOH HOH . 
T 4 HOH E 18 618 86 HOH HOH . 
T 4 HOH E 19 619 94 HOH HOH . 
U 4 HOH A 1 601 99 HOH HOH . 
U 4 HOH A 2 602 63 HOH HOH . 
U 4 HOH A 3 603 21 HOH HOH . 
U 4 HOH A 4 604 43 HOH HOH . 
U 4 HOH A 5 605 103 HOH HOH . 
U 4 HOH A 6 606 107 HOH HOH . 
U 4 HOH A 7 607 36 HOH HOH . 
U 4 HOH A 8 608 9 HOH HOH . 
U 4 HOH A 9 609 118 HOH HOH . 
U 4 HOH A 10 610 109 HOH HOH . 
U 4 HOH A 11 611 4 HOH HOH . 
U 4 HOH A 12 612 62 HOH HOH . 
V 4 HOH D 1 601 87 HOH HOH . 
V 4 HOH D 2 602 115 HOH HOH . 
V 4 HOH D 3 603 108 HOH HOH . 
V 4 HOH D 4 604 55 HOH HOH . 
V 4 HOH D 5 605 65 HOH HOH . 
V 4 HOH D 6 606 51 HOH HOH . 
V 4 HOH D 7 607 75 HOH HOH . 
V 4 HOH D 8 608 69 HOH HOH . 
V 4 HOH D 9 609 89 HOH HOH . 
V 4 HOH D 10 610 77 HOH HOH . 
V 4 HOH D 11 611 92 HOH HOH . 
V 4 HOH D 12 612 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 3 43.358 -18.84 74.86 0.86 54.26 ? C1 GOL 501 E 1 
HETATM 2 O O1 GOL . . . K 3 42.992 -17.549 75.245 0.86 64.84 ? O1 GOL 501 E 1 
HETATM 3 C C2 GOL . . . K 3 44.499 -19.309 75.809 0.86 56.39 ? C2 GOL 501 E 1 
HETATM 4 O O2 GOL . . . K 3 44.034 -19.653 77.072 0.86 39.62 ? O2 GOL 501 E 1 
HETATM 5 C C3 GOL . . . K 3 45.152 -20.512 75.09 0.86 56.25 ? C3 GOL 501 E 1 
HETATM 6 O O3 GOL . . . K 3 45.563 -20.061 73.84 0.86 48.4 ? O3 GOL 501 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#