data_6OGK # _model_server_result.job_id vIuBPpQudohwHtKwfOjjDA _model_server_result.datetime_utc '2024-10-18 06:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ogk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":211}' # _entry.id 6OGK # _exptl.entry_id 6OGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OGK _cell.length_a 40.47 _cell.length_b 51.976 _cell.length_c 66.304 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 5 D DA 5 1_555 B P 5CM 6 D 5CM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.555 ? covale ? covale2 B O3' 5CM 6 D 5CM 6 1_555 B P DA 7 D DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? metalc ? metalc1 A O LYS 68 A LYS 144 1_555 N CA CA . A CA 211 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A O ASP 78 A ASP 154 1_555 N CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 A OD1 ASP 78 A ASP 154 1_555 N CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 N CA CA . A CA 211 1_555 V O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 N CA CA . A CA 211 1_555 V O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 N CA CA . A CA 211 1_555 V O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc7 N CA CA . A CA 211 1_555 V O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 D DG 1 1_555 C N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 D DG 1 1_555 C O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 D DG 1 1_555 C N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 2 D DC 2 1_555 C N1 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 2 D DC 2 1_555 C O6 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 2 D DC 2 1_555 C N2 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 D DC 3 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 D DC 3 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 D DC 3 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 D DT 4 1_555 C N1 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 D DT 4 1_555 C N6 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 D DA 5 1_555 C N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 D DA 5 1_555 C O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 5CM 6 D 5CM 6 1_555 C N1 DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 5CM 6 D 5CM 6 1_555 C O6 DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 5CM 6 D 5CM 6 1_555 C N2 DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DA 7 D DA 7 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N6 DA 7 D DA 7 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DC 8 D DC 8 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 DC 8 D DC 8 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 DC 8 D DC 8 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DT 9 D DT 9 1_555 C N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 9 D DT 9 1_555 C N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 DC 10 D DC 10 1_555 C N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N4 DC 10 D DC 10 1_555 C O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O2 DC 10 D DC 10 1_555 C N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N3 DC 11 D DC 11 1_555 C N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N4 DC 11 D DC 11 1_555 C O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O2 DC 11 D DC 11 1_555 C N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N1 DG 12 D DG 12 1_555 C N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N2 DG 12 D DG 12 1_555 C O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O6 DG 12 D DG 12 1_555 C N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OGK _atom_sites.fract_transf_matrix[1][1] 0.02471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 UNX A 1 201 2 UNX UNX . E 4 UNX A 1 202 4 UNX UNX . F 4 UNX A 1 203 5 UNX UNX . G 4 UNX A 1 204 7 UNX UNX . H 4 UNX A 1 205 10 UNX UNX . I 4 UNX A 1 206 12 UNX UNX . J 4 UNX A 1 207 13 UNX UNX . K 4 UNX A 1 208 14 UNX UNX . L 4 UNX A 1 209 15 UNX UNX . M 4 UNX A 1 210 17 UNX UNX . N 5 CA A 1 211 1 CA CA . O 4 UNX D 1 101 8 UNX UNX . P 4 UNX D 1 102 9 UNX UNX . Q 4 UNX D 1 103 16 UNX UNX . R 4 UNX D 1 104 18 UNX UNX . S 4 UNX D 1 105 19 UNX UNX . T 4 UNX C 1 101 3 UNX UNX . U 4 UNX C 1 102 11 UNX UNX . V 6 HOH A 1 301 16 HOH HOH . V 6 HOH A 2 302 20 HOH HOH . V 6 HOH A 3 303 33 HOH HOH . V 6 HOH A 4 304 36 HOH HOH . V 6 HOH A 5 305 25 HOH HOH . V 6 HOH A 6 306 26 HOH HOH . V 6 HOH A 7 307 2 HOH HOH . V 6 HOH A 8 308 57 HOH HOH . V 6 HOH A 9 309 35 HOH HOH . V 6 HOH A 10 310 53 HOH HOH . V 6 HOH A 11 311 1 HOH HOH . V 6 HOH A 12 312 51 HOH HOH . V 6 HOH A 13 313 5 HOH HOH . V 6 HOH A 14 314 6 HOH HOH . V 6 HOH A 15 315 67 HOH HOH . V 6 HOH A 16 316 58 HOH HOH . V 6 HOH A 17 317 22 HOH HOH . V 6 HOH A 18 318 55 HOH HOH . V 6 HOH A 19 319 56 HOH HOH . V 6 HOH A 20 320 21 HOH HOH . V 6 HOH A 21 321 3 HOH HOH . V 6 HOH A 22 322 7 HOH HOH . V 6 HOH A 23 323 4 HOH HOH . V 6 HOH A 24 324 37 HOH HOH . V 6 HOH A 25 325 8 HOH HOH . V 6 HOH A 26 326 49 HOH HOH . V 6 HOH A 27 327 34 HOH HOH . V 6 HOH A 28 328 47 HOH HOH . V 6 HOH A 29 329 60 HOH HOH . V 6 HOH A 30 330 50 HOH HOH . V 6 HOH A 31 331 61 HOH HOH . V 6 HOH A 32 332 52 HOH HOH . V 6 HOH A 33 333 54 HOH HOH . W 6 HOH D 1 201 9 HOH HOH . W 6 HOH D 2 202 40 HOH HOH . W 6 HOH D 3 203 39 HOH HOH . W 6 HOH D 4 204 66 HOH HOH . W 6 HOH D 5 205 44 HOH HOH . W 6 HOH D 6 206 24 HOH HOH . W 6 HOH D 7 207 27 HOH HOH . W 6 HOH D 8 208 64 HOH HOH . W 6 HOH D 9 209 17 HOH HOH . W 6 HOH D 10 210 15 HOH HOH . W 6 HOH D 11 211 41 HOH HOH . W 6 HOH D 12 212 13 HOH HOH . W 6 HOH D 13 213 48 HOH HOH . W 6 HOH D 14 214 45 HOH HOH . W 6 HOH D 15 215 18 HOH HOH . W 6 HOH D 16 216 63 HOH HOH . X 6 HOH C 1 201 42 HOH HOH . X 6 HOH C 2 202 23 HOH HOH . X 6 HOH C 3 203 65 HOH HOH . X 6 HOH C 4 204 59 HOH HOH . X 6 HOH C 5 205 46 HOH HOH . X 6 HOH C 6 206 31 HOH HOH . X 6 HOH C 7 207 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 5 _atom_site.Cartn_x 11.209 _atom_site.Cartn_y 5.365 _atom_site.Cartn_z -0.09 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 211 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #